Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00145

Orthogroup ID

OG0003547

Physical Location & Seq

Genomic Coordinates Reverse (-)

33711 .. 39416

Gene Structure 5706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G003870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1749 bp

ATGGCTTCAATATCCGGCATTTGTTCCTCTTCTCCGACTCTGCAACCGCGGCTGAGACCGGCGGCGAGTCTATTACGTAAAGACTCCGTTTCGTTTCCGACGGCCCGGCCCAGGCCCGGCGATCGGGGCTTGTTCGCTCAGTCTGTGGCGCGGGAGATCAAGGCCGAGTTGGCCAAGGCCGACGGCGATGGCGCTCTGATTAAGGAGGAGAAGAAGAAGAAGAAGGTTCTGGAGAAGGATCCTCGGGCGTTGTGGCGGAGGTACGTGGACTGGTTGTACCAGCACAAGGAGCTAGGGCTGTATTTGGATGTGAGTCGGGTCGGGTTTACCGACGAGTTCGTCGCGGAAATGGAGCCCCGGCTCCAGGCGGCGTTTAAGGCCATGGAGGACCTGGAGAAAGGCGCGATTGCGAATCCCGATGAGGGGCGGATGGTCGGGCATTACTGGCTGAGAGACCCTAAGCGGGCGCCGAAACCGATGCTCACGGCTCAGATTGAGAACACGCTCGAGGCGCTGCTCAAGTTCTCCGACGACGTCGTCAGCGGTAAGATTAAGCCGCCGGCTTCTTCGGAGGGTCGTTTTACTCAGGTTCTTTCGGTTGGAATCGGAGGCTCGGCACTTGGACCACAGTTTGTTGCTGAGGCATTGGCGCCTGATGTTCCTCCTCTTAAGATACGATTCATTGACAATACCGATCCAGCAGGAATTGATCATCAGATTGCACAGCTCGGTGAAGAGCTGGCTTCTACTCTTGTAATTGTGATTTCAAAGAGTGGAGGTACTCCTGAAACTAGAAATGGTTTACTCGAAGTACAGAAGGCCTTTCGTGAGGCTGGCCTAAATTTCGCAAAACAGGGTGTGGCTATCACTCAAGAAAATTCATTATTAGACAACACTGCTAGAATTGAGGGCTGGTTAGCTAGATTCCCAATGTTTGACTGGGTTGGTGGAAGAACATCTGAAATGTCTGCAGTTGGTCTTCTTCCAGCAGCGCTTCAGGGAATTGACATTAAAGAAATGCTCGCTGGTGGAAAGTTGATGGATGAGGCTAATAGAACCACTGTGGTTAAGAATAATCCTGCTGCCTTACTTGCTTTATGCTGGTATTGGGCTACTGATGGATTGGGATCCAAGGATATGGTTGTTCTTCCTTACAAGGACAGCCTATTATTATTTAGTCGGTATTTGCAGCAGTTGGTCATGGAATCTATTGGGAAAGAATTTGACCTTGATGGTAATCGGGTGAATCAAGGACTTACAGTGTACGGAAATAAAGGGAGCACGGATCAGCATGCATACATCCAACAACTGAGAGATGGCGTGCACAATTTCTTTGTGACATTCATTGAAGTACTACGAGATAGGCCTCCTGGTCATGATTGGGAGCTTGAACCAGGTGTCACATGTGGTGACTATCTATTTGGAATGCTACAGGGAACACGATCGGCTCTTTATTCTAATGACCGAGAGTCGATTACGGTTTCTGTGGAAGAAGTGACACCTAGATCTGTAGGTGCTCTTATAGCACTTTATGAGAGAGCGGTTGGGATTTATGCCTCACTTGTCAACATTAATGCTTACCATCAACCTGGTGTGGAGGCCGGGAAGAAAGCAGCCGGAGAAGTATTAGCTCTTCAGAAACGGGTTTTATCCGTACTTAATGAGGCCAGGTCTGTAAAAGAGCCTGTTGAGCCATTGACACTAGATGAAGTAGCCGATCGGTGCCACGCTGCTGAAGATAGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

582

Amino Acids

