Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003547

Physical Location & Seq

Genomic Coordinates Reverse (-)

63209585 .. 63212873

Gene Structure 3289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG459500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAGAGAAACTGAGAATAAGATTTGTGTTATATATGGATATTTTAATTGGAGTGGGGGTACTCCTGAAACTAGAAATGGTTTACTCGAAGTACAGAAGGCCTTTCGTGAGGCTGGCCTAAATTTCGCAAAACAGGGTGTGGCTATAACTCAAGAAAATTCATTATTAGACAACACTGCTAGAATTGAGGGCTGGTTAGCTAGATTCCCAATGTTTGACTGGGTTGGTGGAAGAACATCTGAGATGTCTGCAGTTGGTCTTCTTCCAGCAGCGCTTCAGGGAATTGACATTAAAGAAATGCTCGCTGGTGGAAAGTTGATGGATGAGGCTAATAGAACCACTGTGGTTAAGAATAATCCTGCCGCCTTGCTTGCTTTATGCTGGTATTGGGCTACTGATGGATTGGGATCCAAGGATATGGTTGTTCTTCCTTACAGGGACAGCCTATTATTATTTAGTCGGTATTTGCAGCAGTTGGTCATGGAATCTATTGGGAAAGAATTTGACCTTGATGGTAATCAGTACTACGAGATAGGCCTCCTGGTCATGATTGGGAGCTTGAACCAGGGAACACGATCGGCTCTTTATTCTAATGACCGAGAGTCGATTACGGTTTCTGTGGAAGAAGTGACACCTAGATCTGTAGGTGCTCTTATAGCACTTTATGAGAGAGCGGTTGGGATTTATGCCTCACTTGTCAACATTAATGCTTACCATCAACCTGAGCCTGTTGAGCCATTGACACTAGATGAAGTAGCCGATCGGTGCCACGCTGCTGAAGATATTGAAATAATTTACAAGATCATCGCTCACATGGCGGCAAATGACAGAGCTCTTATTGCTGAAGGCAGTTGCGGTTCACCACGGAGTGTCAAAGTTTTCCTCGGCGAGTGTAATGTGGAGGCATTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

304

Amino Acids

33.54

Weight (kDa)

