Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003547

Physical Location & Seq

Genomic Coordinates Reverse (-)

49201553 .. 49207783

Gene Structure 6231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG429700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGGCTTCAATTTCCGGCATTTGTTCCTCTTCTCCGACTCTCAAGCCGCGGCTGAGGCCGCCGGCGGCGAGTCTATTACGTAAAGACTCCGTTTCGTTTCCGACGGCCCGGCCGAGGCCCGGCGATCGGAGCTTGTTCGCTCAGTCGGTGGCGCGGGAGATCAAGGCCGAGTTGGCAAAGGCTGACGGCGATGGCGCTGTGATTAAGAACAAGAAGAAGAAGGTTCTGGAGAAGGATCCTCGGGCGCTGTGGCGGAGGTACGTGGACTGGTTGTACCAGCACAAGGAGCTAGGGCTGTATTTGGATGTGAGTCGGGTCGGGTTTACCGACGAGTTCGTCGCGGAAATGGAGCCCCGGTTCCAGGCGGCGTTTAAGGCGATGGAGGACCTGGAGAAAGGCGCGATTGCGAATCCCGATGAGGGGCGGATGGTCGGGCATTACTGGCTGAGAGACCCTAAGCGGGCGCCGAAACCGGTGCTCACGGCTCAGATTGAGAACACGCTCGAGGCGCTGCTTAAGTTTTCCGGCGACGTCGTCAGCGGTAAGATTAAGCCGCCGGCTTCTCCGGAGGGTCGTTTTACTCAGGTTCTTTCGGTTGGAATCGGAGGCTCGGCACTTGGACCACAGTTTGTTGCTGAGGCATTGGCGCCTGATGTTCCTCCTCTTAAGATACGATTCATTGACAATACCGATCCAGCAGGAATTGATCATCAGATTGCACAGCTCGGTGAAGAGCTGGCTTCTACTCTTGTCATTGTGATTTCAAAGAGTGGAGGTACTCCTGAAACTAGAAATGGTTTACTCGAAGTACAGAAGGCCTTTCGTGAGGCTGGCCTAAATTTCGCAAAACAGGGTGTGGCTATAACTCAAGAAAATTCATTATTAGACAACACTGCTAGAATTGAGGGCTGGTTAGCTAGATTCCCAATGTTTGACTGGGTTGGTGGAAGAACATCTGAAATGTCTGCAGTTGGTCTTCTTCCAGCAGCGCTTCAGGGAATTGACATTAAAGAAATGCTCGCTGGTGGAAAGTTGATGGATGAGGCTAATAGAACCACTGTGGTTAAGAATAATCCTGCCGCCTTGCTTGCTTTATGCTGGTATTGGGCTACTGATGGATTGGGATCCAAGGATATGGTTGTTCTTCCTTACAAGGACAGCCTATTATTATTTAGTCGGTATTTGCAGCAGTTGGTCATGGAATCTATTGGGAAAGAATTTGACCTTGATGGTAATCGGGTGAATCAAGGACTTACAGTGTATGGAAATAAAGGGAGCACGGATCAGCATGCATACATCCAACAACTGAGAGATGGCGTGCACAATTTCTTTGTGACATTCATTGAAGTACTACGAGATAGGCCTCCTGGTCATGATTGGGAGCTTGAACCAGGTGTCACATGTGGTGACTATCTATTTGGAATGCTACAGGGAACACGATCGGCTCTTTATTCTAATGACCGAGAGTCGATTACGGTTTCTGTGGAAGAAGTGACACCTAGATCTGTAGGTGCTCTTATAGCACTTTATGAGAGAGCGGTTGGGATTTATGCCTCACTTGTCAACATTAATGCATACCATCAACCTGGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

531

Amino Acids

58.27

Weight (kDa)

6.45

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGI	PF00342	126 - 452	1.1e-47	Phosphoglucose isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24620 AT4G24620
fragaria_vesca	FvH4_5g35680 FvH4_5g35680
malus_domestica	MD08G1194100.v1.1 MD15G1382200.v1.1
prunus_persica	Prupe.1G528400_v2.0.a1 Prupe.1G528400_v2.0.a1
