Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003547

Physical Location & Seq

Genomic Coordinates Reverse (-)

63217689 .. 63221649

Gene Structure 3961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG459600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAGTGGGGGTACTCCTGAAACTAGAAATGGTTTACTCGAAGTACAGAAGGCCTTTCGTGAGGCTGGCCTAAATTTCGCAAAACAGGGTGTGGCTATAACTCAAGAAAATTCATTATTAGACAACACTGCTAGAATTGAGGGCTGGTTAGCTAGATTCCCAATGTTTGACTGGGTTGGTGGAAGAACATCTGAGATGTCTGCAGTTGGTCTTCTTCCAGCAGCGCTTCAGGGAATTGACATTAAAGAAATGCTCGCTGGTGGAAAGTTGATGGATGAGGCTAATAGAACCACTGTGGTTAAGAATAATCCTGCCGCCTTGCTTGCTTTATGCTGGTATTGGGCTACTGATGGATTGGGATCCAAGGATATGGTTGTTCTTCCTTACAGGGACAGCCTATTATTATTTAGTCGGTATTTGCAGCAGTTGGTCATGGAATCTATTGGGAAAGAATTTGACCTTGATGGTAATCAGGTGAATCAAAGACTTACAGTGTACGGAAACAAAGGGAGCACGGATCAGCATGCATACATCCAACAACTGAGAGATGGCGTGCACAATTTCTTTGTGACATTCATTGAAGTACTACGAGATAGGCCTCCTGGTCATGATTGGGAGCTTGAACCAGGTGTCACATGTGGTGACTATCTATTTGGAATGCTACAGGGAACACGATCGGCTCTTTATTCTAATGACCGAGAGTCGATTACGGTTTCTGTGGAAGAAGTGACACCTAGATCTGTAGGTGCTCTTATAGCACTTTATGAGAGAGCGGTTGGGATTTATGCCTCACTTGTCAACATTAATGCTTACCATCAACCTGCTGTAAAGAGCCTGTTGAGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

282

Amino Acids

31.19

Weight (kDa)

