Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0014865

Physical Location & Seq

Genomic Coordinates Forward (+)

18691469 .. 18701233

Gene Structure 9765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG205400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCAGAACGACCTCGACATGGCCGCCACGTCCCTCACCAACAGCTCCGCGACCTCGATCTTCTGCTCAGATCTGGCGTGCTCCGTCGTCTCACCCCTCGCCGCTCCAAACATTGAGTCGCGCAAGGCGGTGTTCGAAGCCGGGGCTACCAAATTGAAAGAGAAGGCGGCAATCACCGTCGACGCACTCACCGCCGACCCTGAAAACATCTGGGCTGTTTCGGCATACGGCGGCTCTCAGTCTTCATGTGCGACTCCTCCGGCGATGCAGATCCACTCGATTGCCTCTGCTCTCTCCGAAACCAAAAGGAAAAACCCAAGGCTTTGTTTCACAGCAATGGAAAGGCTAAACTCGAAGCTGTACTTGCAGAATGTGTACATAATGAAAGAGAATGAGAGGCTGAGGAAGAAGGCACAGCTTCTGAACCAAGAGAATCAGGCCCTTCTTTCTGAGCTGAAGCAGAAGCTTTCAAAGCCAAACAAAGCCAATGGTGCTTCAAACACTGTGCCTGATCTGAATCTTAACCTGAGCTCCACCAACAACAACAACTCAAACAATCATCCTTCCAGTTCCAGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009888 GO:0009943 GO:0009955 GO:0009965 GO:0010016 GO:0010051 GO:0010073 GO:0010075 GO:0010305 GO:0010358 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048532 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0065007 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

20.77

Weight (kDa)