pyrus_communis	pycom15g34220
rosa_chinensis	RchiOBHm_Chr7g0237251 RchiOBHm_Chr7g0237271 RchiOBHm_Chr7g0237281 RchiOBHm_Chr7g0237311 RchiOBHm_Chr7g0237321
rosa_laevigata	RLG00000001012 RLG00000001018
rosa_multiflora	Rmu_sc0002923.1_g000043 Rmu_sc0002923.1_g000049 Rmu_sc0006438.1_g000001 Rmu_sc0006438.1_g000006 Rmu_sc0006438.1_g000007
rosa_roxburghii	Rroxscaffold_3G00224320
rosa_rugosa	Rorug07G0302600 Rorug07G0302700
rosa_samantha	Rh7AG459300 Rh7AG459500 Rh7AG459600 Rh7AG459700 Rh7AG459800 Rh7BG429700 Rh7CG477100 Rh7DG446400
rosa_wichuraiana	Rw0G003870 Rw7G038060 Rw7G038080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	335
AatII	GACGTC	1 cut(s)	534
AccB1I	GGYRCC	2 cut(s)	463, 646
AccBSI	CCGCTC	1 cut(s)	1538
AccII	CGCG	4 cut(s)	49, 154, 341, 401
AccIII	TCCGGA	1 cut(s)	565
AclWI	GGATC	6 cut(s)	230, 243, 686, 1119, 1132, 1290
AcoI	YGGCCR	1 cut(s)	110
AcsI	RAATTY	3 cut(s)	838, 874, 1217
AcuI	CTGAAG	1 cut(s)	977
AcyI	GRCGYC	3 cut(s)	464, 531, 647
AfaI	GTAC	5 cut(s)	260, 275, 778, 810, 1350
AfeI	AGCGCT	1 cut(s)	990
AfiI	CCNNNNNNNGG	8 cut(s)	114, 119, 126, 283, 361, 419, 420, 460
AflII	CTTAAG	2 cut(s)	515, 665
AflIII	ACRYGT	1 cut(s)	1400
AgeI	ACCGGT	1 cut(s)	472
AgsI	TTSAA	4 cut(s)	9, 765, 1346, 1388
AhdI	GACNNNNNGTC	1 cut(s)	1465
AjnI	CCWGG	5 cut(s)	360, 387, 1366, 1390, 1585
AloI	GAACNNNNNNTCC	2 cut(s)	341, 373
AluBI	AGCT	6 cut(s)	132, 289, 724, 736, 917, 1384
AluI	AGCT	6 cut(s)	132, 289, 724, 736, 917, 1384
Alw21I	GWGCWC	4 cut(s)	480, 1280, 1323, 1516
Alw26I	GTCTC	1 cut(s)	444
Alw44I	GTGCAC	1 cut(s)	1319
AlwI	GGATC	6 cut(s)	230, 243, 686, 1119, 1132, 1290
Ama87I	CYCGRG	2 cut(s)	240, 503
Aor13HI	TCCGGA	1 cut(s)	565
Aor51HI	AGCGCT	1 cut(s)	990
AoxI	GGCC	8 cut(s)	56, 105, 110, 116, 165, 816, 832, 1361
ApaLI	GTGCAC	1 cut(s)	1319
ApeKI	GCWGC	3 cut(s)	511, 986, 1186
ApoI	RAATTY	3 cut(s)	838, 874, 1217
ArsI	GACNNNNNNTTYG	2 cut(s)	1400, 1432
AseI	ATTAAT	1 cut(s)	1569
AsiGI	ACCGGT	1 cut(s)	472
AspLEI	GCGC	8 cut(s)	154, 197, 247, 401, 466, 511, 649, 991
AspS9I	GGNCC	4 cut(s)	106, 117, 385, 620
AsuC2I	CCSGG	3 cut(s)	109, 120, 355
AsuHPI	GGTGA	3 cut(s)	740, 1252, 1418
AvaI	CYCGRG	2 cut(s)	240, 503
AvaII	GGWCC	2 cut(s)	385, 620
BaeGI	GKGCMC	1 cut(s)	1323
BamHI	GGATCC	2 cut(s)	235, 1124
BanI	GGYRCC	2 cut(s)	463, 646
