Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003547

Physical Location & Seq

Genomic Coordinates Reverse (-)

63226390 .. 63229644

Gene Structure 3255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG459700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGATATTTTAATTGGGTCGAGTGGGGGTACTCCTGAAACTAGAAATGGTTTACTCGAAGTACAGAAGGCCTTTCGTGAGGCTGGCCTAAATTTCGCAAAACAGGGTGTGGCTATAACTCAAGAAAATTCATTATTAGACAACACTGCTAGAATTGAGGGCTGGTTAGCTAGATTCCCAATGTTTGACTGGGTTGGTGGAAGAACATCTGAGATGTCTGCAGTTGGTCTTCTTCCAGCAGCGCTTCAGGGAATTGACATTAAAGAAATGCTCGCTGGTGGAAAGTTGATGGATGAGGCTAATAGAACCACTGTGGTTAAGAATAATCCTGCCGCCTTGCTTGCTTTATGCTGGTATTGGGCTACTGATGGATTGGGATCCAAGGATATGGTTGTTCTTCCTTACAGGGACAGCCTATTATTATTTAGTCGGTATTTGCAGCAGTTGGTCATGGAATCTATTGGGAAAGAATTTGACCTTGATGGTAATCAGTACTACGAGATAGGCCTCCTGGTCATGATTGGGAGCTTGAACCAGGGAACACGATCGGCTCTTTATTCTAATGACCGAGAGTCGATTACGGTTTCTGTGGAAGAAGTGACACCTAGATCTGTAGGTGCTCTTATAGCACTTTATGAGAGAGCGGTTGGGATTTATGCCTCACTTGTCAACATTAATGCTTACCATCAACCTGAGCCTGTTGAGCCATTGACACTAGATGAAGTAGCCGATCGGTGCCACGCTGCTGAAGATATTGAAATAATTTACAAGATCATCGCTCACATGGCGGCAAATGACAGAGCTCTTATTGCTGAAGGCAGTTGCGGTTCACCACGGAGTGTCAAAGTTTTCCTCGGCGAGTGTAATGTGGAGGCATTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

294

Amino Acids

32.13

Weight (kDa)