63.8

Weight (kDa)

5.72

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGI	PF00342	127 - 453	2.3e-48	Phosphoglucose isomerase
PGI	PF00342	484 - 544	1.6e-09	Phosphoglucose isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24620 AT4G24620
fragaria_vesca	FvH4_5g35680 FvH4_5g35680
malus_domestica	MD08G1194100.v1.1 MD15G1382200.v1.1
prunus_persica	Prupe.1G528400_v2.0.a1 Prupe.1G528400_v2.0.a1
pyrus_communis	pycom15g34220
rosa_chinensis	RchiOBHm_Chr7g0237251 RchiOBHm_Chr7g0237271 RchiOBHm_Chr7g0237281 RchiOBHm_Chr7g0237311 RchiOBHm_Chr7g0237321
rosa_laevigata	RLG00000001012 RLG00000001018
rosa_multiflora	Rmu_sc0002923.1_g000043 Rmu_sc0002923.1_g000049 Rmu_sc0006438.1_g000001 Rmu_sc0006438.1_g000006 Rmu_sc0006438.1_g000007
rosa_roxburghii	Rroxscaffold_3G00224320
rosa_rugosa	Rorug07G0302600 Rorug07G0302700
rosa_samantha	Rh7AG459300 Rh7AG459500 Rh7AG459600 Rh7AG459700 Rh7AG459800 Rh7BG429700 Rh7CG477100 Rh7DG446400
rosa_wichuraiana	Rw0G003870 Rw7G038060 Rw7G038080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	338, 536
AatII	GACGTC	1 cut(s)	537
AccB1I	GGYRCC	3 cut(s)	466, 649, 1722
AccBSI	CCGCTC	1 cut(s)	1541
AccII	CGCG	4 cut(s)	49, 151, 344, 404
AclWI	GGATC	6 cut(s)	233, 246, 689, 1122, 1135, 1293
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	3 cut(s)	841, 877, 1220
AcuI	CTGAAG	2 cut(s)	980, 1619
AcyI	GRCGYC	3 cut(s)	467, 534, 650
AfaI	GTAC	7 cut(s)	263, 278, 781, 813, 1265, 1353, 1656
AfeI	AGCGCT	1 cut(s)	993
AfiI	CCNNNNNNNGG	8 cut(s)	111, 116, 123, 286, 364, 422, 423, 463
AflII	CTTAAG	1 cut(s)	668
AflIII	ACRYGT	1 cut(s)	1403
AgsI	TTSAA	4 cut(s)	9, 768, 1349, 1391
AhdI	GACNNNNNGTC	1 cut(s)	1468
AjnI	CCWGG	7 cut(s)	110, 363, 390, 1369, 1393, 1588, 1667
AluBI	AGCT	6 cut(s)	292, 727, 739, 920, 1387, 1631
AluI	AGCT	6 cut(s)	292, 727, 739, 920, 1387, 1631
Alw21I	GWGCWC	3 cut(s)	1283, 1326, 1519
Alw26I	GTCTC	2 cut(s)	49, 447
Alw44I	GTGCAC	1 cut(s)	1322
AlwI	GGATC	6 cut(s)	233, 246, 689, 1122, 1135, 1293
Ama87I	CYCGRG	2 cut(s)	243, 506
Aor51HI	AGCGCT	1 cut(s)	993
ApaLI	GTGCAC	1 cut(s)	1322
ApeKI	GCWGC	6 cut(s)	514, 989, 1082, 1189, 1613, 1730
ApoI	RAATTY	3 cut(s)	841, 877, 1220
