Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003547

Physical Location & Seq

Genomic Coordinates Reverse (-)

9248999 .. 9252448

Gene Structure 3450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001018

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGTTTACTCGAAGTACAGAAGGCCTTTCGGTGTGGCTATCACTCAAGAAAATTCATTATTAGACAACACTGCTAGAATTGAGGGCTGGTTAGCTAGATTCCCAATGTTTGACTGGGTTGGTGGAAGAACATCTGAAATGTCTGCAGTTGGTCTTCTTCCAGCAGCGCTTCAGGGAATTGACATTAAAGAAATGCTCGCTGGTGGAAAGTTGATGGATGAGGCTAATAGAACCACTGTGGTTAAGAATAATCCTGCCGCCTTGCTTGCTCTATGCTGGTATTGGGCTACTGATGGATTGGGATCCAAGGATATGGTTGTTCTTCCTTACAAGGACAGCCTATTATTATTTAGTCGGTATTTGCAGCAGTTGGTCATGGAATCTATTGGGAAAGAATTTGTCCTTGATGGTAATCGGATAGGTTGCCAATATCATGTATTTCTAGCATTTTGCATTATAATTGTTTATAATGGTGATTGGGATTCTAGTGTCAAGCTTCCACCAAGTTCTATGAGTCTTTGTTACCAAACCGCTCATAATTTGTATATCTTTATGAATCAATTTGGATCAGAGTTGTTAACTGATCAAGTTTATCTATATCTTGATGTAAACCATTTCCGAGCCTGGTGCACCTGCTTCTGCAGATACATCCAACAACTGAGAGATGGCGTGCACAATTTCTTTGTGACATTCATTGAAGTACTACGAGATAGGCCTCCTGGTCATGATTGGGAGCTTGAACCAGGTATTCATCACATTAATGCTTACCATCAACCTGAACCTGTTGAACCATTGACACTAGATGAAGTAGCCGATCGGTGCCACGCTCCTGAAGATATTGAAATGATTTACAAGATCATCGCTCACATGGCGGCAAATGACAGAGCTCTTATTGCTGAAGGCAGTTGCGGTTCACCACGGAGCGTCAAAGTTTTCCTCGGCGAGTGTAATGTGGAGGCATTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

323

Amino Acids

36.59

Weight (kDa)