5.3

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGI	PF00342	52 - 197	7.3e-26	Phosphoglucose isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24620 AT4G24620
fragaria_vesca	FvH4_5g35680 FvH4_5g35680
malus_domestica	MD08G1194100.v1.1 MD15G1382200.v1.1
prunus_persica	Prupe.1G528400_v2.0.a1 Prupe.1G528400_v2.0.a1
pyrus_communis	pycom15g34220
rosa_chinensis	RchiOBHm_Chr7g0237251 RchiOBHm_Chr7g0237271 RchiOBHm_Chr7g0237281 RchiOBHm_Chr7g0237311 RchiOBHm_Chr7g0237321
rosa_laevigata	RLG00000001012 RLG00000001018
rosa_multiflora	Rmu_sc0002923.1_g000043 Rmu_sc0002923.1_g000049 Rmu_sc0006438.1_g000001 Rmu_sc0006438.1_g000006 Rmu_sc0006438.1_g000007
rosa_roxburghii	Rroxscaffold_3G00224320
rosa_rugosa	Rorug07G0302600 Rorug07G0302700
rosa_samantha	Rh7AG459300 Rh7AG459500 Rh7AG459600 Rh7AG459700 Rh7AG459800 Rh7BG429700 Rh7CG477100 Rh7DG446400
rosa_wichuraiana	Rw0G003870 Rw7G038060 Rw7G038080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	829
AccBSI	CCGCTC	1 cut(s)	773
AciI	CCGC	2 cut(s)	315, 773
AclWI	GGATC	3 cut(s)	354, 367, 525
AcsI	RAATTY	3 cut(s)	73, 109, 452
AcuI	CTGAAG	1 cut(s)	212
AfaI	GTAC	4 cut(s)	13, 45, 497, 585
AfeI	AGCGCT	1 cut(s)	225
AflIII	ACRYGT	1 cut(s)	635
AgsI	TTSAA	2 cut(s)	581, 623
AhdI	GACNNNNNGTC	1 cut(s)	700
AjnI	CCWGG	2 cut(s)	601, 625
AluBI	AGCT	2 cut(s)	152, 619
AluI	AGCT	2 cut(s)	152, 619
Alw21I	GWGCWC	3 cut(s)	515, 558, 751
Alw44I	GTGCAC	1 cut(s)	554
AlwI	GGATC	3 cut(s)	354, 367, 525
Aor51HI	AGCGCT	1 cut(s)	225
AoxI	GGCC	3 cut(s)	51, 67, 596
ApaLI	GTGCAC	1 cut(s)	554
ApeKI	GCWGC	2 cut(s)	221, 421
ApoI	RAATTY	3 cut(s)	73, 109, 452
ArsI	GACNNNNNNTTYG	2 cut(s)	635, 667
AseI	ATTAAT	1 cut(s)	804
AspLEI	GCGC	1 cut(s)	226
AsuHPI	GGTGA	2 cut(s)	487, 653
BaeGI	GKGCMC	1 cut(s)	558
BamHI	GGATCC	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	203
Bbv12I	GWGCWC	3 cut(s)	515, 558, 751
BbvI	GCAGC	2 cut(s)	233, 433
BccI	CCATC	5 cut(s)	265, 344, 458, 542, 822
BciT130I	CCWGG	2 cut(s)	603, 627
BfaI	CTAG	4 cut(s)	24, 132, 153, 735
BfmI	CTRYAG	3 cut(s)	201, 662, 741
BfoI	RGCGCY	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	829
BglII	AGATCT	1 cut(s)	737
BisI	GCNGC	3 cut(s)	222, 315, 422
BlsI	GCNGC	3 cut(s)	223, 316, 423
BmcAI	AGTACT	1 cut(s)	585
Bme1390I	CCNGG	2 cut(s)	603, 627
BmeRI	GACNNNNNGTC	1 cut(s)	700
BmiI	GGNNCC	1 cut(s)	361
BmrFI	CCNGG	2 cut(s)	603, 627
BmrI	ACTGGG	1 cut(s)	181
BmuI	ACTGGG	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	87
BsaBI	GATNNNNATC	2 cut(s)	358, 468
BsaJI	CCNNGG	1 cut(s)	363
Bse1I	ACTGG	1 cut(s)	176
Bse8I	GATNNNNATC	2 cut(s)	358, 468
BseBI	CCWGG	2 cut(s)	603, 627
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	2 cut(s)	280, 531
BseJI	GATNNNNATC	2 cut(s)	358, 468
BseMII	CTCAG	2 cut(s)	183, 533
BseNI	ACTGG	1 cut(s)	176
BseSI	GKGCMC	1 cut(s)	558
BseXI	GCAGC	2 cut(s)	233, 433
Bsh1285I	CGRYCG	1 cut(s)	677
BshFI	GGCC	3 cut(s)	53, 69, 598
BsiEI	CGRYCG	1 cut(s)	677
BsiHKAI	GWGCWC	3 cut(s)	515, 558, 751
BslFI	GGGAC	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	404
BsmI	GAATGC	1 cut(s)	663
BsnI	GGCC	3 cut(s)	53, 69, 598
