RLG00000000544

Armadillo/beta-catenin-like repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014865
Physical Location & Seq
Forward (+)
1874881 .. 1880639
5759 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000544

Sequence Viewer

Length: 711 bp
ATGTTGATCGAGGTTCATTCACCGATGAGCTCGCCGACTTCCTCCATCAATCTTCTCCAATTCAACTTCCATCTCAACCACCATGAACGAATTCCGGAAACCTCACCAGCTCGACGTCTGCTTTTTTGCTGCAACCATAAGCTCGAATCGAATCTAATTCAGGCTGCTTCGTTCTTCCAGACCATTCCAACGTCACCAGCTCCACGCCGGCATGTTCCCCAGATCCGGCGCCACTCGCCTACTCCCTTGCTTCACCTGCAGCGCGACTCTTCGCAACTCCGACGAGGACTGGAGTCCCGGTCGTTCACCGGCAGGAAGCTCTACATGCAGAATGACCTCAACATGTCCGCCGCGTCCGTCACCAACCAGCTCTGCGACCTCGACTTGCTGCTCAAATCTGGCGTGCTCCACCAGTCAAACGCCACCTCCGCCATCTCGCCCCTCGCCGCCGCAAACGATGAGTCGCGCAATCACCGTCGAGGCCTCATCGCAGACCCGGAAAACACCTCCTCTGTTTCGGTCTTCATCGGCGCCTTCTCCGACGACGCAGAACCACTCGATCGGCGCCTCCTCCATTTGCCGCTGCTTCTGGAAATATTACGCCATGCCGGAACTGTGGCGGCTGCACAACAGTATCATGGAGAACAGTGGCTGATTGGGGCACTAGGGTTCCAGTCCACAAGTTTATCAAGGTCGCTGGAGGTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

237

Amino Acids

26.3

Weight (kDa)

7.91

Isoelectric Point (pI)