BanII	GRGCYC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	968
Bbv12I	GWGCWC	4 cut(s)	480, 1280, 1323, 1516
BbvCI	CCTCAGC	2 cut(s)	53, 636
BbvI	GCAGC	3 cut(s)	498, 998, 1198
BccI	CCATC	8 cut(s)	185, 373, 421, 1030, 1109, 1223, 1307, 1587
BceAI	ACGGC	3 cut(s)	120, 202, 498
BcgI	CGANNNNNNTGC	2 cut(s)	457, 491
BciT130I	CCWGG	5 cut(s)	362, 389, 1368, 1392, 1587
BclI	TGATCA	1 cut(s)	706
BcnI	CCSGG	3 cut(s)	109, 120, 355
BcoDI	GTCTC	1 cut(s)	444
BfaI	CTAG	5 cut(s)	290, 789, 897, 918, 1500
BfmI	CTRYAG	3 cut(s)	966, 1427, 1506
BfoI	RGCGCY	6 cut(s)	198, 248, 467, 512, 650, 992
BfrI	CTTAAG	2 cut(s)	515, 665
BglI	GCCNNNNNGGC	1 cut(s)	173
BglII	AGATCT	1 cut(s)	1502
BmcAI	AGTACT	1 cut(s)	1350
Bme1390I	CCNGG	8 cut(s)	109, 120, 355, 362, 389, 1368, 1392, 1587
Bme18I	GGWCC	2 cut(s)	385, 620
BmeRI	GACNNNNNGTC	1 cut(s)	1465
BmeT110I	CYCGRG	2 cut(s)	240, 503
BmgT120I	GGNCC	4 cut(s)	106, 117, 385, 620
BmiI	GGNNCC	6 cut(s)	237, 351, 359, 465, 648, 1126
BmrFI	CCNGG	8 cut(s)	109, 120, 355, 362, 389, 1368, 1392, 1587
BmrI	ACTGGG	1 cut(s)	946
BmuI	ACTGGG	1 cut(s)	946
BpiI	GAAGAC	1 cut(s)	968
BpmI	CTGGAG	2 cut(s)	248, 410
Bpu10I	CCTNAGC	3 cut(s)	53, 456, 636
BpuEI	CTTGAG	2 cut(s)	26, 852
BpuMI	CCSGG	3 cut(s)	109, 120, 355
BsaAI	YACGTR	2 cut(s)	80, 262
BsaBI	GATNNNNATC	2 cut(s)	1123, 1233
BsaHI	GRCGYC	3 cut(s)	464, 531, 647
BsaI	GGTCTC	1 cut(s)	444
BsaJI	CCNNGG	5 cut(s)	47, 113, 239, 353, 1128
BsaWI	WCCGGW	2 cut(s)	472, 565
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	8 cut(s)	114, 119, 126, 283, 361, 419, 420, 460
Bse118I	RCCGGY	3 cut(s)	61, 472, 556
Bse1I	ACTGG	3 cut(s)	272, 446, 941
Bse8I	GATNNNNATC	2 cut(s)	1123, 1233
BseAI	TCCGGA	1 cut(s)	565
BseBI	CCWGG	5 cut(s)	362, 389, 1368, 1392, 1587
BseDI	CCNNGG	5 cut(s)	47, 113, 239, 353, 1128
BseGI	GGATG	4 cut(s)	310, 432, 1045, 1296
BseJI	GATNNNNATC	2 cut(s)	1123, 1233
BseLI	CCNNNNNNNGG	8 cut(s)	114, 119, 126, 283, 361, 419, 420, 460
BseMII	CTCAG	7 cut(s)	44, 155, 437, 500, 596, 627, 1298
BseNI	ACTGG	3 cut(s)	272, 446, 941
BseRI	GAGGAG	1 cut(s)	651
BseSI	GKGCMC	1 cut(s)	1323
BseX3I	CGGCCG	1 cut(s)	110
BseXI	GCAGC	3 cut(s)	498, 998, 1198
Bsh1236I	CGCG	4 cut(s)	49, 154, 341, 401
Bsh1285I	CGRYCG	3 cut(s)	113, 127, 1442
BshFI	GGCC	8 cut(s)	58, 107, 112, 118, 167, 818, 834, 1363