ArsI	GACNNNNNNTTYG	2 cut(s)	1403, 1435
AseI	ATTAAT	1 cut(s)	1572
AspLEI	GCGC	7 cut(s)	151, 194, 404, 469, 514, 652, 994
AspS9I	GGNCC	5 cut(s)	103, 108, 114, 388, 623
AsuC2I	CCSGG	4 cut(s)	106, 117, 358, 1603
AsuHPI	GGTGA	3 cut(s)	743, 1255, 1421
AvaI	CYCGRG	2 cut(s)	243, 506
AvaII	GGWCC	2 cut(s)	388, 623
BaeGI	GKGCMC	1 cut(s)	1326
BalI	TGGCCA	1 cut(s)	173
BamHI	GGATCC	2 cut(s)	238, 1127
BanI	GGYRCC	3 cut(s)	466, 649, 1722
BanII	GRGCYC	1 cut(s)	357
BarI	GAAGNNNNNNTAC	2 cut(s)	1617, 1649
BbsI	GAAGAC	1 cut(s)	971
Bbv12I	GWGCWC	3 cut(s)	1283, 1326, 1519
BbvCI	CCTCAGC	1 cut(s)	639
BbvI	GCAGC	6 cut(s)	501, 1001, 1069, 1201, 1625, 1717
BccI	CCATC	7 cut(s)	182, 424, 1033, 1112, 1226, 1310, 1590
BceAI	ACGGC	3 cut(s)	117, 199, 501
BcgI	CGANNNNNNTGC	2 cut(s)	460, 494
BciT130I	CCWGG	7 cut(s)	112, 365, 392, 1371, 1395, 1590, 1669
BclI	TGATCA	1 cut(s)	709
BcnI	CCSGG	4 cut(s)	106, 117, 358, 1603
BcoDI	GTCTC	2 cut(s)	49, 447
BfaI	CTAG	6 cut(s)	293, 792, 900, 921, 1503, 1703
BfmI	CTRYAG	3 cut(s)	969, 1430, 1509
BfoI	RGCGCY	5 cut(s)	195, 470, 515, 653, 995
BfrI	CTTAAG	1 cut(s)	668
BglI	GCCNNNNNGGC	1 cut(s)	170
BglII	AGATCT	1 cut(s)	1505
BmcAI	AGTACT	1 cut(s)	1353
Bme18I	GGWCC	2 cut(s)	388, 623
BmeRI	GACNNNNNGTC	1 cut(s)	1468
BmeT110I	CYCGRG	2 cut(s)	243, 506
BmgT120I	GGNCC	5 cut(s)	103, 108, 114, 388, 623
BmiI	GGNNCC	7 cut(s)	240, 354, 362, 468, 651, 1129, 1724
BmrI	ACTGGG	1 cut(s)	949
BmsI	GCATC	1 cut(s)	468
BmuI	ACTGGG	1 cut(s)	949
BpiI	GAAGAC	1 cut(s)	971
BpmI	CTGGAG	3 cut(s)	251, 347, 413
Bpu10I	CCTNAGC	2 cut(s)	459, 639
BpuEI	CTTGAG	2 cut(s)	503, 855
BpuMI	CCSGG	4 cut(s)	106, 117, 358, 1603
BsaAI	YACGTR	2 cut(s)	77, 265
BsaBI	GATNNNNATC	2 cut(s)	1126, 1236
BsaHI	GRCGYC	3 cut(s)	467, 534, 650
BsaI	GGTCTC	2 cut(s)	49, 447
BsaJI	CCNNGG	7 cut(s)	47, 110, 174, 242, 356, 381, 1131
Bsc4I	CCNNNNNNNGG	8 cut(s)	111, 116, 123, 286, 364, 422, 423, 463
Bse118I	RCCGGY	2 cut(s)	58, 559
Bse1I	ACTGG	3 cut(s)	275, 449, 944
Bse8I	GATNNNNATC	2 cut(s)	1126, 1236
BseBI	CCWGG	7 cut(s)	112, 365, 392, 1371, 1395, 1590, 1669
BseDI	CCNNGG	7 cut(s)	47, 110, 174, 242, 356, 381, 1131
BseGI	GGATG	4 cut(s)	313, 435, 1048, 1299