4.7

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGI	PF00342	58 - 166	3.7e-20	Phosphoglucose isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24620 AT4G24620
fragaria_vesca	FvH4_5g35680 FvH4_5g35680
malus_domestica	MD08G1194100.v1.1 MD15G1382200.v1.1
prunus_persica	Prupe.1G528400_v2.0.a1 Prupe.1G528400_v2.0.a1
pyrus_communis	pycom15g34220
rosa_chinensis	RchiOBHm_Chr7g0237251 RchiOBHm_Chr7g0237271 RchiOBHm_Chr7g0237281 RchiOBHm_Chr7g0237311 RchiOBHm_Chr7g0237321
rosa_laevigata	RLG00000001012 RLG00000001018
rosa_multiflora	Rmu_sc0002923.1_g000043 Rmu_sc0002923.1_g000049 Rmu_sc0006438.1_g000001 Rmu_sc0006438.1_g000006 Rmu_sc0006438.1_g000007
rosa_roxburghii	Rroxscaffold_3G00224320
rosa_rugosa	Rorug07G0302600 Rorug07G0302700
rosa_samantha	Rh7AG459300 Rh7AG459500 Rh7AG459600 Rh7AG459700 Rh7AG459800 Rh7BG429700 Rh7CG477100 Rh7DG446400
rosa_wichuraiana	Rw0G003870 Rw7G038060 Rw7G038080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	735
AccBSI	CCGCTC	1 cut(s)	644
AciI	CCGC	4 cut(s)	333, 644, 788, 825
AclWI	GGATC	2 cut(s)	372, 385
AcsI	RAATTY	3 cut(s)	91, 127, 470
AcuI	CTGAAG	3 cut(s)	230, 768, 834
AdeI	CACNNNGTG	1 cut(s)	839
AfaI	GTAC	3 cut(s)	31, 63, 494
AfeI	AGCGCT	1 cut(s)	243
AgsI	TTSAA	2 cut(s)	532, 758
AhdI	GACNNNNNGTC	1 cut(s)	571
AjnI	CCWGG	2 cut(s)	510, 534
AluBI	AGCT	3 cut(s)	170, 528, 803
AluI	AGCT	3 cut(s)	170, 528, 803
Alw21I	GWGCWC	2 cut(s)	622, 805
AlwI	GGATC	2 cut(s)	372, 385
Aor51HI	AGCGCT	1 cut(s)	243
AoxI	GGCC	3 cut(s)	69, 85, 505
ApeKI	GCWGC	3 cut(s)	239, 439, 743
ApoI	RAATTY	3 cut(s)	91, 127, 470
AseI	ATTAAT	1 cut(s)	675
AspLEI	GCGC	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	822
BamHI	GGATCC	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	735
BanII	GRGCYC	1 cut(s)	805
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	2 cut(s)	622, 805
BbvI	GCAGC	3 cut(s)	251, 451, 730
BccI	CCATC	4 cut(s)	283, 362, 476, 693
BciT130I	CCWGG	2 cut(s)	512, 536
BfaI	CTAG	5 cut(s)	42, 150, 171, 606, 716
BfmI	CTRYAG	2 cut(s)	219, 612
BfoI	RGCGCY	1 cut(s)	245
BglII	AGATCT	1 cut(s)	608
BisI	GCNGC	5 cut(s)	240, 333, 440, 744, 789
BlsI	GCNGC	5 cut(s)	241, 334, 441, 745, 790
BmcAI	AGTACT	1 cut(s)	494
Bme1390I	CCNGG	2 cut(s)	512, 536
BmeRI	GACNNNNNGTC	1 cut(s)	571
BmiI	GGNNCC	2 cut(s)	379, 737
BmrFI	CCNGG	2 cut(s)	512, 536
BmrI	ACTGGG	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	221
Bpu10I	CCTNAGC	1 cut(s)	693
BpuEI	CTTGAG	1 cut(s)	105
BsaBI	GATNNNNATC	2 cut(s)	376, 486
BsaJI	CCNNGG	4 cut(s)	381, 535, 833, 853
Bse1I	ACTGG	1 cut(s)	194
Bse8I	GATNNNNATC	2 cut(s)	376, 486
BseBI	CCWGG	2 cut(s)	512, 536
BseDI	CCNNGG	4 cut(s)	381, 535, 833, 853
BseGI	GGATG	1 cut(s)	298
BseJI	GATNNNNATC	2 cut(s)	376, 486
BseMII	CTCAG	2 cut(s)	201, 684
BseNI	ACTGG	1 cut(s)	194
BseXI	GCAGC	3 cut(s)	251, 451, 730
Bsh1285I	CGRYCG	2 cut(s)	548, 733
BshFI	GGCC	3 cut(s)	71, 87, 507
BshNI	GGYRCC	1 cut(s)	735
BsiEI	CGRYCG	2 cut(s)	548, 733
BsiHKAI	GWGCWC	2 cut(s)	622, 805
BslFI	GGGAC	1 cut(s)	422
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	3 cut(s)	71, 87, 507