Bsp1286I	GDGCHC	3 cut(s)	515, 558, 751
Bsp143I	GATC	4 cut(s)	359, 517, 674, 737
BspACI	CCGC	2 cut(s)	315, 773
BspANI	GGCC	3 cut(s)	53, 69, 598
BspCNI	CTCAG	2 cut(s)	184, 534
BspHI	TCATGA	1 cut(s)	607
BspLI	GGNNCC	1 cut(s)	361
BspMAI	CTGCAG	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	829
BspPI	GGATC	3 cut(s)	354, 367, 525
BsrBI	CCGCTC	1 cut(s)	773
BsrI	ACTGG	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	4 cut(s)	359, 517, 674, 737
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	603, 627
Bst4CI	ACNGT	3 cut(s)	295, 493, 712
BstC8I	GCNNGC	5 cut(s)	67, 255, 324, 525, 554
BstDEI	CTNAG	2 cut(s)	192, 542
BstF5I	GGATG	2 cut(s)	280, 531
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	4 cut(s)	362, 520, 677, 740
BstMBI	GATC	4 cut(s)	359, 517, 674, 737
BstMCI	CGRYCG	1 cut(s)	677
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 755, 840
BstNI	CCWGG	2 cut(s)	603, 627
BstNSI	RCATGY	2 cut(s)	527, 639
BstSCI	CCNGG	2 cut(s)	601, 625
BstSFI	CTRYAG	3 cut(s)	201, 662, 741
BstSLI	GKGCMC	1 cut(s)	558
BstV1I	GCAGC	2 cut(s)	233, 433
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	2 cut(s)	359, 737
BstXI	CCANNNNNNTGG	1 cut(s)	370
BstYI	RGATCY	2 cut(s)	359, 737
BsuRI	GGCC	3 cut(s)	53, 69, 598
BtsCI	GGATG	2 cut(s)	280, 531
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	3 cut(s)	126, 291, 498
BveI	ACCTGC	1 cut(s)	829
Cac8I	GCNNGC	5 cut(s)	67, 255, 324, 525, 554
CciI	TCATGA	1 cut(s)	607
CfoI	GCGC	1 cut(s)	226
CsiI	ACCWGGT	1 cut(s)	625
Csp6I	GTAC	4 cut(s)	12, 44, 496, 584
CviAII	CATG	4 cut(s)	433, 524, 608, 636
CviQI	GTAC	4 cut(s)	12, 44, 496, 584
DdeI	CTNAG	2 cut(s)	192, 542
DpnI	GATC	4 cut(s)	361, 519, 676, 739
DpnII	GATC	4 cut(s)	359, 517, 674, 737
DriI	GACNNNNNGTC	1 cut(s)	700
Eam1105I	GACNNNNNGTC	1 cut(s)	700
Eco130I	CCWWGG	1 cut(s)	363
Eco147I	AGGCCT	2 cut(s)	53, 598
Eco47III	AGCGCT	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	601, 625
EcoT14I	CCWWGG	1 cut(s)	363
EcoT22I	ATGCAT	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	4 cut(s)	436, 527, 611, 639
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	4 cut(s)	432, 523, 607, 635
Fnu4HI	GCNGC	3 cut(s)	222, 315, 422
FokI	GGATG	2 cut(s)	287, 518
Fsp4HI	GCNGC	3 cut(s)	222, 315, 422
FspBI	CTAG	4 cut(s)	24, 132, 153, 735
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	3 cut(s)	222, 315, 422
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	3 cut(s)	53, 69, 598
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	4 cut(s)	436, 527, 611, 639
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HinfI	GANTC	4 cut(s)	156, 437, 478, 701
HphI	GGTGA	2 cut(s)	487, 653
Hpy166II	GTNNAC	4 cut(s)	35, 496, 556, 799
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	4 cut(s)	17, 59, 104, 608
Hpy8I	GTNNAC	4 cut(s)	35, 496, 556, 799
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	3 cut(s)	295, 493, 712
HpyCH4V	TGCA	4 cut(s)	203, 421, 527, 556
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 755, 840
HpyF3I	CTNAG	2 cut(s)	192, 542
Hsp92II	CATG	4 cut(s)	436, 527, 611, 639
HspAI	GCGC	1 cut(s)	224