72.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 264
AatII GACGTC 1 cut(s) 118
Acc36I ACCTGC 1 cut(s) 264
AccB1I GGYRCC 3 cut(s) 228, 530, 564
AccII CGCG 3 cut(s) 264, 353, 466
AccIII TCCGGA 1 cut(s) 94
AciI CCGC 7 cut(s) 348, 351, 429, 447, 450, 581, 620
AclWI GGATC 1 cut(s) 217
AcsI RAATTY 1 cut(s) 90
AcyI GRCGYC 4 cut(s) 115, 229, 531, 565
AfiI CCNNNNNNNGG 1 cut(s) 225
AflIII ACRYGT 1 cut(s) 342
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 6 cut(s) 30, 110, 142, 200, 319, 370
AluI AGCT 6 cut(s) 30, 110, 142, 200, 319, 370
Alw21I GWGCWC 2 cut(s) 32, 408
AlwI GGATC 1 cut(s) 217
AlwNI CAGNNNCTG 1 cut(s) 652
Aor13HI TCCGGA 1 cut(s) 94
AoxI GGCC 1 cut(s) 481
ApeKI GCWGC 6 cut(s) 129, 164, 259, 388, 583, 623
ApoI RAATTY 1 cut(s) 90
ArsI GACNNNNNNTTYG 2 cut(s) 446, 478
Asp700I GAANNNNTTC 1 cut(s) 90
AspLEI GCGC 5 cut(s) 231, 264, 468, 533, 567
AsuC2I CCSGG 2 cut(s) 298, 497
AsuHPI GGTGA 7 cut(s) 12, 96, 186, 245, 298, 352, 464
BaeGI GKGCMC 1 cut(s) 664
BaeI ACNNNNGTAYC 2 cut(s) 617, 650
BanI GGYRCC 3 cut(s) 228, 530, 564
BanII GRGCYC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 514
Bbv12I GWGCWC 2 cut(s) 32, 408
BbvI GCAGC 6 cut(s) 116, 151, 271, 375, 570, 610
BccI CCATC 3 cut(s) 53, 78, 440
BcnI CCSGG 2 cut(s) 298, 497
BfaI CTAG 1 cut(s) 665
BfmI CTRYAG 1 cut(s) 257
BfoI RGCGCY 3 cut(s) 232, 534, 568
BfuAI ACCTGC 1 cut(s) 264
Bme1390I CCNGG 2 cut(s) 298, 497
BmiI GGNNCC 4 cut(s) 230, 532, 566, 671
BmrFI CCNGG 2 cut(s) 298, 497
BoxI GACNNNNGTC 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 514
BpmI CTGGAG 1 cut(s) 311
BpuMI CCSGG 2 cut(s) 298, 497
BsaHI GRCGYC 4 cut(s) 115, 229, 531, 565
BsaWI WCCGGW 1 cut(s) 94
BsaXI ACNNNNNCTCC 5 cut(s) 284, 314, 410, 440, 692
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse118I RCCGGY 2 cut(s) 207, 308
Bse1I ACTGG 3 cut(s) 294, 412, 673
BseAI TCCGGA 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 225
BseNI ACTGG 3 cut(s) 294, 412, 673
BseRI GAGGAG 2 cut(s) 499, 560
BseSI GKGCMC 1 cut(s) 664
BseXI GCAGC 6 cut(s) 116, 151, 271, 375, 570, 610
BsgI GTGCAG 1 cut(s) 609
Bsh1236I CGCG 3 cut(s) 264, 353, 466
Bsh1285I CGRYCG 2 cut(s) 302, 562
BshFI GGCC 1 cut(s) 483
BshNI GGYRCC 3 cut(s) 228, 530, 564
BsiEI CGRYCG 2 cut(s) 302, 562
BsiHKAI GWGCWC 2 cut(s) 32, 408
BsiSI CCGG 7 cut(s) 95, 208, 226, 298, 309, 497, 609
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 280
BsnI GGCC 1 cut(s) 483
Bsp1286I GDGCHC 3 cut(s) 32, 408, 664
Bsp13I TCCGGA 1 cut(s) 94
Bsp143I GATC 3 cut(s) 6, 222, 559
BspACI CCGC 7 cut(s) 348, 351, 429, 447, 450, 581, 620
BspANI GGCC 1 cut(s) 483
BspEI TCCGGA 1 cut(s) 94
BspFNI CGCG 3 cut(s) 264, 353, 466
BspLI GGNNCC 4 cut(s) 230, 532, 566, 671
BspMAI CTGCAG 1 cut(s) 261
BspMI ACCTGC 1 cut(s) 264
BspPI GGATC 1 cut(s) 217
BspT107I GGYRCC 3 cut(s) 228, 530, 564
BsrFI RCCGGY 2 cut(s) 207, 308
BsrI ACTGG 3 cut(s) 294, 412, 673
BssAI RCCGGY 2 cut(s) 207, 308