5.26

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGI	PF00342	34 - 142	2e-19	Phosphoglucose isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24620 AT4G24620
fragaria_vesca	FvH4_5g35680 FvH4_5g35680
malus_domestica	MD08G1194100.v1.1 MD15G1382200.v1.1
prunus_persica	Prupe.1G528400_v2.0.a1 Prupe.1G528400_v2.0.a1
pyrus_communis	pycom15g34220
rosa_chinensis	RchiOBHm_Chr7g0237251 RchiOBHm_Chr7g0237271 RchiOBHm_Chr7g0237281 RchiOBHm_Chr7g0237311 RchiOBHm_Chr7g0237321
rosa_laevigata	RLG00000001012 RLG00000001018
rosa_multiflora	Rmu_sc0002923.1_g000043 Rmu_sc0002923.1_g000049 Rmu_sc0006438.1_g000001 Rmu_sc0006438.1_g000006 Rmu_sc0006438.1_g000007
rosa_roxburghii	Rroxscaffold_3G00224320
rosa_rugosa	Rorug07G0302600 Rorug07G0302700
rosa_samantha	Rh7AG459300 Rh7AG459500 Rh7AG459600 Rh7AG459700 Rh7AG459800 Rh7BG429700 Rh7CG477100 Rh7DG446400
rosa_wichuraiana	Rw0G003870 Rw7G038060 Rw7G038080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	458, 468
AarI	CACCTGC	1 cut(s)	641
Acc36I	ACCTGC	1 cut(s)	641
AccB1I	GGYRCC	1 cut(s)	819
AccBSI	CCGCTC	1 cut(s)	533
AciI	CCGC	4 cut(s)	258, 531, 872, 909
AclWI	GGATC	3 cut(s)	297, 310, 574
AcsI	RAATTY	2 cut(s)	52, 395
AcuI	CTGAAG	3 cut(s)	155, 852, 918
AfaI	GTAC	2 cut(s)	17, 702
AfeI	AGCGCT	1 cut(s)	168
AgsI	TTSAA	4 cut(s)	698, 740, 788, 842
AjnI	CCWGG	3 cut(s)	623, 718, 742
AluBI	AGCT	4 cut(s)	95, 496, 736, 887
AluI	AGCT	4 cut(s)	95, 496, 736, 887
Alw21I	GWGCWC	3 cut(s)	632, 675, 889
Alw44I	GTGCAC	2 cut(s)	628, 671
AlwI	GGATC	3 cut(s)	297, 310, 574
Aor51HI	AGCGCT	1 cut(s)	168
AoxI	GGCC	2 cut(s)	23, 713
ApaLI	GTGCAC	2 cut(s)	628, 671
ApeKI	GCWGC	2 cut(s)	164, 364
ApoI	RAATTY	2 cut(s)	52, 395
AseI	ATTAAT	1 cut(s)	759
AspLEI	GCGC	1 cut(s)	169
AsuHPI	GGTGA	2 cut(s)	485, 906
BaeGI	GKGCMC	2 cut(s)	632, 675
BamHI	GGATCC	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	819
BanII	GRGCYC	1 cut(s)	889
BbsI	GAAGAC	1 cut(s)	146
Bbv12I	GWGCWC	3 cut(s)	632, 675, 889
BbvI	GCAGC	2 cut(s)	176, 376
BccI	CCATC	5 cut(s)	208, 287, 401, 659, 777
BcgI	CGANNNNNNTGC	2 cut(s)	609, 643
BciT130I	CCWGG	3 cut(s)	625, 720, 744
BclI	TGATCA	1 cut(s)	583
BfaI	CTAG	5 cut(s)	75, 96, 443, 486, 800
BfmI	CTRYAG	2 cut(s)	144, 640
BfoI	RGCGCY	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	641
BisI	GCNGC	4 cut(s)	165, 258, 365, 873
BlsI	GCNGC	4 cut(s)	166, 259, 366, 874
BmcAI	AGTACT	1 cut(s)	702
Bme1390I	CCNGG	3 cut(s)	625, 720, 744
BmiI	GGNNCC	2 cut(s)	304, 821
BmrFI	CCNGG	3 cut(s)	625, 720, 744
BmrI	ACTGGG	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	30
BsaBI	GATNNNNATC	2 cut(s)	301, 411
BsaJI	CCNNGG	3 cut(s)	306, 917, 937
BsaXI	ACNNNNNCTCC	1 cut(s)	947
Bse1I	ACTGG	1 cut(s)	119
Bse8I	GATNNNNATC	2 cut(s)	301, 411
BseBI	CCWGG	3 cut(s)	625, 720, 744
BseDI	CCNNGG	3 cut(s)	306, 917, 937
BseGI	GGATG	2 cut(s)	223, 648
BseJI	GATNNNNATC	2 cut(s)	301, 411
BseMII	CTCAG	1 cut(s)	650
BseNI	ACTGG	1 cut(s)	119
BseSI	GKGCMC	2 cut(s)	632, 675
BseXI	GCAGC	2 cut(s)	176, 376
Bsh1285I	CGRYCG	1 cut(s)	817
BshFI	GGCC	2 cut(s)	25, 715
BshNI	GGYRCC	1 cut(s)	819
BsiEI	CGRYCG	1 cut(s)	817
BsiHKAI	GWGCWC	3 cut(s)	632, 675, 889
BsnI	GGCC	2 cut(s)	25, 715
Bsp1286I	GDGCHC	3 cut(s)	632, 675, 889
Bsp143I	GATC	5 cut(s)	302, 566, 583, 814, 855