BseJI	GATNNNNATC	2 cut(s)	1126, 1236
BseLI	CCNNNNNNNGG	8 cut(s)	111, 116, 123, 286, 364, 422, 423, 463
BseMII	CTCAG	7 cut(s)	44, 152, 440, 503, 599, 630, 1301
BseNI	ACTGG	3 cut(s)	275, 449, 944
BseRI	GAGGAG	2 cut(s)	221, 654
BseSI	GKGCMC	1 cut(s)	1326
BseXI	GCAGC	6 cut(s)	501, 1001, 1069, 1201, 1625, 1717
Bsh1236I	CGCG	4 cut(s)	49, 151, 344, 404
Bsh1285I	CGRYCG	3 cut(s)	124, 1445, 1720
BshNI	GGYRCC	3 cut(s)	466, 649, 1722
BsiEI	CGRYCG	3 cut(s)	124, 1445, 1720
BsiHKAI	GWGCWC	3 cut(s)	1283, 1326, 1519
BsiHKCI	CYCGRG	2 cut(s)	243, 506
BsiSI	CCGG	8 cut(s)	15, 59, 106, 117, 358, 560, 1602, 1617
BslI	CCNNNNNNNGG	8 cut(s)	111, 116, 123, 286, 364, 422, 423, 463
BsmAI	GTCTC	2 cut(s)	49, 447
BsmI	GAATGC	1 cut(s)	1431
Bso31I	GGTCTC	2 cut(s)	49, 447
BsoBI	CYCGRG	2 cut(s)	243, 506
Bsp1286I	GDGCHC	4 cut(s)	357, 1283, 1326, 1519
Bsp19I	CCATGG	1 cut(s)	381
BspCNI	CTCAG	7 cut(s)	45, 151, 441, 502, 598, 631, 1302
BspFNI	CGCG	4 cut(s)	49, 151, 344, 404
BspHI	TCATGA	1 cut(s)	1375
BspLI	GGNNCC	7 cut(s)	240, 354, 362, 468, 651, 1129, 1724
BspMAI	CTGCAG	1 cut(s)	973
BspPI	GGATC	6 cut(s)	233, 246, 689, 1122, 1135, 1293
BspQI	GCTCTTC	2 cut(s)	729, 1638
BspT107I	GGYRCC	3 cut(s)	466, 649, 1722
BspTI	CTTAAG	1 cut(s)	668
BspTNI	GGTCTC	2 cut(s)	49, 447
BsrBI	CCGCTC	1 cut(s)	1541
BsrFI	RCCGGY	2 cut(s)	58, 559
BsrI	ACTGG	3 cut(s)	275, 449, 944
BssAI	RCCGGY	2 cut(s)	58, 559
BssECI	CCNNGG	7 cut(s)	47, 110, 174, 242, 356, 381, 1131
BssNI	GRCGYC	3 cut(s)	467, 534, 650
BssT1I	CCWWGG	3 cut(s)	174, 381, 1131
Bst2UI	CCWGG	7 cut(s)	112, 365, 392, 1371, 1395, 1590, 1669
Bst4CI	ACNGT	4 cut(s)	630, 1063, 1261, 1480
Bst6I	CTCTTC	3 cut(s)	34, 729, 1638
BstACI	GRCGYC	3 cut(s)	467, 534, 650
BstAFI	CTTAAG	1 cut(s)	668
BstBAI	YACGTR	2 cut(s)	77, 265
BstC8I	GCNNGC	7 cut(s)	465, 561, 741, 835, 1023, 1293, 1322
BstDEI	CTNAG	8 cut(s)	53, 138, 449, 459, 489, 585, 639, 1310
BstDSI	CCRYGG	2 cut(s)	47, 381
BstF5I	GGATG	4 cut(s)	313, 435, 1048, 1299
BstFNI	CGCG	4 cut(s)	49, 151, 344, 404
BstH2I	RGCGCY	5 cut(s)	195, 470, 515, 653, 995
BstHHI	GCGC	7 cut(s)	151, 194, 404, 469, 514, 652, 994
BstMAI	GTCTC	2 cut(s)	49, 447
