Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003547

Physical Location & Seq

Genomic Coordinates Forward (+)

63182569 .. 63185822

Gene Structure 3254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG459300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGAGTGGGGGTACTCCTGAAACTAGAAATGGTTTACTCGAAGTACAGAAGGCCTTTCGTGAGGCTGGCCTAAATTTCGCAAAACAGGGTGTGGCTATAACTCAAGAAAATTCATTATTAGACAACACTGCTAGAATTGAGGGCTGGTTAGCTAGATTCCCAATGTTTGACTGGGTTGGTGGAAGAACATCTGAGATGTCTGCAGTTGGTCTTCTTCCAGCAGCGCTTCAGGGAATTGACATTAAAGAAATGCTCGCTGGTGGAAAGTTGATGGATGAGGCTAATAGAACCACTGTGGTTAAGAATAATCCTGCCGCCTTGCTTGCTTTATGCTGGTATTGGGCTACTGATGGATTGGGATCCAAGGATATGGTTGTTCTTCCTTACAGGGACAGCCTATTATTATTTAGTCGGTATTTGCAGCAGTTGGTCATGGAATCTATTGGGAAAGAATTTGACCTTGATGGTAATCGGGGAACACGATCGGCTCTTCATTCTAATGACCGAGAGTCGATTACGGTTTCTGTGGAAGAAGTGACACCTAGATCTGTAGGTGCTCTTATAGCACTTTATGAGAGAGCGGTTGGGATTTATGCCTCACTTGTCAACATTAATGCTTACCATCAACCTGACAAGGGGAATGAGGGGACCGCTTCTAAAATCTGTAAAGAGCCTGTTGAGCCATTGACACTAGATGAAGTAGCCGATCGGTGCCACGCTGCTGAAGATATTGAAATAATTTACAAGATCATCGCTCACATGGCGGCAAATGACAGAGCTCTTATTGCTGAAGGCAGTTGCGGTTCACCACGGAGTGTCAAAGTTTTCCTCGGCGAGTGTAATGTGGAGGCATTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

286

Amino Acids

31.17

Weight (kDa)