BshNI	GGYRCC	2 cut(s)	463, 646
BshTI	ACCGGT	1 cut(s)	472
BsiEI	CGRYCG	3 cut(s)	113, 127, 1442
BsiHKAI	GWGCWC	4 cut(s)	480, 1280, 1323, 1516
BsiHKCI	CYCGRG	2 cut(s)	240, 503
BsiSI	CCGG	9 cut(s)	15, 62, 109, 120, 355, 473, 525, 557, 566
BslI	CCNNNNNNNGG	8 cut(s)	114, 119, 126, 283, 361, 419, 420, 460
BsmAI	GTCTC	1 cut(s)	444
BsmI	GAATGC	1 cut(s)	1428
BsnI	GGCC	8 cut(s)	58, 107, 112, 118, 167, 818, 834, 1363
Bso31I	GGTCTC	1 cut(s)	444
BsoBI	CYCGRG	2 cut(s)	240, 503
Bsp1286I	GDGCHC	5 cut(s)	354, 480, 1280, 1323, 1516
Bsp13I	TCCGGA	1 cut(s)	565
Bsp143I	GATC	9 cut(s)	124, 159, 235, 691, 706, 1124, 1282, 1439, 1502
BspANI	GGCC	8 cut(s)	58, 107, 112, 118, 167, 818, 834, 1363
BspCNI	CTCAG	7 cut(s)	45, 154, 438, 499, 595, 628, 1299
BspEI	TCCGGA	1 cut(s)	565
BspFNI	CGCG	4 cut(s)	49, 154, 341, 401
BspHI	TCATGA	1 cut(s)	1372
BspLI	GGNNCC	6 cut(s)	237, 351, 359, 465, 648, 1126
BspMAI	CTGCAG	1 cut(s)	970
BspPI	GGATC	6 cut(s)	230, 243, 686, 1119, 1132, 1290
BspQI	GCTCTTC	1 cut(s)	726
BspT107I	GGYRCC	2 cut(s)	463, 646
BspTI	CTTAAG	2 cut(s)	515, 665
BspTNI	GGTCTC	1 cut(s)	444
BsrBI	CCGCTC	1 cut(s)	1538
BsrFI	RCCGGY	3 cut(s)	61, 472, 556
BsrI	ACTGG	3 cut(s)	272, 446, 941
BssAI	RCCGGY	3 cut(s)	61, 472, 556
BssECI	CCNNGG	5 cut(s)	47, 113, 239, 353, 1128
BssMI	GATC	9 cut(s)	124, 159, 235, 691, 706, 1124, 1282, 1439, 1502
BssNI	GRCGYC	3 cut(s)	464, 531, 647
BssT1I	CCWWGG	1 cut(s)	1128
Bst2UI	CCWGG	5 cut(s)	362, 389, 1368, 1392, 1587
Bst4CI	ACNGT	4 cut(s)	627, 1060, 1258, 1477
Bst6I	CTCTTC	2 cut(s)	34, 726
BstACI	GRCGYC	3 cut(s)	464, 531, 647
BstAFI	CTTAAG	2 cut(s)	515, 665
BstBAI	YACGTR	2 cut(s)	80, 262
BstC8I	GCNNGC	9 cut(s)	63, 462, 558, 738, 832, 1020, 1089, 1290, 1319
BstDEI	CTNAG	8 cut(s)	53, 141, 446, 456, 486, 582, 636, 1307
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	4 cut(s)	310, 432, 1045, 1296
BstFNI	CGCG	4 cut(s)	49, 154, 341, 401
BstH2I	RGCGCY	6 cut(s)	198, 248, 467, 512, 650, 992
BstHHI	GCGC	8 cut(s)	154, 197, 247, 401, 466, 511, 649, 991
BstKTI	GATC	9 cut(s)	127, 162, 238, 694, 709, 1127, 1285, 1442, 1505
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	9 cut(s)	124, 159, 235, 691, 706, 1124, 1282, 1439, 1502
BstMCI	CGRYCG	3 cut(s)	113, 127, 1442
BstNI	CCWGG	5 cut(s)	362, 389, 1368, 1392, 1587
BstNSI	RCATGY	2 cut(s)	1292, 1404