BstMCI	CGRYCG	3 cut(s)	124, 1445, 1720
BstNI	CCWGG	7 cut(s)	112, 365, 392, 1371, 1395, 1590, 1669
BstNSI	RCATGY	2 cut(s)	1295, 1407
BstSFI	CTRYAG	3 cut(s)	969, 1430, 1509
BstSLI	GKGCMC	1 cut(s)	1326
BstSNI	TACGTA	1 cut(s)	77
BstUI	CGCG	4 cut(s)	49, 151, 344, 404
BstV1I	GCAGC	6 cut(s)	501, 1001, 1069, 1201, 1625, 1717
BstV2I	GAAGAC	1 cut(s)	971
BstX2I	RGATCY	3 cut(s)	238, 1127, 1505
BstXI	CCANNNNNNTGG	2 cut(s)	1138, 1589
BstYI	RGATCY	3 cut(s)	238, 1127, 1505
BtgI	CCRYGG	2 cut(s)	47, 381
BtgZI	GCGATG	1 cut(s)	201
BtsCI	GGATG	4 cut(s)	313, 435, 1048, 1299
BtsI	GCAGTG	1 cut(s)	894
BtsIMutI	CAGTG	3 cut(s)	894, 1059, 1266
Cac8I	GCNNGC	7 cut(s)	465, 561, 741, 835, 1023, 1293, 1322
CciI	TCATGA	1 cut(s)	1375
CfoI	GCGC	7 cut(s)	151, 194, 404, 469, 514, 652, 994
Cfr10I	RCCGGY	2 cut(s)	58, 559
Cfr13I	GGNCC	5 cut(s)	103, 108, 114, 388, 623
Cfr42I	CCGCGG	1 cut(s)	50
CsiI	ACCWGGT	2 cut(s)	1393, 1588
Csp6I	GTAC	7 cut(s)	262, 277, 780, 812, 1264, 1352, 1655
CviAII	CATG	5 cut(s)	382, 1201, 1292, 1376, 1404
CviQI	GTAC	7 cut(s)	262, 277, 780, 812, 1264, 1352, 1655
DdeI	CTNAG	8 cut(s)	53, 138, 449, 459, 489, 585, 639, 1310
DinI	GGCGCC	2 cut(s)	468, 651
DrdI	GACNNNNNNGTC	2 cut(s)	338, 536
DriI	GACNNNNNGTC	1 cut(s)	1468
DseDI	GACNNNNNNGTC	2 cut(s)	338, 536
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	3 cut(s)	34, 729, 1638
Eam1105I	GACNNNNNGTC	1 cut(s)	1468
EarI	CTCTTC	3 cut(s)	34, 729, 1638
EciI	GGCGGA	2 cut(s)	271, 442
Eco105I	TACGTA	1 cut(s)	77
Eco130I	CCWWGG	3 cut(s)	174, 381, 1131
Eco147I	AGGCCT	2 cut(s)	821, 1366
Eco24I	GRGCYC	1 cut(s)	357
Eco31I	GGTCTC	2 cut(s)	49, 447
Eco47I	GGWCC	2 cut(s)	388, 623
Eco47III	AGCGCT	1 cut(s)	993
Eco57I	CTGAAG	2 cut(s)	980, 1619
Eco88I	CYCGRG	2 cut(s)	243, 506
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRII	CCWGG	7 cut(s)	110, 363, 390, 1369, 1393, 1588, 1667
EcoT14I	CCWWGG	3 cut(s)	174, 381, 1131
EcoT22I	ATGCAT	1 cut(s)	1297
EcoT38I	GRGCYC	1 cut(s)	357
EgeI	GGCGCC	2 cut(s)	468, 651
EheI	GGCGCC	2 cut(s)	468, 651
ErhI	CCWWGG	3 cut(s)	174, 381, 1131
FaeI	CATG	5 cut(s)	385, 1204, 1295, 1379, 1407
FatI	CATG	5 cut(s)	381, 1200, 1291, 1375, 1403
FauI	CCCGC	2 cut(s)	144, 456