BspACI	CCGC	4 cut(s)	258, 531, 872, 909
BspANI	GGCC	2 cut(s)	25, 715
BspCNI	CTCAG	1 cut(s)	651
BspHI	TCATGA	1 cut(s)	724
BspLI	GGNNCC	2 cut(s)	304, 821
BspMAI	CTGCAG	2 cut(s)	148, 644
BspMI	ACCTGC	1 cut(s)	641
BspPI	GGATC	3 cut(s)	297, 310, 574
BspT107I	GGYRCC	1 cut(s)	819
BsrBI	CCGCTC	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	306, 917, 937
BssMI	GATC	5 cut(s)	302, 566, 583, 814, 855
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	3 cut(s)	625, 720, 744
Bst4CI	ACNGT	1 cut(s)	238
BstC8I	GCNNGC	3 cut(s)	198, 267, 671
BstDEI	CTNAG	1 cut(s)	659
BstDSI	CCRYGG	1 cut(s)	917
BstF5I	GGATG	2 cut(s)	223, 648
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	5 cut(s)	305, 569, 586, 817, 858
BstMBI	GATC	5 cut(s)	302, 566, 583, 814, 855
BstMCI	CGRYCG	1 cut(s)	817
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 869, 893
BstNI	CCWGG	3 cut(s)	625, 720, 744
BstSCI	CCNGG	3 cut(s)	623, 718, 742
BstSFI	CTRYAG	2 cut(s)	144, 640
BstSLI	GKGCMC	2 cut(s)	632, 675
BstV1I	GCAGC	2 cut(s)	176, 376
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	302
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	302
BsuRI	GGCC	2 cut(s)	25, 715
BtgI	CCRYGG	1 cut(s)	917
BtgZI	GCGATG	1 cut(s)	844
BtsCI	GGATG	2 cut(s)	223, 648
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	69, 234
BveI	ACCTGC	1 cut(s)	641
Cac8I	GCNNGC	3 cut(s)	198, 267, 671
CciI	TCATGA	1 cut(s)	724
CfoI	GCGC	1 cut(s)	169
CseI	GACGC	1 cut(s)	913
CsiI	ACCWGGT	1 cut(s)	742
Csp6I	GTAC	2 cut(s)	16, 701
CviAII	CATG	4 cut(s)	376, 434, 725, 868
CviQI	GTAC	2 cut(s)	16, 701
DdeI	CTNAG	1 cut(s)	659
DpnI	GATC	5 cut(s)	304, 568, 585, 816, 857
DpnII	GATC	5 cut(s)	302, 566, 583, 814, 855
Ecl136II	GAGCTC	1 cut(s)	887
Eco130I	CCWWGG	1 cut(s)	306
Eco147I	AGGCCT	2 cut(s)	25, 715
Eco24I	GRGCYC	1 cut(s)	889
Eco47III	AGCGCT	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	887
Eco57I	CTGAAG	3 cut(s)	155, 852, 918
EcoICRI	GAGCTC	1 cut(s)	887
EcoRII	CCWGG	3 cut(s)	623, 718, 742
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	889
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	4 cut(s)	379, 437, 728, 871
FatI	CATG	4 cut(s)	375, 433, 724, 867
FbaI	TGATCA	1 cut(s)	583
Fnu4HI	GCNGC	4 cut(s)	165, 258, 365, 873
FokI	GGATG	2 cut(s)	230, 635
FriOI	GRGCYC	1 cut(s)	889
Fsp4HI	GCNGC	4 cut(s)	165, 258, 365, 873
FspBI	CTAG	5 cut(s)	75, 96, 443, 486, 800
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	4 cut(s)	165, 258, 365, 873
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	25, 715
HgaI	GACGC	1 cut(s)	913
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	4 cut(s)	379, 437, 728, 871
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	579
HindII	GTYRAC	1 cut(s)	579
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	5 cut(s)	99, 380, 482, 514, 556
HpaI	GTTAAC	1 cut(s)	579
HphI	GGTGA	2 cut(s)	485, 906
Hpy166II	GTNNAC	6 cut(s)	7, 579, 610, 630, 673, 914
Hpy188I	TCNGA	4 cut(s)	136, 417, 571, 620
Hpy188III	TCNNGA	4 cut(s)	47, 602, 725, 830
Hpy8I	GTNNAC	6 cut(s)	7, 579, 610, 630, 673, 914
HpyAV	CCTTC	2 cut(s)	15, 893
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	6 cut(s)	146, 364, 453, 630, 642, 673
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 869, 893