BstSCI	CCNGG	8 cut(s)	107, 118, 353, 360, 387, 1366, 1390, 1585
BstSFI	CTRYAG	3 cut(s)	966, 1427, 1506
BstSLI	GKGCMC	1 cut(s)	1323
BstSNI	TACGTA	1 cut(s)	80
BstUI	CGCG	4 cut(s)	49, 154, 341, 401
BstV1I	GCAGC	3 cut(s)	498, 998, 1198
BstV2I	GAAGAC	1 cut(s)	968
BstX2I	RGATCY	3 cut(s)	235, 1124, 1502
BstXI	CCANNNNNNTGG	2 cut(s)	1135, 1586
BstYI	RGATCY	3 cut(s)	235, 1124, 1502
BstZI	CGGCCG	1 cut(s)	110
BsuRI	GGCC	8 cut(s)	58, 107, 112, 118, 167, 818, 834, 1363
BtgI	CCRYGG	1 cut(s)	47
BtgZI	GCGATG	2 cut(s)	204, 392
BtsCI	GGATG	4 cut(s)	310, 432, 1045, 1296
BtsI	GCAGTG	1 cut(s)	891
BtsIMutI	CAGTG	3 cut(s)	891, 1056, 1263
Cac8I	GCNNGC	9 cut(s)	63, 462, 558, 738, 832, 1020, 1089, 1290, 1319
CciI	TCATGA	1 cut(s)	1372
CfoI	GCGC	8 cut(s)	154, 197, 247, 401, 466, 511, 649, 991
Cfr10I	RCCGGY	3 cut(s)	61, 472, 556
Cfr13I	GGNCC	4 cut(s)	106, 117, 385, 620
Cfr42I	CCGCGG	1 cut(s)	50
CsiI	ACCWGGT	2 cut(s)	1390, 1585
Csp6I	GTAC	5 cut(s)	259, 274, 777, 809, 1349
CspAI	ACCGGT	1 cut(s)	472
CviAII	CATG	4 cut(s)	1198, 1289, 1373, 1401
CviQI	GTAC	5 cut(s)	259, 274, 777, 809, 1349
DdeI	CTNAG	8 cut(s)	53, 141, 446, 456, 486, 582, 636, 1307
DinI	GGCGCC	2 cut(s)	465, 648
DpnI	GATC	9 cut(s)	126, 161, 237, 693, 708, 1126, 1284, 1441, 1504
DpnII	GATC	9 cut(s)	124, 159, 235, 691, 706, 1124, 1282, 1439, 1502
DrdI	GACNNNNNNGTC	1 cut(s)	335
DriI	GACNNNNNGTC	1 cut(s)	1465
DseDI	GACNNNNNNGTC	1 cut(s)	335
EaeI	YGGCCR	1 cut(s)	110
EagI	CGGCCG	1 cut(s)	110
Eam1104I	CTCTTC	2 cut(s)	34, 726
Eam1105I	GACNNNNNGTC	1 cut(s)	1465
EarI	CTCTTC	2 cut(s)	34, 726
EciI	GGCGGA	2 cut(s)	268, 439
EclXI	CGGCCG	1 cut(s)	110
Eco105I	TACGTA	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	1128
Eco147I	AGGCCT	2 cut(s)	818, 1363
Eco24I	GRGCYC	1 cut(s)	354
Eco31I	GGTCTC	1 cut(s)	444
Eco47I	GGWCC	2 cut(s)	385, 620
Eco47III	AGCGCT	1 cut(s)	990
Eco52I	CGGCCG	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	977
Eco88I	CYCGRG	2 cut(s)	240, 503
EcoO109I	RGGNCCY	1 cut(s)	385
EcoRII	CCWGG	5 cut(s)	360, 387, 1366, 1390, 1585
EcoT14I	CCWWGG	1 cut(s)	1128
EcoT22I	ATGCAT	2 cut(s)	1294, 1576
EcoT38I	GRGCYC	1 cut(s)	354
EgeI	GGCGCC	2 cut(s)	465, 648
EheI	GGCGCC	2 cut(s)	465, 648
ErhI	CCWWGG	1 cut(s)	1128
FaeI	CATG	4 cut(s)	1201, 1292, 1376, 1404
FatI	CATG	4 cut(s)	1197, 1288, 1372, 1400