5.02

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGI	PF00342	52 - 158	9.7e-20	Phosphoglucose isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24620 AT4G24620
fragaria_vesca	FvH4_5g35680 FvH4_5g35680
malus_domestica	MD08G1194100.v1.1 MD15G1382200.v1.1
prunus_persica	Prupe.1G528400_v2.0.a1 Prupe.1G528400_v2.0.a1
pyrus_communis	pycom15g34220
rosa_chinensis	RchiOBHm_Chr7g0237251 RchiOBHm_Chr7g0237271 RchiOBHm_Chr7g0237281 RchiOBHm_Chr7g0237311 RchiOBHm_Chr7g0237321
rosa_laevigata	RLG00000001012 RLG00000001018
rosa_multiflora	Rmu_sc0002923.1_g000043 Rmu_sc0002923.1_g000049 Rmu_sc0006438.1_g000001 Rmu_sc0006438.1_g000006 Rmu_sc0006438.1_g000007
rosa_roxburghii	Rroxscaffold_3G00224320
rosa_rugosa	Rorug07G0302600 Rorug07G0302700
rosa_samantha	Rh7AG459300 Rh7AG459500 Rh7AG459600 Rh7AG459700 Rh7AG459800 Rh7BG429700 Rh7CG477100 Rh7DG446400
rosa_wichuraiana	Rw0G003870 Rw7G038060 Rw7G038080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	711
AccBSI	CCGCTC	1 cut(s)	581
AciI	CCGC	5 cut(s)	315, 581, 651, 764, 801
AclWI	GGATC	2 cut(s)	354, 367
AcsI	RAATTY	3 cut(s)	73, 109, 452
AcuI	CTGAAG	3 cut(s)	212, 744, 810
AdeI	CACNNNGTG	1 cut(s)	815
AfaI	GTAC	2 cut(s)	13, 45
AfeI	AGCGCT	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	635
AgsI	TTSAA	1 cut(s)	734
AhdI	GACNNNNNGTC	1 cut(s)	508
AluBI	AGCT	2 cut(s)	152, 779
AluI	AGCT	2 cut(s)	152, 779
Alw21I	GWGCWC	2 cut(s)	559, 781
AlwI	GGATC	2 cut(s)	354, 367
Aor51HI	AGCGCT	1 cut(s)	225
AoxI	GGCC	2 cut(s)	51, 67
ApeKI	GCWGC	3 cut(s)	221, 421, 719
ApoI	RAATTY	3 cut(s)	73, 109, 452
AseI	ATTAAT	1 cut(s)	612
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	648
AsuHPI	GGTGA	1 cut(s)	798
AvaII	GGWCC	1 cut(s)	648
BamHI	GGATCC	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	711
BanII	GRGCYC	1 cut(s)	781
BbsI	GAAGAC	1 cut(s)	203
Bbv12I	GWGCWC	2 cut(s)	559, 781
BbvI	GCAGC	3 cut(s)	233, 433, 706
BccI	CCATC	4 cut(s)	265, 344, 458, 630
BfaI	CTAG	5 cut(s)	24, 132, 153, 543, 692
BfmI	CTRYAG	2 cut(s)	201, 549
BfoI	RGCGCY	1 cut(s)	227
BglII	AGATCT	1 cut(s)	545
BisI	GCNGC	5 cut(s)	222, 315, 422, 720, 765
BlsI	GCNGC	5 cut(s)	223, 316, 423, 721, 766
Bme18I	GGWCC	1 cut(s)	648
BmeRI	GACNNNNNGTC	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	648
BmiI	GGNNCC	3 cut(s)	361, 649, 713
BmrI	ACTGGG	1 cut(s)	181
BmuI	ACTGGG	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	87
BsaBI	GATNNNNATC	2 cut(s)	358, 468
BsaJI	CCNNGG	3 cut(s)	363, 809, 829
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse1I	ACTGG	1 cut(s)	176
Bse8I	GATNNNNATC	2 cut(s)	358, 468
BseDI	CCNNGG	3 cut(s)	363, 809, 829
BseGI	GGATG	1 cut(s)	280
BseJI	GATNNNNATC	2 cut(s)	358, 468
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	176
BseXI	GCAGC	3 cut(s)	233, 433, 706
Bsh1285I	CGRYCG	2 cut(s)	485, 709
BshFI	GGCC	2 cut(s)	53, 69
BshNI	GGYRCC	1 cut(s)	711
BsiEI	CGRYCG	2 cut(s)	485, 709
BsiHKAI	GWGCWC	2 cut(s)	559, 781
BslFI	GGGAC	2 cut(s)	404, 661
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmFI	GGGAC	2 cut(s)	404, 661