BssMI GATC 3 cut(s) 6, 222, 559
BssNI GRCGYC 4 cut(s) 115, 229, 531, 565
Bst4CI ACNGT 4 cut(s) 476, 616, 633, 648
Bst6I CTCTTC 1 cut(s) 274
BstACI GRCGYC 4 cut(s) 115, 229, 531, 565
BstC8I GCNNGC 3 cut(s) 32, 209, 404
BstFNI CGCG 3 cut(s) 264, 353, 466
BstH2I RGCGCY 3 cut(s) 232, 534, 568
BstHHI GCGC 5 cut(s) 231, 264, 468, 533, 567
BstKTI GATC 3 cut(s) 9, 225, 562
BstMBI GATC 3 cut(s) 6, 222, 559
BstMCI CGRYCG 2 cut(s) 302, 562
BstMWI GCNNNNNNNGC 4 cut(s) 235, 256, 325, 428
BstNSI RCATGY 3 cut(s) 215, 328, 346
BstPAI GACNNNNGTC 1 cut(s) 292
BstSCI CCNGG 2 cut(s) 296, 495
BstSFI CTRYAG 1 cut(s) 257
BstSLI GKGCMC 1 cut(s) 664
BstUI CGCG 3 cut(s) 264, 353, 466
BstV1I GCAGC 6 cut(s) 116, 151, 271, 375, 570, 610
BstV2I GAAGAC 1 cut(s) 514
BstX2I RGATCY 1 cut(s) 222
BstYI RGATCY 1 cut(s) 222
BsuRI GGCC 1 cut(s) 483
BtgZI GCGATG 1 cut(s) 472
BtsIMutI CAGTG 1 cut(s) 653
BveI ACCTGC 1 cut(s) 264
Cac8I GCNNGC 3 cut(s) 32, 209, 404
CaiI CAGNNNCTG 1 cut(s) 652
CfoI GCGC 5 cut(s) 231, 264, 468, 533, 567
Cfr10I RCCGGY 2 cut(s) 207, 308
CseI GACGC 2 cut(s) 342, 554
CviAII CATG 6 cut(s) 83, 212, 325, 343, 605, 638
DinI GGCGCC 3 cut(s) 230, 532, 566
DpnI GATC 3 cut(s) 8, 224, 561
DpnII GATC 3 cut(s) 6, 222, 559
Eam1104I CTCTTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 274
EciI GGCGGA 2 cut(s) 337, 418
Ecl136II GAGCTC 1 cut(s) 30
Eco147I AGGCCT 1 cut(s) 483
Eco24I GRGCYC 1 cut(s) 32
Eco53kI GAGCTC 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 30
EcoRI GAATTC 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 32
EgeI GGCGCC 3 cut(s) 230, 532, 566
EheI GGCGCC 3 cut(s) 230, 532, 566
FaeI CATG 6 cut(s) 86, 215, 328, 346, 608, 641
FaiI YATR 7 cut(s) 84, 138, 213, 326, 344, 606, 639
FaqI GGGAC 1 cut(s) 280
FatI CATG 6 cut(s) 82, 211, 324, 342, 604, 637
FriOI GRGCYC 1 cut(s) 32
FspBI CTAG 1 cut(s) 665
GlaI GCGC 5 cut(s) 230, 263, 467, 532, 566
GsuI CTGGAG 1 cut(s) 311
HaeII RGCGCY 3 cut(s) 232, 534, 568
HaeIII GGCC 1 cut(s) 483
HapII CCGG 7 cut(s) 95, 208, 226, 298, 309, 497, 609
HgaI GACGC 2 cut(s) 342, 554
HhaI GCGC 5 cut(s) 231, 264, 468, 533, 567
Hin1I GRCGYC 4 cut(s) 115, 229, 531, 565
Hin1II CATG 6 cut(s) 86, 215, 328, 346, 608, 641
Hin6I GCGC 5 cut(s) 229, 262, 466, 531, 565
HinP1I GCGC 5 cut(s) 229, 262, 466, 531, 565
HinfI GANTC 5 cut(s) 146, 151, 266, 293, 461
HpaII CCGG 7 cut(s) 95, 208, 226, 298, 309, 497, 609
HphI GGTGA 7 cut(s) 12, 96, 186, 245, 298, 352, 464
Hpy166II GTNNAC 2 cut(s) 306, 678
Hpy188I TCNGA 2 cut(s) 281, 541
Hpy188III TCNNGA 3 cut(s) 95, 178, 590
Hpy8I GTNNAC 2 cut(s) 306, 678
Hpy99I CGWCG 5 cut(s) 117, 285, 480, 545, 548
HpyAV CCTTC 1 cut(s) 544
HpyCH4III ACNGT 4 cut(s) 476, 616, 633, 648
HpyCH4IV ACGT 2 cut(s) 115, 191
HpyCH4V TGCA 4 cut(s) 132, 259, 328, 626
HpyF10VI GCNNNNNNNGC 4 cut(s) 235, 256, 325, 428
HpySE526I ACGT 2 cut(s) 115, 191
Hsp92I GRCGYC 4 cut(s) 115, 229, 531, 565
Hsp92II CATG 6 cut(s) 86, 215, 328, 346, 608, 641