FauI	CCCGC	2 cut(s)	147, 453
FbaI	TGATCA	1 cut(s)	706
FokI	GGATG	4 cut(s)	317, 439, 1052, 1283
FriOI	GRGCYC	1 cut(s)	354
FspBI	CTAG	5 cut(s)	290, 789, 897, 918, 1500
GlaI	GCGC	8 cut(s)	153, 196, 246, 400, 465, 510, 648, 990
GsuI	CTGGAG	2 cut(s)	248, 410
HaeII	RGCGCY	6 cut(s)	198, 248, 467, 512, 650, 992
HaeIII	GGCC	8 cut(s)	58, 107, 112, 118, 167, 818, 834, 1363
HapII	CCGG	9 cut(s)	15, 62, 109, 120, 355, 473, 525, 557, 566
HhaI	GCGC	8 cut(s)	154, 197, 247, 401, 466, 511, 649, 991
Hin1I	GRCGYC	3 cut(s)	464, 531, 647
Hin1II	CATG	4 cut(s)	1201, 1292, 1376, 1404
Hin6I	GCGC	8 cut(s)	152, 195, 245, 399, 464, 509, 647, 989
HinP1I	GCGC	8 cut(s)	152, 195, 245, 399, 464, 509, 647, 989
HincII	GTYRAC	1 cut(s)	1564
HindII	GTYRAC	1 cut(s)	1564
HpaII	CCGG	9 cut(s)	15, 62, 109, 120, 355, 473, 525, 557, 566
HphI	GGTGA	3 cut(s)	740, 1252, 1418
Hpy166II	GTNNAC	5 cut(s)	265, 324, 800, 1321, 1564
Hpy188I	TCNGA	7 cut(s)	36, 102, 129, 489, 605, 714, 958
Hpy188III	TCNNGA	7 cut(s)	227, 413, 566, 782, 824, 869, 1373
Hpy8I	GTNNAC	5 cut(s)	265, 324, 800, 1321, 1564
Hpy99I	CGWCG	5 cut(s)	106, 332, 341, 533, 536
HpyAV	CCTTC	3 cut(s)	214, 226, 808
HpyCH4III	ACNGT	4 cut(s)	627, 1060, 1258, 1477
HpyCH4IV	ACGT	3 cut(s)	79, 261, 531
HpyCH4V	TGCA	6 cut(s)	719, 968, 1186, 1292, 1321, 1574
HpyF3I	CTNAG	8 cut(s)	53, 141, 446, 456, 486, 582, 636, 1307
HpySE526I	ACGT	3 cut(s)	79, 261, 531
Hsp92I	GRCGYC	3 cut(s)	464, 531, 647
Hsp92II	CATG	4 cut(s)	1201, 1292, 1376, 1404
HspAI	GCGC	8 cut(s)	152, 195, 245, 399, 464, 509, 647, 989
KasI	GGCGCC	2 cut(s)	463, 646
Kpn2I	TCCGGA	1 cut(s)	565
KroI	GCCGGC	2 cut(s)	61, 556
KroNI	GCCGGC	2 cut(s)	63, 558
Ksp22I	TGATCA	1 cut(s)	706
KspI	CCGCGG	1 cut(s)	50
Kzo9I	GATC	9 cut(s)	124, 159, 235, 691, 706, 1124, 1282, 1439, 1502
LguI	GCTCTTC	1 cut(s)	726
LmnI	GCTCC	5 cut(s)	129, 286, 349, 1275, 1381
Lsp1109I	GCAGC	3 cut(s)	498, 998, 1198
MabI	ACCWGGT	2 cut(s)	1390, 1585
MaeI	CTAG	5 cut(s)	290, 789, 897, 918, 1500
MaeII	ACGT	3 cut(s)	79, 261, 531
MaeIII	GTNAC	4 cut(s)	1333, 1396, 1406, 1492
MalI	GATC	9 cut(s)	126, 161, 237, 693, 708, 1126, 1284, 1441, 1504
MbiI	CCGCTC	1 cut(s)	1538
MboI	GATC	9 cut(s)	124, 159, 235, 691, 706, 1124, 1282, 1439, 1502
MboII	GAAGA	9 cut(s)	21, 226, 229, 743, 960, 968, 971, 1136, 1499