Kzo9I	GATC	4 cut(s)	359, 517, 674, 737
LmnI	GCTCC	2 cut(s)	510, 616
Lsp1109I	GCAGC	2 cut(s)	233, 433
MabI	ACCWGGT	1 cut(s)	625
MaeI	CTAG	4 cut(s)	24, 132, 153, 735
MaeIII	GTNAC	4 cut(s)	568, 631, 641, 727
MalI	GATC	4 cut(s)	361, 519, 676, 739
MbiI	CCGCTC	1 cut(s)	773
MboI	GATC	4 cut(s)	359, 517, 674, 737
MboII	GAAGA	5 cut(s)	195, 203, 206, 371, 734
MflI	RGATCY	2 cut(s)	359, 737
MhlI	GDGCHC	3 cut(s)	515, 558, 751
MluCI	AATT	6 cut(s)	73, 109, 135, 234, 452, 559
MlyI	GAGTC	1 cut(s)	710
MmeI	TCCRAC	1 cut(s)	559
MnlI	CCTC	5 cut(s)	55, 133, 271, 609, 799
Mph1103I	ATGCAT	1 cut(s)	529
MseI	TTAA	3 cut(s)	243, 300, 804
MspR9I	CCNGG	2 cut(s)	603, 627
Mva1269I	GAATGC	1 cut(s)	663
MvaI	CCWGG	2 cut(s)	603, 627
MwoI	GCNNNNNNNGC	3 cut(s)	323, 755, 840
NdeII	GATC	4 cut(s)	359, 517, 674, 737
NlaIII	CATG	4 cut(s)	436, 527, 611, 639
NlaIV	GGNNCC	1 cut(s)	361
NmuCI	GTSAC	4 cut(s)	568, 631, 641, 727
NsiI	ATGCAT	1 cut(s)	529
NspI	RCATGY	2 cut(s)	527, 639
PaeI	GCATGC	1 cut(s)	527
PagI	TCATGA	1 cut(s)	607
PceI	AGGCCT	2 cut(s)	53, 598
PciI	ACATGT	1 cut(s)	635
PctI	GAATGC	1 cut(s)	663
PfeI	GAWTC	3 cut(s)	156, 437, 478
PkrI	GCNGC	3 cut(s)	223, 316, 423
Ple19I	CGATCG	1 cut(s)	677
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
PscI	ACATGT	1 cut(s)	635
PshBI	ATTAAT	1 cut(s)	804
Psp6I	CCWGG	2 cut(s)	601, 625
PspGI	CCWGG	2 cut(s)	601, 625
PspN4I	GGNNCC	1 cut(s)	361
PstI	CTGCAG	1 cut(s)	205
PsuI	RGATCY	2 cut(s)	359, 737
PvuI	CGATCG	1 cut(s)	677
RsaI	GTAC	4 cut(s)	13, 45, 497, 585
RsaNI	GTAC	4 cut(s)	12, 44, 496, 584
SaqAI	TTAA	3 cut(s)	243, 300, 804
SatI	GCNGC	3 cut(s)	222, 315, 422
Sau3AI	GATC	4 cut(s)	359, 517, 674, 737
ScaI	AGTACT	1 cut(s)	585
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	2 cut(s)	603, 627
SduI	GDGCHC	3 cut(s)	515, 558, 751
SetI	ASST	8 cut(s)	154, 462, 477, 621, 631, 736, 748, 823
SexAI	ACCWGGT	1 cut(s)	625
SfcI	CTRYAG	3 cut(s)	201, 662, 741
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
SphI	GCATGC	1 cut(s)	527
Sse9I	AATT	6 cut(s)	73, 109, 135, 234, 452, 559
SseBI	AGGCCT	2 cut(s)	53, 598
SsiI	CCGC	2 cut(s)	315, 773
SspMI	CTAG	4 cut(s)	24, 132, 153, 735
StuI	AGGCCT	2 cut(s)	53, 598
StyD4I	CCNGG	2 cut(s)	601, 625
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	3 cut(s)	295, 493, 712
TaqI	TCGA	2 cut(s)	39, 704
TaqII	GACCGA	1 cut(s)	711
TasI	AATT	6 cut(s)	73, 109, 135, 234, 452, 559
TatI	WGTACW	2 cut(s)	43, 583
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	3 cut(s)	156, 437, 478
Tru1I	TTAA	3 cut(s)	243, 300, 804
Tru9I	TTAA	3 cut(s)	243, 300, 804
TscAI	CASTG	3 cut(s)	133, 298, 498
TseFI	GTSAC	4 cut(s)	568, 631, 641, 727
TseI	GCWGC	2 cut(s)	221, 421
Tsp45I	GTSAC	4 cut(s)	568, 631, 641, 727
TspDTI	ATGAA	2 cut(s)	102, 565
TspGWI	ACGGA	2 cut(s)	513, 530
TspRI	CASTG	3 cut(s)	133, 298, 498
VneI	GTGCAC	1 cut(s)	554
VspI	ATTAAT	1 cut(s)	804
XapI	RAATTY	3 cut(s)	73, 109, 452
XceI	RCATGY	2 cut(s)	527, 639
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XspI	CTAG	4 cut(s)	24, 132, 153, 735
ZrmI	AGTACT	1 cut(s)	585
Zsp2I	ATGCAT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.