HspAI GCGC 5 cut(s) 229, 262, 466, 531, 565
KasI GGCGCC 3 cut(s) 228, 530, 564
Kpn2I TCCGGA 1 cut(s) 94
KroI GCCGGC 1 cut(s) 207
KroNI GCCGGC 1 cut(s) 209
Kzo9I GATC 3 cut(s) 6, 222, 559
LmnI GCTCC 2 cut(s) 205, 411
Lsp1109I GCAGC 6 cut(s) 116, 151, 271, 375, 570, 610
MaeI CTAG 1 cut(s) 665
MaeII ACGT 2 cut(s) 115, 191
MaeIII GTNAC 2 cut(s) 192, 358
MalI GATC 3 cut(s) 8, 224, 561
MboI GATC 3 cut(s) 6, 222, 559
MboII GAAGA 4 cut(s) 44, 166, 261, 514
MflI RGATCY 1 cut(s) 222
MhlI GDGCHC 3 cut(s) 32, 408, 664
MluCI AATT 3 cut(s) 59, 90, 156
Mly113I GGCGCC 3 cut(s) 229, 531, 565
MlyI GAGTC 3 cut(s) 260, 302, 470
MmeI TCCRAC 3 cut(s) 212, 304, 564
MroI TCCGGA 1 cut(s) 94
MroNI GCCGGC 1 cut(s) 207
MroXI GAANNNNTTC 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 583
MspI CCGG 7 cut(s) 95, 208, 226, 298, 309, 497, 609
MspR9I CCNGG 2 cut(s) 298, 497
MvnI CGCG 3 cut(s) 264, 353, 466
MwoI GCNNNNNNNGC 4 cut(s) 235, 256, 325, 428
NaeI GCCGGC 1 cut(s) 209
NarI GGCGCC 3 cut(s) 229, 531, 565
NciI CCSGG 2 cut(s) 298, 497
NdeII GATC 3 cut(s) 6, 222, 559
NgoMIV GCCGGC 1 cut(s) 207
NlaIII CATG 6 cut(s) 86, 215, 328, 346, 608, 641
NlaIV GGNNCC 4 cut(s) 230, 532, 566, 671
NmuCI GTSAC 2 cut(s) 192, 358
NspI RCATGY 3 cut(s) 215, 328, 346
PaqCI CACCTGC 1 cut(s) 264
PceI AGGCCT 1 cut(s) 483
PciI ACATGT 1 cut(s) 342
PdiI GCCGGC 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 2 cut(s) 146, 151
Ple19I CGATCG 1 cut(s) 562
PleI GAGTC 3 cut(s) 260, 301, 469
PluTI GGCGCC 3 cut(s) 232, 534, 568
PpsI GAGTC 3 cut(s) 260, 301, 469
PscI ACATGT 1 cut(s) 342
PshAI GACNNNNGTC 1 cut(s) 292
Psp124BI GAGCTC 1 cut(s) 32
PspN4I GGNNCC 4 cut(s) 230, 532, 566, 671
PstI CTGCAG 1 cut(s) 261
PstNI CAGNNNCTG 1 cut(s) 652
PsuI RGATCY 1 cut(s) 222
PvuI CGATCG 1 cut(s) 562
SacI GAGCTC 1 cut(s) 32
Sau3AI GATC 3 cut(s) 6, 222, 559
SchI GAGTC 3 cut(s) 260, 302, 470
ScrFI CCNGG 2 cut(s) 298, 497
SduI GDGCHC 3 cut(s) 32, 408, 664
SfcI CTRYAG 1 cut(s) 257
SfoI GGCGCC 3 cut(s) 230, 532, 566
Sse9I AATT 3 cut(s) 59, 90, 156
SseBI AGGCCT 1 cut(s) 483
SsiI CCGC 7 cut(s) 348, 351, 429, 447, 450, 581, 620
SspDI GGCGCC 3 cut(s) 228, 530, 564
SspI AATATT 1 cut(s) 597
SspMI CTAG 1 cut(s) 665
SstI GAGCTC 1 cut(s) 32
StuI AGGCCT 1 cut(s) 483
StyD4I CCNGG 2 cut(s) 296, 495
TaaI ACNGT 4 cut(s) 476, 616, 633, 648
TaiI ACGT 2 cut(s) 118, 194
TaqI TCGA 7 cut(s) 9, 112, 144, 149, 381, 478, 558
TaqII GACCGA 1 cut(s) 508
TasI AATT 3 cut(s) 59, 90, 156
TauI GCSGC 5 cut(s) 353, 449, 452, 583, 623
TfiI GAWTC 2 cut(s) 146, 151
TscAI CASTG 1 cut(s) 653
TseFI GTSAC 2 cut(s) 192, 358
TseI GCWGC 6 cut(s) 129, 164, 259, 388, 583, 623
Tsp45I GTSAC 2 cut(s) 192, 358
TspDTI ATGAA 3 cut(s) 5, 99, 514
TspGWI ACGGA 1 cut(s) 346
TspRI CASTG 1 cut(s) 653
XapI RAATTY 1 cut(s) 90
XceI RCATGY 3 cut(s) 215, 328, 346
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 1 cut(s) 665
ZraI GACGTC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.