HpyF3I	CTNAG	1 cut(s)	659
Hsp92II	CATG	4 cut(s)	379, 437, 728, 871
HspAI	GCGC	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	583
KspAI	GTTAAC	1 cut(s)	579
Kzo9I	GATC	5 cut(s)	302, 566, 583, 814, 855
LmnI	GCTCC	3 cut(s)	733, 832, 921
Lsp1109I	GCAGC	2 cut(s)	176, 376
MabI	ACCWGGT	1 cut(s)	742
MaeI	CTAG	5 cut(s)	75, 96, 443, 486, 800
MaeIII	GTNAC	2 cut(s)	521, 685
MalI	GATC	5 cut(s)	304, 568, 585, 816, 857
MbiI	CCGCTC	1 cut(s)	533
MboI	GATC	5 cut(s)	302, 566, 583, 814, 855
MboII	GAAGA	5 cut(s)	138, 146, 149, 314, 845
MflI	RGATCY	1 cut(s)	302
MhlI	GDGCHC	3 cut(s)	632, 675, 889
MluCI	AATT	8 cut(s)	52, 78, 177, 395, 459, 538, 560, 676
MlyI	GAGTC	1 cut(s)	523
MmeI	TCCRAC	1 cut(s)	676
MnlI	CCTC	5 cut(s)	76, 214, 726, 947, 949
MseI	TTAA	4 cut(s)	186, 243, 578, 759
MslI	CAYNNNNRTG	1 cut(s)	759
MspR9I	CCNGG	3 cut(s)	625, 720, 744
MvaI	CCWGG	3 cut(s)	625, 720, 744
MwoI	GCNNNNNNNGC	3 cut(s)	266, 869, 893
NdeII	GATC	5 cut(s)	302, 566, 583, 814, 855
NlaIII	CATG	4 cut(s)	379, 437, 728, 871
NlaIV	GGNNCC	2 cut(s)	304, 821
NmeAIII	GCCGAG	1 cut(s)	918
NmuCI	GTSAC	1 cut(s)	685
PagI	TCATGA	1 cut(s)	724
PaqCI	CACCTGC	1 cut(s)	641
PceI	AGGCCT	2 cut(s)	25, 715
PfeI	GAWTC	4 cut(s)	99, 380, 482, 556
PkrI	GCNGC	4 cut(s)	166, 259, 366, 874
Ple19I	CGATCG	1 cut(s)	817
PleI	GAGTC	1 cut(s)	522
PpsI	GAGTC	1 cut(s)	522
PshBI	ATTAAT	1 cut(s)	759
PsiI	TTATAA	2 cut(s)	458, 468
Psp124BI	GAGCTC	1 cut(s)	889
Psp6I	CCWGG	3 cut(s)	623, 718, 742
PspGI	CCWGG	3 cut(s)	623, 718, 742
PspN4I	GGNNCC	2 cut(s)	304, 821
PstI	CTGCAG	2 cut(s)	148, 644
PsuI	RGATCY	1 cut(s)	302
PvuI	CGATCG	1 cut(s)	817
RsaI	GTAC	2 cut(s)	17, 702
RsaNI	GTAC	2 cut(s)	16, 701
RseI	CAYNNNNRTG	1 cut(s)	759
SacI	GAGCTC	1 cut(s)	889
SaqAI	TTAA	4 cut(s)	186, 243, 578, 759
SatI	GCNGC	4 cut(s)	165, 258, 365, 873
Sau3AI	GATC	5 cut(s)	302, 566, 583, 814, 855
ScaI	AGTACT	1 cut(s)	702
SchI	GAGTC	1 cut(s)	523
ScrFI	CCNGG	3 cut(s)	625, 720, 744
SduI	GDGCHC	3 cut(s)	632, 675, 889
SetI	ASST	9 cut(s)	97, 424, 498, 635, 738, 748, 778, 784, 889
SexAI	ACCWGGT	1 cut(s)	742
SfcI	CTRYAG	2 cut(s)	144, 640
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	1 cut(s)	45
SmoI	CTYRAG	1 cut(s)	45
Sse9I	AATT	8 cut(s)	52, 78, 177, 395, 459, 538, 560, 676
SseBI	AGGCCT	2 cut(s)	25, 715
SsiI	CCGC	4 cut(s)	258, 531, 872, 909
SspMI	CTAG	5 cut(s)	75, 96, 443, 486, 800
SstI	GAGCTC	1 cut(s)	889
StuI	AGGCCT	2 cut(s)	25, 715
StyD4I	CCNGG	3 cut(s)	623, 718, 742
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	11
TasI	AATT	8 cut(s)	52, 78, 177, 395, 459, 538, 560, 676
TatI	WGTACW	2 cut(s)	15, 700
TauI	GCSGC	2 cut(s)	260, 875
TfiI	GAWTC	4 cut(s)	99, 380, 482, 556
Tru1I	TTAA	4 cut(s)	186, 243, 578, 759
Tru9I	TTAA	4 cut(s)	186, 243, 578, 759
TscAI	CASTG	2 cut(s)	76, 241
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	2 cut(s)	164, 364
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	5 cut(s)	45, 569, 682, 740, 819
TspGWI	ACGGA	1 cut(s)	934
TspRI	CASTG	2 cut(s)	76, 241
VneI	GTGCAC	2 cut(s)	628, 671
VspI	ATTAAT	1 cut(s)	759
XapI	RAATTY	2 cut(s)	52, 395
XcmI	CCANNNNNNNNNTGG	1 cut(s)	111
XspI	CTAG	5 cut(s)	75, 96, 443, 486, 800
ZrmI	AGTACT	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.