4.78

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGI	PF00342	68 - 179	3.4e-20	Phosphoglucose isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24620 AT4G24620
fragaria_vesca	FvH4_5g35680 FvH4_5g35680
malus_domestica	MD08G1194100.v1.1 MD15G1382200.v1.1
prunus_persica	Prupe.1G528400_v2.0.a1 Prupe.1G528400_v2.0.a1
pyrus_communis	pycom15g34220
rosa_chinensis	RchiOBHm_Chr7g0237251 RchiOBHm_Chr7g0237271 RchiOBHm_Chr7g0237281 RchiOBHm_Chr7g0237311 RchiOBHm_Chr7g0237321
rosa_laevigata	RLG00000001012 RLG00000001018
rosa_multiflora	Rmu_sc0002923.1_g000043 Rmu_sc0002923.1_g000049 Rmu_sc0006438.1_g000001 Rmu_sc0006438.1_g000006 Rmu_sc0006438.1_g000007
rosa_roxburghii	Rroxscaffold_3G00224320
rosa_rugosa	Rorug07G0302600 Rorug07G0302700
rosa_samantha	Rh7AG459300 Rh7AG459500 Rh7AG459600 Rh7AG459700 Rh7AG459800 Rh7BG429700 Rh7CG477100 Rh7DG446400
rosa_wichuraiana	Rw0G003870 Rw7G038060 Rw7G038080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	765
AccBSI	CCGCTC	1 cut(s)	674
AciI	CCGC	4 cut(s)	363, 674, 818, 855
AclWI	GGATC	2 cut(s)	402, 415
AcsI	RAATTY	3 cut(s)	121, 157, 500
AcuI	CTGAAG	3 cut(s)	260, 798, 864
AdeI	CACNNNGTG	1 cut(s)	869
AfaI	GTAC	3 cut(s)	61, 93, 524
AfeI	AGCGCT	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	562, 788
AhdI	GACNNNNNGTC	1 cut(s)	601
AjnI	CCWGG	2 cut(s)	540, 564
AluBI	AGCT	3 cut(s)	200, 558, 833
AluI	AGCT	3 cut(s)	200, 558, 833
Alw21I	GWGCWC	2 cut(s)	652, 835
AlwI	GGATC	2 cut(s)	402, 415
Aor51HI	AGCGCT	1 cut(s)	273
AoxI	GGCC	3 cut(s)	99, 115, 535
ApeKI	GCWGC	3 cut(s)	269, 469, 773
ApoI	RAATTY	3 cut(s)	121, 157, 500
AseI	ATTAAT	1 cut(s)	705
AspLEI	GCGC	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	852
BamHI	GGATCC	1 cut(s)	407
BanI	GGYRCC	1 cut(s)	765
BanII	GRGCYC	1 cut(s)	835
BbsI	GAAGAC	1 cut(s)	251
Bbv12I	GWGCWC	2 cut(s)	652, 835
BbvI	GCAGC	3 cut(s)	281, 481, 760
BccI	CCATC	4 cut(s)	313, 392, 506, 723
BciT130I	CCWGG	2 cut(s)	542, 566
BfaI	CTAG	5 cut(s)	72, 180, 201, 636, 746
BfmI	CTRYAG	2 cut(s)	249, 642
BfoI	RGCGCY	1 cut(s)	275
BglII	AGATCT	1 cut(s)	638
BisI	GCNGC	5 cut(s)	270, 363, 470, 774, 819
BlsI	GCNGC	5 cut(s)	271, 364, 471, 775, 820
BmcAI	AGTACT	1 cut(s)	524
Bme1390I	CCNGG	2 cut(s)	542, 566
BmeRI	GACNNNNNGTC	1 cut(s)	601
BmiI	GGNNCC	2 cut(s)	409, 767
BmrFI	CCNGG	2 cut(s)	542, 566
BmrI	ACTGGG	1 cut(s)	229
BmuI	ACTGGG	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	251
Bpu10I	CCTNAGC	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	135
BsaBI	GATNNNNATC	2 cut(s)	406, 516
BsaJI	CCNNGG	4 cut(s)	411, 565, 863, 883
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bse1I	ACTGG	1 cut(s)	224
Bse8I	GATNNNNATC	2 cut(s)	406, 516
BseBI	CCWGG	2 cut(s)	542, 566
BseDI	CCNNGG	4 cut(s)	411, 565, 863, 883
BseGI	GGATG	1 cut(s)	328
BseJI	GATNNNNATC	2 cut(s)	406, 516
BseMII	CTCAG	2 cut(s)	231, 714
BseNI	ACTGG	1 cut(s)	224
BseXI	GCAGC	3 cut(s)	281, 481, 760
Bsh1285I	CGRYCG	2 cut(s)	578, 763
BshFI	GGCC	3 cut(s)	101, 117, 537
BshNI	GGYRCC	1 cut(s)	765
BsiEI	CGRYCG	2 cut(s)	578, 763
BsiHKAI	GWGCWC	2 cut(s)	652, 835