FbaI	TGATCA	1 cut(s)	709
FokI	GGATG	4 cut(s)	320, 442, 1055, 1286
FriOI	GRGCYC	1 cut(s)	357
FspBI	CTAG	6 cut(s)	293, 792, 900, 921, 1503, 1703
GlaI	GCGC	7 cut(s)	150, 193, 403, 468, 513, 651, 993
GsuI	CTGGAG	3 cut(s)	251, 347, 413
HaeII	RGCGCY	5 cut(s)	195, 470, 515, 653, 995
HapII	CCGG	8 cut(s)	15, 59, 106, 117, 358, 560, 1602, 1617
HhaI	GCGC	7 cut(s)	151, 194, 404, 469, 514, 652, 994
Hin1I	GRCGYC	3 cut(s)	467, 534, 650
Hin1II	CATG	5 cut(s)	385, 1204, 1295, 1379, 1407
Hin6I	GCGC	7 cut(s)	149, 192, 402, 467, 512, 650, 992
HinP1I	GCGC	7 cut(s)	149, 192, 402, 467, 512, 650, 992
HincII	GTYRAC	1 cut(s)	1567
HindII	GTYRAC	1 cut(s)	1567
HpaII	CCGG	8 cut(s)	15, 59, 106, 117, 358, 560, 1602, 1617
HphI	GGTGA	3 cut(s)	743, 1255, 1421
Hpy166II	GTNNAC	6 cut(s)	268, 327, 803, 1264, 1324, 1567
Hpy188III	TCNNGA	6 cut(s)	230, 416, 785, 827, 872, 1376
Hpy8I	GTNNAC	6 cut(s)	268, 327, 803, 1264, 1324, 1567
Hpy99I	CGWCG	7 cut(s)	103, 185, 335, 344, 533, 536, 539
HpyAV	CCTTC	3 cut(s)	217, 229, 811
HpyCH4III	ACNGT	4 cut(s)	630, 1063, 1261, 1480
HpyCH4IV	ACGT	3 cut(s)	76, 264, 534
HpyCH4V	TGCA	6 cut(s)	43, 722, 971, 1189, 1295, 1324
HpyF3I	CTNAG	8 cut(s)	53, 138, 449, 459, 489, 585, 639, 1310
HpySE526I	ACGT	3 cut(s)	76, 264, 534
Hsp92I	GRCGYC	3 cut(s)	467, 534, 650
Hsp92II	CATG	5 cut(s)	385, 1204, 1295, 1379, 1407
HspAI	GCGC	7 cut(s)	149, 192, 402, 467, 512, 650, 992
KasI	GGCGCC	2 cut(s)	466, 649
KroI	GCCGGC	1 cut(s)	559
KroNI	GCCGGC	1 cut(s)	561
Ksp22I	TGATCA	1 cut(s)	709
KspI	CCGCGG	1 cut(s)	50
LguI	GCTCTTC	2 cut(s)	729, 1638
LmnI	GCTCC	5 cut(s)	289, 352, 366, 1278, 1384
Lsp1109I	GCAGC	6 cut(s)	501, 1001, 1069, 1201, 1625, 1717
LweI	GCATC	1 cut(s)	468
MabI	ACCWGGT	2 cut(s)	1393, 1588
MaeI	CTAG	6 cut(s)	293, 792, 900, 921, 1503, 1703
MaeII	ACGT	3 cut(s)	76, 264, 534
MaeIII	GTNAC	4 cut(s)	1336, 1399, 1409, 1495
MbiI	CCGCTC	1 cut(s)	1541
MflI	RGATCY	3 cut(s)	238, 1127, 1505
MhlI	GDGCHC	4 cut(s)	357, 1283, 1326, 1519
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	8 cut(s)	705, 756, 841, 877, 903, 1002, 1220, 1327
MluNI	TGGCCA	1 cut(s)	173
Mly113I	GGCGCC	2 cut(s)	467, 650