Bsp1286I	GDGCHC	2 cut(s)	622, 805
Bsp143I	GATC	5 cut(s)	377, 545, 608, 730, 771
BspACI	CCGC	4 cut(s)	333, 644, 788, 825
BspANI	GGCC	3 cut(s)	71, 87, 507
BspCNI	CTCAG	2 cut(s)	202, 685
BspHI	TCATGA	1 cut(s)	516
BspLI	GGNNCC	2 cut(s)	379, 737
BspMAI	CTGCAG	1 cut(s)	223
BspPI	GGATC	2 cut(s)	372, 385
BspT107I	GGYRCC	1 cut(s)	735
BsrBI	CCGCTC	1 cut(s)	644
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	4 cut(s)	381, 535, 833, 853
BssMI	GATC	5 cut(s)	377, 545, 608, 730, 771
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	2 cut(s)	512, 536
Bst4CI	ACNGT	2 cut(s)	313, 583
BstC8I	GCNNGC	3 cut(s)	85, 273, 342
BstDEI	CTNAG	2 cut(s)	210, 693
BstDSI	CCRYGG	1 cut(s)	833
BstF5I	GGATG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	5 cut(s)	380, 548, 611, 733, 774
BstMBI	GATC	5 cut(s)	377, 545, 608, 730, 771
BstMCI	CGRYCG	2 cut(s)	548, 733
BstMWI	GCNNNNNNNGC	5 cut(s)	341, 626, 703, 785, 809
BstNI	CCWGG	2 cut(s)	512, 536
BstSCI	CCNGG	2 cut(s)	510, 534
BstSFI	CTRYAG	2 cut(s)	219, 612
BstV1I	GCAGC	3 cut(s)	251, 451, 730
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	2 cut(s)	377, 608
BstXI	CCANNNNNNTGG	1 cut(s)	388
BstYI	RGATCY	2 cut(s)	377, 608
BsuRI	GGCC	3 cut(s)	71, 87, 507
BtgI	CCRYGG	1 cut(s)	833
BtgZI	GCGATG	1 cut(s)	760
BtsCI	GGATG	1 cut(s)	298
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	144, 309
Cac8I	GCNNGC	3 cut(s)	85, 273, 342
CciI	TCATGA	1 cut(s)	516
CfoI	GCGC	1 cut(s)	244
Csp6I	GTAC	3 cut(s)	30, 62, 493
CviAII	CATG	3 cut(s)	451, 517, 784
CviQI	GTAC	3 cut(s)	30, 62, 493
DdeI	CTNAG	2 cut(s)	210, 693
DpnI	GATC	5 cut(s)	379, 547, 610, 732, 773
DpnII	GATC	5 cut(s)	377, 545, 608, 730, 771
DraIII	CACNNNGTG	1 cut(s)	839
DriI	GACNNNNNGTC	1 cut(s)	571
Eam1105I	GACNNNNNGTC	1 cut(s)	571
Ecl136II	GAGCTC	1 cut(s)	803
Eco130I	CCWWGG	1 cut(s)	381
Eco147I	AGGCCT	2 cut(s)	71, 507
Eco24I	GRGCYC	1 cut(s)	805
Eco47III	AGCGCT	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	803
Eco57I	CTGAAG	3 cut(s)	230, 768, 834
EcoICRI	GAGCTC	1 cut(s)	803
EcoRII	CCWGG	2 cut(s)	510, 534
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	805
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	3 cut(s)	454, 520, 787
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	3 cut(s)	450, 516, 783
Fnu4HI	GCNGC	5 cut(s)	240, 333, 440, 744, 789
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	805
Fsp4HI	GCNGC	5 cut(s)	240, 333, 440, 744, 789
FspBI	CTAG	5 cut(s)	42, 150, 171, 606, 716
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	5 cut(s)	240, 333, 440, 744, 789
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	3 cut(s)	71, 87, 507
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	3 cut(s)	454, 520, 787
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HinfI	GANTC	3 cut(s)	174, 455, 572
HphI	GGTGA	1 cut(s)	822
Hpy166II	GTNNAC	3 cut(s)	53, 670, 830
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	4 cut(s)	35, 77, 122, 517
Hpy8I	GTNNAC	3 cut(s)	53, 670, 830
HpyAV	CCTTC	2 cut(s)	61, 809