BslFI	GGGAC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	3 cut(s)	101, 117, 537
Bsp1286I	GDGCHC	2 cut(s)	652, 835
Bsp143I	GATC	5 cut(s)	407, 575, 638, 760, 801
BspACI	CCGC	4 cut(s)	363, 674, 818, 855
BspANI	GGCC	3 cut(s)	101, 117, 537
BspCNI	CTCAG	3 cut(s)	4, 232, 715
BspHI	TCATGA	1 cut(s)	546
BspLI	GGNNCC	2 cut(s)	409, 767
BspMAI	CTGCAG	1 cut(s)	253
BspPI	GGATC	2 cut(s)	402, 415
BspT107I	GGYRCC	1 cut(s)	765
BsrBI	CCGCTC	1 cut(s)	674
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	4 cut(s)	411, 565, 863, 883
BssMI	GATC	5 cut(s)	407, 575, 638, 760, 801
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	2 cut(s)	542, 566
Bst4CI	ACNGT	2 cut(s)	343, 613
BstC8I	GCNNGC	3 cut(s)	115, 303, 372
BstDEI	CTNAG	3 cut(s)	12, 240, 723
BstDSI	CCRYGG	1 cut(s)	863
BstF5I	GGATG	1 cut(s)	328
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	5 cut(s)	410, 578, 641, 763, 804
BstMBI	GATC	5 cut(s)	407, 575, 638, 760, 801
BstMCI	CGRYCG	2 cut(s)	578, 763
BstMWI	GCNNNNNNNGC	5 cut(s)	371, 656, 733, 815, 839
BstNI	CCWGG	2 cut(s)	542, 566
BstSCI	CCNGG	2 cut(s)	540, 564
BstSFI	CTRYAG	2 cut(s)	249, 642
BstV1I	GCAGC	3 cut(s)	281, 481, 760
BstV2I	GAAGAC	1 cut(s)	251
BstX2I	RGATCY	2 cut(s)	407, 638
BstXI	CCANNNNNNTGG	1 cut(s)	418
BstYI	RGATCY	2 cut(s)	407, 638
BsuRI	GGCC	3 cut(s)	101, 117, 537
BtgI	CCRYGG	1 cut(s)	863
BtgZI	GCGATG	1 cut(s)	790
BtsCI	GGATG	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	174, 339
Cac8I	GCNNGC	3 cut(s)	115, 303, 372
CciI	TCATGA	1 cut(s)	546
CfoI	GCGC	1 cut(s)	274
Csp6I	GTAC	3 cut(s)	60, 92, 523
CviAII	CATG	3 cut(s)	481, 547, 814
CviQI	GTAC	3 cut(s)	60, 92, 523
DdeI	CTNAG	3 cut(s)	12, 240, 723
DpnI	GATC	5 cut(s)	409, 577, 640, 762, 803
DpnII	GATC	5 cut(s)	407, 575, 638, 760, 801
DraIII	CACNNNGTG	1 cut(s)	869
DriI	GACNNNNNGTC	1 cut(s)	601
Eam1105I	GACNNNNNGTC	1 cut(s)	601
Ecl136II	GAGCTC	1 cut(s)	833
Eco130I	CCWWGG	1 cut(s)	411
Eco147I	AGGCCT	2 cut(s)	101, 537
Eco24I	GRGCYC	1 cut(s)	835
Eco47III	AGCGCT	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	833
Eco57I	CTGAAG	3 cut(s)	260, 798, 864
EcoICRI	GAGCTC	1 cut(s)	833
EcoRII	CCWGG	2 cut(s)	540, 564
EcoT14I	CCWWGG	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	835
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	3 cut(s)	484, 550, 817
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	3 cut(s)	480, 546, 813
Fnu4HI	GCNGC	5 cut(s)	270, 363, 470, 774, 819
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	835
Fsp4HI	GCNGC	5 cut(s)	270, 363, 470, 774, 819
FspBI	CTAG	5 cut(s)	72, 180, 201, 636, 746
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	5 cut(s)	270, 363, 470, 774, 819
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	3 cut(s)	101, 117, 537
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	3 cut(s)	484, 550, 817
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	3 cut(s)	204, 485, 602
HphI	GGTGA	1 cut(s)	852
Hpy166II	GTNNAC	3 cut(s)	83, 700, 860
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	4 cut(s)	65, 107, 152, 547
Hpy8I	GTNNAC	3 cut(s)	83, 700, 860
HpyAV	CCTTC	2 cut(s)	91, 839