MlyI	GAGTC	5 cut(s)	31, 76, 77, 322, 1478
MmeI	TCCRAC	5 cut(s)	59, 122, 552, 580, 1327
Mox20I	TGGCCA	1 cut(s)	173
Mph1103I	ATGCAT	1 cut(s)	1297
MroNI	GCCGGC	1 cut(s)	559
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	8 cut(s)	201, 375, 552, 669, 1011, 1068, 1572, 1659
Msp20I	TGGCCA	1 cut(s)	173
MspA1I	CMGCKG	2 cut(s)	49, 543
MspCI	CTTAAG	1 cut(s)	668
MspI	CCGG	8 cut(s)	15, 59, 106, 117, 358, 560, 1602, 1617
Mva1269I	GAATGC	1 cut(s)	1431
MvaI	CCWGG	7 cut(s)	112, 365, 392, 1371, 1395, 1590, 1669
MvnI	CGCG	4 cut(s)	49, 151, 344, 404
NaeI	GCCGGC	1 cut(s)	561
NarI	GGCGCC	2 cut(s)	467, 650
NciI	CCSGG	4 cut(s)	106, 117, 358, 1603
NcoI	CCATGG	1 cut(s)	381
NgoMIV	GCCGGC	1 cut(s)	559
NlaIII	CATG	5 cut(s)	385, 1204, 1295, 1379, 1407
NlaIV	GGNNCC	7 cut(s)	240, 354, 362, 468, 651, 1129, 1724
NmeAIII	GCCGAG	2 cut(s)	190, 593
NmuCI	GTSAC	4 cut(s)	1336, 1399, 1409, 1495
NsiI	ATGCAT	1 cut(s)	1297
NspI	RCATGY	2 cut(s)	1295, 1407
PaeI	GCATGC	1 cut(s)	1295
PaeR7I	CTCGAG	1 cut(s)	506
PagI	TCATGA	1 cut(s)	1375
PceI	AGGCCT	2 cut(s)	821, 1366
PciI	ACATGT	1 cut(s)	1403
PciSI	GCTCTTC	2 cut(s)	729, 1638
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PctI	GAATGC	1 cut(s)	1431
PdiI	GCCGGC	1 cut(s)	561
PfeI	GAWTC	6 cut(s)	412, 603, 678, 924, 1205, 1246
PflFI	GACNNNGTC	2 cut(s)	533, 536
Ple19I	CGATCG	3 cut(s)	124, 1445, 1720
PleI	GAGTC	5 cut(s)	31, 75, 77, 321, 1477
PluTI	GGCGCC	2 cut(s)	470, 653
PpsI	GAGTC	5 cut(s)	31, 75, 77, 321, 1477
Ppu21I	YACGTR	2 cut(s)	77, 265
PpuMI	RGGWCCY	1 cut(s)	388
PscI	ACATGT	1 cut(s)	1403
PshBI	ATTAAT	1 cut(s)	1572
Psp5II	RGGWCCY	1 cut(s)	388
Psp6I	CCWGG	7 cut(s)	110, 363, 390, 1369, 1393, 1588, 1667
PspGI	CCWGG	7 cut(s)	110, 363, 390, 1369, 1393, 1588, 1667
PspN4I	GGNNCC	7 cut(s)	240, 354, 362, 468, 651, 1129, 1724
PspPI	GGNCC	5 cut(s)	103, 108, 114, 388, 623
PspPPI	RGGWCCY	1 cut(s)	388
PspXI	VCTCGAGB	1 cut(s)	506
PstI	CTGCAG	1 cut(s)	973
PsuI	RGATCY	3 cut(s)	238, 1127, 1505
PsyI	GACNNNGTC	2 cut(s)	533, 536
PvuI	CGATCG	3 cut(s)	124, 1445, 1720
RsaI	GTAC	7 cut(s)	263, 278, 781, 813, 1265, 1353, 1656
RsaNI	GTAC	7 cut(s)	262, 277, 780, 812, 1264, 1352, 1655
SacII	CCGCGG	1 cut(s)	50