MflI	RGATCY	3 cut(s)	235, 1124, 1502
MhlI	GDGCHC	5 cut(s)	354, 480, 1280, 1323, 1516
MluCI	AATT	8 cut(s)	9, 702, 838, 874, 900, 999, 1217, 1324
Mly113I	GGCGCC	2 cut(s)	464, 647
MlyI	GAGTC	5 cut(s)	31, 79, 80, 319, 1475
MmeI	TCCRAC	4 cut(s)	59, 125, 577, 1324
Mph1103I	ATGCAT	2 cut(s)	1294, 1576
MreI	CGCCGGCG	1 cut(s)	61
MroI	TCCGGA	1 cut(s)	565
MroNI	GCCGGC	2 cut(s)	61, 556
MseI	TTAA	8 cut(s)	204, 372, 516, 549, 666, 1008, 1065, 1569
MspA1I	CMGCKG	2 cut(s)	49, 540
MspCI	CTTAAG	2 cut(s)	515, 665
MspI	CCGG	9 cut(s)	15, 62, 109, 120, 355, 473, 525, 557, 566
MspR9I	CCNGG	8 cut(s)	109, 120, 355, 362, 389, 1368, 1392, 1587
Mva1269I	GAATGC	1 cut(s)	1428
MvaI	CCWGG	5 cut(s)	362, 389, 1368, 1392, 1587
MvnI	CGCG	4 cut(s)	49, 154, 341, 401
NaeI	GCCGGC	2 cut(s)	63, 558
NarI	GGCGCC	2 cut(s)	464, 647
NciI	CCSGG	3 cut(s)	109, 120, 355
NdeII	GATC	9 cut(s)	124, 159, 235, 691, 706, 1124, 1282, 1439, 1502
NgoMIV	GCCGGC	2 cut(s)	61, 556
NlaIII	CATG	4 cut(s)	1201, 1292, 1376, 1404
NlaIV	GGNNCC	6 cut(s)	237, 351, 359, 465, 648, 1126
NmeAIII	GCCGAG	3 cut(s)	138, 193, 590
NmuCI	GTSAC	4 cut(s)	1333, 1396, 1406, 1492
NsiI	ATGCAT	2 cut(s)	1294, 1576
NspI	RCATGY	2 cut(s)	1292, 1404
PaeI	GCATGC	1 cut(s)	1292
PaeR7I	CTCGAG	1 cut(s)	503
PagI	TCATGA	1 cut(s)	1372
PceI	AGGCCT	2 cut(s)	818, 1363
PciI	ACATGT	1 cut(s)	1400
PciSI	GCTCTTC	1 cut(s)	726
PcsI	WCGNNNNNNNCGW	2 cut(s)	110, 324
PctI	GAATGC	1 cut(s)	1428
PdiI	GCCGGC	2 cut(s)	63, 558
PfeI	GAWTC	6 cut(s)	409, 600, 675, 921, 1202, 1243
PflFI	GACNNNGTC	1 cut(s)	533
PinAI	ACCGGT	1 cut(s)	472
Ple19I	CGATCG	2 cut(s)	127, 1442
PleI	GAGTC	5 cut(s)	31, 78, 80, 318, 1474
PluTI	GGCGCC	2 cut(s)	467, 650
PpsI	GAGTC	5 cut(s)	31, 78, 80, 318, 1474
Ppu21I	YACGTR	2 cut(s)	80, 262
PpuMI	RGGWCCY	1 cut(s)	385
PscI	ACATGT	1 cut(s)	1400
PshBI	ATTAAT	1 cut(s)	1569
Psp5II	RGGWCCY	1 cut(s)	385
Psp6I	CCWGG	5 cut(s)	360, 387, 1366, 1390, 1585
PspGI	CCWGG	5 cut(s)	360, 387, 1366, 1390, 1585
PspN4I	GGNNCC	6 cut(s)	237, 351, 359, 465, 648, 1126
PspPI	GGNCC	4 cut(s)	106, 117, 385, 620
PspPPI	RGGWCCY	1 cut(s)	385
PspXI	VCTCGAGB	1 cut(s)	503
PstI	CTGCAG	1 cut(s)	970
PsuI	RGATCY	3 cut(s)	235, 1124, 1502
PsyI	GACNNNGTC	1 cut(s)	533
PvuI	CGATCG	2 cut(s)	127, 1442
RsaI	GTAC	5 cut(s)	260, 275, 778, 810, 1350
RsaNI	GTAC	5 cut(s)	259, 274, 777, 809, 1349