BsnI	GGCC	2 cut(s)	53, 69
Bsp1286I	GDGCHC	2 cut(s)	559, 781
Bsp143I	GATC	5 cut(s)	359, 482, 545, 706, 747
BspACI	CCGC	5 cut(s)	315, 581, 651, 764, 801
BspANI	GGCC	2 cut(s)	53, 69
BspCNI	CTCAG	1 cut(s)	184
BspLI	GGNNCC	3 cut(s)	361, 649, 713
BspMAI	CTGCAG	1 cut(s)	205
BspPI	GGATC	2 cut(s)	354, 367
BspQI	GCTCTTC	1 cut(s)	495
BspT107I	GGYRCC	1 cut(s)	711
BsrBI	CCGCTC	1 cut(s)	581
BsrI	ACTGG	1 cut(s)	176
BssECI	CCNNGG	3 cut(s)	363, 809, 829
BssMI	GATC	5 cut(s)	359, 482, 545, 706, 747
BssT1I	CCWWGG	1 cut(s)	363
Bst4CI	ACNGT	2 cut(s)	295, 520
Bst6I	CTCTTC	1 cut(s)	495
BstC8I	GCNNGC	3 cut(s)	67, 255, 324
BstDEI	CTNAG	1 cut(s)	192
BstDSI	CCRYGG	1 cut(s)	809
BstF5I	GGATG	1 cut(s)	280
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	5 cut(s)	362, 485, 548, 709, 750
BstMBI	GATC	5 cut(s)	359, 482, 545, 706, 747
BstMCI	CGRYCG	2 cut(s)	485, 709
BstMWI	GCNNNNNNNGC	5 cut(s)	323, 563, 679, 761, 785
BstSFI	CTRYAG	2 cut(s)	201, 549
BstV1I	GCAGC	3 cut(s)	233, 433, 706
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	2 cut(s)	359, 545
BstXI	CCANNNNNNTGG	1 cut(s)	370
BstYI	RGATCY	2 cut(s)	359, 545
BsuRI	GGCC	2 cut(s)	53, 69
BtgI	CCRYGG	1 cut(s)	809
BtgZI	GCGATG	1 cut(s)	736
BtsCI	GGATG	1 cut(s)	280
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	2 cut(s)	126, 291
Cac8I	GCNNGC	3 cut(s)	67, 255, 324
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	648
Csp6I	GTAC	2 cut(s)	12, 44
CviAII	CATG	2 cut(s)	433, 760
CviQI	GTAC	2 cut(s)	12, 44
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	5 cut(s)	361, 484, 547, 708, 749
DpnII	GATC	5 cut(s)	359, 482, 545, 706, 747
DraIII	CACNNNGTG	1 cut(s)	815
DriI	GACNNNNNGTC	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	495
Eam1105I	GACNNNNNGTC	1 cut(s)	508
EarI	CTCTTC	1 cut(s)	495
Ecl136II	GAGCTC	1 cut(s)	779
Eco130I	CCWWGG	1 cut(s)	363
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	781
Eco47I	GGWCC	1 cut(s)	648
Eco47III	AGCGCT	1 cut(s)	225
Eco53kI	GAGCTC	1 cut(s)	779
Eco57I	CTGAAG	3 cut(s)	212, 744, 810
EcoICRI	GAGCTC	1 cut(s)	779
EcoT14I	CCWWGG	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	781
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	2 cut(s)	436, 763
FaiI	YATR	9 cut(s)	98, 331, 371, 434, 563, 573, 594, 761, 856
FaqI	GGGAC	2 cut(s)	404, 661
FatI	CATG	2 cut(s)	432, 759
Fnu4HI	GCNGC	5 cut(s)	222, 315, 422, 720, 765
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	1 cut(s)	781
Fsp4HI	GCNGC	5 cut(s)	222, 315, 422, 720, 765
FspBI	CTAG	5 cut(s)	24, 132, 153, 543, 692
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	5 cut(s)	222, 315, 422, 720, 765
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	53, 69
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	2 cut(s)	436, 763
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HinfI	GANTC	3 cut(s)	156, 437, 509
HphI	GGTGA	1 cut(s)	798
Hpy166II	GTNNAC	3 cut(s)	35, 607, 806
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	3 cut(s)	17, 59, 104
Hpy8I	GTNNAC	3 cut(s)	35, 607, 806
HpyAV	CCTTC	2 cut(s)	43, 785
HpyCH4III	ACNGT	2 cut(s)	295, 520