SapI	GCTCTTC	2 cut(s)	729, 1638
SaqAI	TTAA	8 cut(s)	201, 375, 552, 669, 1011, 1068, 1572, 1659
Sau96I	GGNCC	5 cut(s)	103, 108, 114, 388, 623
ScaI	AGTACT	1 cut(s)	1353
SchI	GAGTC	5 cut(s)	31, 76, 77, 322, 1478
SduI	GDGCHC	4 cut(s)	357, 1283, 1326, 1519
SexAI	ACCWGGT	2 cut(s)	1393, 1588
SfaNI	GCATC	1 cut(s)	468
SfcI	CTRYAG	3 cut(s)	969, 1430, 1509
SfiI	GGCCNNNNNGGCC	1 cut(s)	170
SfoI	GGCGCC	2 cut(s)	468, 651
Sfr274I	CTCGAG	1 cut(s)	506
Sfr303I	CCGCGG	1 cut(s)	50
SgrBI	CCGCGG	1 cut(s)	50
SinI	GGWCC	2 cut(s)	388, 623
SlaI	CTCGAG	1 cut(s)	506
SmlI	CTYRAG	4 cut(s)	506, 518, 668, 870
SmoI	CTYRAG	4 cut(s)	506, 518, 668, 870
SnaBI	TACGTA	1 cut(s)	77
SphI	GCATGC	1 cut(s)	1295
Sse9I	AATT	8 cut(s)	705, 756, 841, 877, 903, 1002, 1220, 1327
SseBI	AGGCCT	2 cut(s)	821, 1366
SspDI	GGCGCC	2 cut(s)	466, 649
SspMI	CTAG	6 cut(s)	293, 792, 900, 921, 1503, 1703
StuI	AGGCCT	2 cut(s)	821, 1366
StyI	CCWWGG	3 cut(s)	174, 381, 1131
TaaI	ACNGT	4 cut(s)	630, 1063, 1261, 1480
TaiI	ACGT	3 cut(s)	79, 267, 537
TaqI	TCGA	3 cut(s)	507, 807, 1472
TaqII	GACCGA	1 cut(s)	1479
TasI	AATT	8 cut(s)	705, 756, 841, 877, 903, 1002, 1220, 1327
TatI	WGTACW	2 cut(s)	811, 1351
TauI	GCSGC	4 cut(s)	52, 65, 371, 559
TfiI	GAWTC	6 cut(s)	412, 603, 678, 924, 1205, 1246
Tru1I	TTAA	8 cut(s)	201, 375, 552, 669, 1011, 1068, 1572, 1659
Tru9I	TTAA	8 cut(s)	201, 375, 552, 669, 1011, 1068, 1572, 1659
TscAI	CASTG	3 cut(s)	901, 1066, 1266
TseFI	GTSAC	4 cut(s)	1336, 1399, 1409, 1495
TseI	GCWGC	6 cut(s)	514, 989, 1082, 1189, 1613, 1730
Tsp45I	GTSAC	4 cut(s)	1336, 1399, 1409, 1495
TspDTI	ATGAA	4 cut(s)	670, 870, 1333, 1722
TspGWI	ACGGA	4 cut(s)	76, 1281, 1298, 1642
TspRI	CASTG	3 cut(s)	901, 1066, 1266
Tth111I	GACNNNGTC	2 cut(s)	533, 536
Vha464I	CTTAAG	1 cut(s)	668
VneI	GTGCAC	1 cut(s)	1322
VpaK11BI	GGWCC	2 cut(s)	388, 623
VspI	ATTAAT	1 cut(s)	1572
XapI	RAATTY	3 cut(s)	841, 877, 1220
XceI	RCATGY	2 cut(s)	1295, 1407
XcmI	CCANNNNNNNNNTGG	2 cut(s)	388, 936
XhoI	CTCGAG	1 cut(s)	506
XspI	CTAG	6 cut(s)	293, 792, 900, 921, 1503, 1703
ZraI	GACGTC	1 cut(s)	535
ZrmI	AGTACT	1 cut(s)	1353
Zsp2I	ATGCAT	1 cut(s)	1297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.