HpyCH4III	ACNGT	2 cut(s)	313, 583
HpyCH4V	TGCA	2 cut(s)	221, 439
HpyF10VI	GCNNNNNNNGC	5 cut(s)	341, 626, 703, 785, 809
HpyF3I	CTNAG	2 cut(s)	210, 693
Hsp92II	CATG	3 cut(s)	454, 520, 787
HspAI	GCGC	1 cut(s)	242
Kzo9I	GATC	5 cut(s)	377, 545, 608, 730, 771
LmnI	GCTCC	1 cut(s)	525
Lsp1109I	GCAGC	3 cut(s)	251, 451, 730
MaeI	CTAG	5 cut(s)	42, 150, 171, 606, 716
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	5 cut(s)	379, 547, 610, 732, 773
MbiI	CCGCTC	1 cut(s)	644
MboI	GATC	5 cut(s)	377, 545, 608, 730, 771
MboII	GAAGA	6 cut(s)	213, 221, 224, 389, 605, 761
MflI	RGATCY	2 cut(s)	377, 608
MhlI	GDGCHC	2 cut(s)	622, 805
MluCI	AATT	7 cut(s)	12, 91, 127, 153, 252, 470, 762
MlyI	GAGTC	1 cut(s)	581
MnlI	CCTC	7 cut(s)	73, 151, 289, 518, 670, 863, 865
MseI	TTAA	4 cut(s)	11, 261, 318, 675
MspR9I	CCNGG	2 cut(s)	512, 536
MvaI	CCWGG	2 cut(s)	512, 536
MwoI	GCNNNNNNNGC	5 cut(s)	341, 626, 703, 785, 809
NdeII	GATC	5 cut(s)	377, 545, 608, 730, 771
NlaIII	CATG	3 cut(s)	454, 520, 787
NlaIV	GGNNCC	2 cut(s)	379, 737
NmeAIII	GCCGAG	1 cut(s)	834
NmuCI	GTSAC	1 cut(s)	598
PagI	TCATGA	1 cut(s)	516
PceI	AGGCCT	2 cut(s)	71, 507
PfeI	GAWTC	2 cut(s)	174, 455
PkrI	GCNGC	5 cut(s)	241, 334, 441, 745, 790
Ple19I	CGATCG	2 cut(s)	548, 733
PleI	GAGTC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	580
PshBI	ATTAAT	1 cut(s)	675
Psp124BI	GAGCTC	1 cut(s)	805
Psp6I	CCWGG	2 cut(s)	510, 534
PspGI	CCWGG	2 cut(s)	510, 534
PspN4I	GGNNCC	2 cut(s)	379, 737
PstI	CTGCAG	1 cut(s)	223
PsuI	RGATCY	2 cut(s)	377, 608
PvuI	CGATCG	2 cut(s)	548, 733
RsaI	GTAC	3 cut(s)	31, 63, 494
RsaNI	GTAC	3 cut(s)	30, 62, 493
SacI	GAGCTC	1 cut(s)	805
SaqAI	TTAA	4 cut(s)	11, 261, 318, 675
SatI	GCNGC	5 cut(s)	240, 333, 440, 744, 789
Sau3AI	GATC	5 cut(s)	377, 545, 608, 730, 771
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	2 cut(s)	512, 536
SduI	GDGCHC	2 cut(s)	622, 805
SetI	ASST	7 cut(s)	172, 480, 530, 607, 619, 694, 805
SfcI	CTRYAG	2 cut(s)	219, 612
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	7 cut(s)	12, 91, 127, 153, 252, 470, 762
SseBI	AGGCCT	2 cut(s)	71, 507
SsiI	CCGC	4 cut(s)	333, 644, 788, 825
SspMI	CTAG	5 cut(s)	42, 150, 171, 606, 716
SstI	GAGCTC	1 cut(s)	805
StuI	AGGCCT	2 cut(s)	71, 507
StyD4I	CCNGG	2 cut(s)	510, 534
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	313, 583
TaqI	TCGA	3 cut(s)	20, 57, 575
TaqII	GACCGA	1 cut(s)	582
TasI	AATT	7 cut(s)	12, 91, 127, 153, 252, 470, 762
TatI	WGTACW	2 cut(s)	61, 492
TauI	GCSGC	2 cut(s)	335, 791
TfiI	GAWTC	2 cut(s)	174, 455
Tru1I	TTAA	4 cut(s)	11, 261, 318, 675
Tru9I	TTAA	4 cut(s)	11, 261, 318, 675
TscAI	CASTG	2 cut(s)	151, 316
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	3 cut(s)	239, 439, 743
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	2 cut(s)	120, 735
TspGWI	ACGGA	1 cut(s)	850
TspRI	CASTG	2 cut(s)	151, 316
VspI	ATTAAT	1 cut(s)	675
XapI	RAATTY	3 cut(s)	91, 127, 470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	186
XspI	CTAG	5 cut(s)	42, 150, 171, 606, 716
ZrmI	AGTACT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.