HpyCH4III	ACNGT	2 cut(s)	343, 613
HpyCH4V	TGCA	2 cut(s)	251, 469
HpyF10VI	GCNNNNNNNGC	5 cut(s)	371, 656, 733, 815, 839
HpyF3I	CTNAG	3 cut(s)	12, 240, 723
Hsp92II	CATG	3 cut(s)	484, 550, 817
HspAI	GCGC	1 cut(s)	272
Kzo9I	GATC	5 cut(s)	407, 575, 638, 760, 801
LmnI	GCTCC	1 cut(s)	555
Lsp1109I	GCAGC	3 cut(s)	281, 481, 760
MaeI	CTAG	5 cut(s)	72, 180, 201, 636, 746
MaeIII	GTNAC	1 cut(s)	628
MalI	GATC	5 cut(s)	409, 577, 640, 762, 803
MbiI	CCGCTC	1 cut(s)	674
MboI	GATC	5 cut(s)	407, 575, 638, 760, 801
MboII	GAAGA	6 cut(s)	243, 251, 254, 419, 635, 791
MflI	RGATCY	2 cut(s)	407, 638
MhlI	GDGCHC	2 cut(s)	652, 835
MluCI	AATT	7 cut(s)	46, 121, 157, 183, 282, 500, 792
MlyI	GAGTC	1 cut(s)	611
MnlI	CCTC	7 cut(s)	103, 181, 319, 548, 700, 893, 895
MseI	TTAA	4 cut(s)	45, 291, 348, 705
MspR9I	CCNGG	2 cut(s)	542, 566
MvaI	CCWGG	2 cut(s)	542, 566
MwoI	GCNNNNNNNGC	5 cut(s)	371, 656, 733, 815, 839
NdeII	GATC	5 cut(s)	407, 575, 638, 760, 801
NlaIII	CATG	3 cut(s)	484, 550, 817
NlaIV	GGNNCC	2 cut(s)	409, 767
NmeAIII	GCCGAG	1 cut(s)	864
NmuCI	GTSAC	1 cut(s)	628
PagI	TCATGA	1 cut(s)	546
PceI	AGGCCT	2 cut(s)	101, 537
PfeI	GAWTC	2 cut(s)	204, 485
PkrI	GCNGC	5 cut(s)	271, 364, 471, 775, 820
Ple19I	CGATCG	2 cut(s)	578, 763
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
PshBI	ATTAAT	1 cut(s)	705
Psp124BI	GAGCTC	1 cut(s)	835
Psp6I	CCWGG	2 cut(s)	540, 564
PspGI	CCWGG	2 cut(s)	540, 564
PspN4I	GGNNCC	2 cut(s)	409, 767
PstI	CTGCAG	1 cut(s)	253
PsuI	RGATCY	2 cut(s)	407, 638
PvuI	CGATCG	2 cut(s)	578, 763
RsaI	GTAC	3 cut(s)	61, 93, 524
RsaNI	GTAC	3 cut(s)	60, 92, 523
SacI	GAGCTC	1 cut(s)	835
SaqAI	TTAA	4 cut(s)	45, 291, 348, 705
SatI	GCNGC	5 cut(s)	270, 363, 470, 774, 819
Sau3AI	GATC	5 cut(s)	407, 575, 638, 760, 801
ScaI	AGTACT	1 cut(s)	524
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	2 cut(s)	542, 566
SduI	GDGCHC	2 cut(s)	652, 835
SetI	ASST	7 cut(s)	202, 510, 560, 637, 649, 724, 835
SfcI	CTRYAG	2 cut(s)	249, 642
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	7 cut(s)	46, 121, 157, 183, 282, 500, 792
SseBI	AGGCCT	2 cut(s)	101, 537
SsiI	CCGC	4 cut(s)	363, 674, 818, 855
SspMI	CTAG	5 cut(s)	72, 180, 201, 636, 746
SstI	GAGCTC	1 cut(s)	835
StuI	AGGCCT	2 cut(s)	101, 537
StyD4I	CCNGG	2 cut(s)	540, 564
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	2 cut(s)	343, 613
TaqI	TCGA	2 cut(s)	87, 605
TaqII	GACCGA	1 cut(s)	612
TasI	AATT	7 cut(s)	46, 121, 157, 183, 282, 500, 792
TatI	WGTACW	2 cut(s)	91, 522
TauI	GCSGC	2 cut(s)	365, 821
TfiI	GAWTC	2 cut(s)	204, 485
Tru1I	TTAA	4 cut(s)	45, 291, 348, 705
Tru9I	TTAA	4 cut(s)	45, 291, 348, 705
TscAI	CASTG	2 cut(s)	181, 346
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	3 cut(s)	269, 469, 773
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	2 cut(s)	150, 765
TspGWI	ACGGA	1 cut(s)	880
TspRI	CASTG	2 cut(s)	181, 346
VspI	ATTAAT	1 cut(s)	705
XapI	RAATTY	3 cut(s)	121, 157, 500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	216
XspI	CTAG	5 cut(s)	72, 180, 201, 636, 746
ZrmI	AGTACT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.