HpyCH4V	TGCA	2 cut(s)	203, 421
HpyF10VI	GCNNNNNNNGC	5 cut(s)	323, 563, 679, 761, 785
HpyF3I	CTNAG	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	436, 763
HspAI	GCGC	1 cut(s)	224
Kzo9I	GATC	5 cut(s)	359, 482, 545, 706, 747
LguI	GCTCTTC	1 cut(s)	495
Lsp1109I	GCAGC	3 cut(s)	233, 433, 706
MaeI	CTAG	5 cut(s)	24, 132, 153, 543, 692
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	5 cut(s)	361, 484, 547, 708, 749
MbiI	CCGCTC	1 cut(s)	581
MboI	GATC	5 cut(s)	359, 482, 545, 706, 747
MboII	GAAGA	7 cut(s)	195, 203, 206, 371, 482, 542, 737
MflI	RGATCY	2 cut(s)	359, 545
MhlI	GDGCHC	2 cut(s)	559, 781
MluCI	AATT	6 cut(s)	73, 109, 135, 234, 452, 738
MlyI	GAGTC	1 cut(s)	518
MnlI	CCTC	7 cut(s)	55, 133, 271, 607, 637, 839, 841
MseI	TTAA	3 cut(s)	243, 300, 612
MslI	CAYNNNNRTG	1 cut(s)	498
MwoI	GCNNNNNNNGC	5 cut(s)	323, 563, 679, 761, 785
NdeII	GATC	5 cut(s)	359, 482, 545, 706, 747
NlaIII	CATG	2 cut(s)	436, 763
NlaIV	GGNNCC	3 cut(s)	361, 649, 713
NmeAIII	GCCGAG	1 cut(s)	810
NmuCI	GTSAC	1 cut(s)	535
PceI	AGGCCT	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	495
PcsI	WCGNNNNNNNCGW	1 cut(s)	478
PfeI	GAWTC	2 cut(s)	156, 437
PkrI	GCNGC	5 cut(s)	223, 316, 423, 721, 766
Ple19I	CGATCG	2 cut(s)	485, 709
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PshBI	ATTAAT	1 cut(s)	612
Psp124BI	GAGCTC	1 cut(s)	781
PspN4I	GGNNCC	3 cut(s)	361, 649, 713
PspPI	GGNCC	1 cut(s)	648
PstI	CTGCAG	1 cut(s)	205
PsuI	RGATCY	2 cut(s)	359, 545
PvuI	CGATCG	2 cut(s)	485, 709
RsaI	GTAC	2 cut(s)	13, 45
RsaNI	GTAC	2 cut(s)	12, 44
RseI	CAYNNNNRTG	1 cut(s)	498
SacI	GAGCTC	1 cut(s)	781
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	3 cut(s)	243, 300, 612
SatI	GCNGC	5 cut(s)	222, 315, 422, 720, 765
Sau3AI	GATC	5 cut(s)	359, 482, 545, 706, 747
Sau96I	GGNCC	1 cut(s)	648
SchI	GAGTC	1 cut(s)	518
SduI	GDGCHC	2 cut(s)	559, 781
SetI	ASST	6 cut(s)	154, 462, 544, 556, 631, 781
SfcI	CTRYAG	2 cut(s)	201, 549
SinI	GGWCC	1 cut(s)	648
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
Sse9I	AATT	6 cut(s)	73, 109, 135, 234, 452, 738
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	5 cut(s)	315, 581, 651, 764, 801
SspMI	CTAG	5 cut(s)	24, 132, 153, 543, 692
SstI	GAGCTC	1 cut(s)	781
StuI	AGGCCT	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	2 cut(s)	295, 520
TaqI	TCGA	2 cut(s)	39, 512
TaqII	GACCGA	1 cut(s)	519
TasI	AATT	6 cut(s)	73, 109, 135, 234, 452, 738
TatI	WGTACW	1 cut(s)	43
TauI	GCSGC	2 cut(s)	317, 767
TfiI	GAWTC	2 cut(s)	156, 437
Tru1I	TTAA	3 cut(s)	243, 300, 612
Tru9I	TTAA	3 cut(s)	243, 300, 612
TscAI	CASTG	2 cut(s)	133, 298
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	3 cut(s)	221, 421, 719
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	3 cut(s)	102, 482, 711
TspGWI	ACGGA	1 cut(s)	826
TspRI	CASTG	2 cut(s)	133, 298
VpaK11BI	GGWCC	1 cut(s)	648
VspI	ATTAAT	1 cut(s)	612
XapI	RAATTY	3 cut(s)	73, 109, 452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XspI	CTAG	5 cut(s)	24, 132, 153, 543, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.