SacII	CCGCGG	1 cut(s)	50
SapI	GCTCTTC	1 cut(s)	726
SaqAI	TTAA	8 cut(s)	204, 372, 516, 549, 666, 1008, 1065, 1569
Sau3AI	GATC	9 cut(s)	124, 159, 235, 691, 706, 1124, 1282, 1439, 1502
Sau96I	GGNCC	4 cut(s)	106, 117, 385, 620
ScaI	AGTACT	1 cut(s)	1350
SchI	GAGTC	5 cut(s)	31, 79, 80, 319, 1475
ScrFI	CCNGG	8 cut(s)	109, 120, 355, 362, 389, 1368, 1392, 1587
SduI	GDGCHC	5 cut(s)	354, 480, 1280, 1323, 1516
SexAI	ACCWGGT	2 cut(s)	1390, 1585
SfcI	CTRYAG	3 cut(s)	966, 1427, 1506
SfoI	GGCGCC	2 cut(s)	465, 648
Sfr274I	CTCGAG	1 cut(s)	503
Sfr303I	CCGCGG	1 cut(s)	50
SgrAI	CRCCGGYG	1 cut(s)	61
SgrBI	CCGCGG	1 cut(s)	50
SinI	GGWCC	2 cut(s)	385, 620
SlaI	CTCGAG	1 cut(s)	503
SmlI	CTYRAG	5 cut(s)	41, 503, 515, 665, 867
SmoI	CTYRAG	5 cut(s)	41, 503, 515, 665, 867
SnaBI	TACGTA	1 cut(s)	80
SphI	GCATGC	1 cut(s)	1292
Sse9I	AATT	8 cut(s)	9, 702, 838, 874, 900, 999, 1217, 1324
SseBI	AGGCCT	2 cut(s)	818, 1363
SspDI	GGCGCC	2 cut(s)	463, 646
SspMI	CTAG	5 cut(s)	290, 789, 897, 918, 1500
StuI	AGGCCT	2 cut(s)	818, 1363
StyD4I	CCNGG	8 cut(s)	107, 118, 353, 360, 387, 1366, 1390, 1585
StyI	CCWWGG	1 cut(s)	1128
TaaI	ACNGT	4 cut(s)	627, 1060, 1258, 1477
TaiI	ACGT	3 cut(s)	82, 264, 534
TaqI	TCGA	3 cut(s)	504, 804, 1469
TaqII	GACCGA	1 cut(s)	1476
TasI	AATT	8 cut(s)	9, 702, 838, 874, 900, 999, 1217, 1324
TatI	WGTACW	2 cut(s)	808, 1348
TauI	GCSGC	7 cut(s)	49, 52, 61, 68, 368, 556, 1082
TfiI	GAWTC	6 cut(s)	409, 600, 675, 921, 1202, 1243
Tru1I	TTAA	8 cut(s)	204, 372, 516, 549, 666, 1008, 1065, 1569
Tru9I	TTAA	8 cut(s)	204, 372, 516, 549, 666, 1008, 1065, 1569
TscAI	CASTG	3 cut(s)	898, 1063, 1263
TseFI	GTSAC	4 cut(s)	1333, 1396, 1406, 1492
TseI	GCWGC	3 cut(s)	511, 986, 1186
Tsp45I	GTSAC	4 cut(s)	1333, 1396, 1406, 1492
TspDTI	ATGAA	3 cut(s)	667, 867, 1330
TspGWI	ACGGA	2 cut(s)	79, 1295
TspRI	CASTG	3 cut(s)	898, 1063, 1263
Tth111I	GACNNNGTC	1 cut(s)	533
Vha464I	CTTAAG	2 cut(s)	515, 665
VneI	GTGCAC	1 cut(s)	1319
VpaK11BI	GGWCC	2 cut(s)	385, 620
VspI	ATTAAT	1 cut(s)	1569
XapI	RAATTY	3 cut(s)	838, 874, 1217
XceI	RCATGY	2 cut(s)	1292, 1404
XcmI	CCANNNNNNNNNTGG	1 cut(s)	933
XhoI	CTCGAG	1 cut(s)	503
XspI	CTAG	5 cut(s)	290, 789, 897, 918, 1500
ZraI	GACGTC	1 cut(s)	532
ZrmI	AGTACT	1 cut(s)	1350
Zsp2I	ATGCAT	2 cut(s)	1294, 1576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.