8.9

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014865)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000544 RLG00000020141 RLG00000023565 RLG00000034947 RLG00000035084
rosa_multiflora	Rmu_sc0003703.1_g000007
rosa_roxburghii	Rroxscaffold_1G00045110 Rroxscaffold_2G00147600 Rroxscaffold_6G00427800 Rroxscaffold_7G00170520
rosa_samantha	Rh1CG069500 Rh2AG247900 Rh3AG182100 Rh3CG205400 Rh5AG474400 Rh7BG245300
rosa_wichuraiana	Rw2G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	2 cut(s)	50, 121
AciI	CCGC	7 cut(s)	24, 48, 102, 128, 167, 192, 231
AclWI	GGATC	1 cut(s)	265
AcoI	YGGCCR	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	476
AfaI	GTAC	2 cut(s)	362, 377
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	3 cut(s)	157, 471, 498
AjiI	CACGTC	1 cut(s)	30
AluBI	AGCT	6 cut(s)	45, 358, 418, 454, 466, 531
AluI	AGCT	6 cut(s)	45, 358, 418, 454, 466, 531
Alw21I	GWGCWC	2 cut(s)	83, 533
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	265
AlwNI	CAGNNNCTG	2 cut(s)	421, 579
AoxI	GGCC	2 cut(s)	21, 438
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	439
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	4 cut(s)	28, 84, 166, 181
AsuII	TTCGAA	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	533
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	2 cut(s)	83, 533
BbvCI	CCTCAGC	1 cut(s)	401
BceAI	ACGGC	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	94
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	4 cut(s)	24, 102, 168, 232
BlsI	GCNGC	4 cut(s)	25, 103, 169, 233
Bme1390I	CCNGG	1 cut(s)	142
BmgBI	CACGTC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	439
BmrFI	CCNGG	1 cut(s)	142
BmsI	GCATC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	234
Bpu10I	CCTNAGC	2 cut(s)	401, 527
Bpu14I	TTCGAA	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	142
BsaBI	GATNNNNATC	2 cut(s)	269, 516
BsaJI	CCNNGG	2 cut(s)	141, 317
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	567
Bse3DI	GCAATG	1 cut(s)	342
Bse8I	GATNNNNATC	2 cut(s)	269, 516
BseDI	CCNNGG	2 cut(s)	141, 317
BseGI	GGATG	1 cut(s)	559
BseJI	GATNNNNATC	2 cut(s)	269, 516
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	5 cut(s)	81, 251, 392, 441, 518
BseNI	ACTGG	1 cut(s)	567
BseRI	GAGGAG	1 cut(s)	246
Bsh1236I	CGCG	2 cut(s)	50, 121
BshFI	GGCC	2 cut(s)	23, 440
BsiHKAI	GWGCWC	2 cut(s)	83, 533
BsiSI	CCGG	2 cut(s)	141, 260
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	16
BsnI	GGCC	2 cut(s)	23, 440
Bsp119I	TTCGAA	1 cut(s)	135
Bsp1286I	GDGCHC	2 cut(s)	83, 533
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	4 cut(s)	57, 70, 270, 511
BspACI	CCGC	7 cut(s)	24, 48, 102, 128, 167, 192, 231
BspANI	GGCC	2 cut(s)	23, 440
BspCNI	CTCAG	5 cut(s)	80, 250, 393, 442, 519
BspFNI	CGCG	2 cut(s)	50, 121
BspPI	GGATC	1 cut(s)	265
BspT104I	TTCGAA	1 cut(s)	135
BsrBI	CCGCTC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	342
BsrGI	TGTACA	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	567
BssECI	CCNNGG	2 cut(s)	141, 317
BssMI	GATC	4 cut(s)	57, 70, 270, 511
BssT1I	CCWWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	178, 505
BstAUI	TGTACA	1 cut(s)	375
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	5 cut(s)	67, 237, 401, 450, 527
BstF5I	GGATG	1 cut(s)	559
BstFNI	CGCG	2 cut(s)	50, 121
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	4 cut(s)	60, 73, 273, 514
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	4 cut(s)	57, 70, 270, 511
BstMWI	GCNNNNNNNGC	5 cut(s)	191, 221, 364, 472, 491
BstSCI	CCNGG	1 cut(s)	140
BstUI	CGCG	2 cut(s)	50, 121
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	2 cut(s)	70, 270
BstYI	RGATCY	2 cut(s)	70, 270
BsuRI	GGCC	2 cut(s)	23, 440
BtgZI	GCGATG	1 cut(s)	278
BtrI	CACGTC	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	501
Cac8I	GCNNGC	1 cut(s)	79
CaiI	CAGNNNCTG	2 cut(s)	421, 579
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	439
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	361, 376
CviAII	CATG	2 cut(s)	19, 246
CviQI	GTAC	2 cut(s)	361, 376
DdeI	CTNAG	5 cut(s)	67, 237, 401, 450, 527
DpnI	GATC	4 cut(s)	59, 72, 272, 513
DpnII	GATC	4 cut(s)	57, 70, 270, 511
EaeI	YGGCCR	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	531
Eco130I	CCWWGG	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	533
Eco53kI	GAGCTC	1 cut(s)	531
Eco57I	CTGAAG	1 cut(s)	476
EcoICRI	GAGCTC	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	439
EcoT14I	CCWWGG	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	533
ErhI	CCWWGG	1 cut(s)	317
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	2 cut(s)	22, 249
FaiI	YATR	4 cut(s)	20, 226, 247, 380
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	2 cut(s)	18, 245
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	4 cut(s)	24, 102, 168, 232
FokI	GGATG	1 cut(s)	546
FriOI	GRGCYC	1 cut(s)	533
Fsp4HI	GCNGC	4 cut(s)	24, 102, 168, 232
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	4 cut(s)	24, 102, 168, 232
HaeIII	GGCC	2 cut(s)	23, 440
HapII	CCGG	2 cut(s)	141, 260
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	22, 249
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	4 cut(s)	116, 253, 433, 517
HpaII	CCGG	2 cut(s)	141, 260
HphI	GGTGA	4 cut(s)	28, 84, 166, 181
Hpy166II	GTNNAC	2 cut(s)	181, 376
Hpy188I	TCNGA	5 cut(s)	70, 298, 423, 451, 516
Hpy8I	GTNNAC	2 cut(s)	181, 376
Hpy99I	CGWCG	3 cut(s)	89, 182, 185
HpyAV	CCTTC	4 cut(s)	157, 403, 452, 573
HpyCH4III	ACNGT	2 cut(s)	178, 505
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	3 cut(s)	4, 268, 367
HpyF10VI	GCNNNNNNNGC	5 cut(s)	191, 221, 364, 472, 491
HpyF3I	CTNAG	5 cut(s)	67, 237, 401, 450, 527
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	22, 249
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	4 cut(s)	57, 70, 270, 511
LmnI	GCTCC	4 cut(s)	50, 86, 109, 536
LpnPI	CCDG	8 cut(s)	59, 154, 196, 213, 273, 422, 522, 539
LweI	GCATC	1 cut(s)	255
MaeII	ACGT	1 cut(s)	29
MalI	GATC	4 cut(s)	59, 72, 272, 513
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	4 cut(s)	57, 70, 270, 511
MboII	GAAGA	3 cut(s)	52, 234, 418
MflI	RGATCY	2 cut(s)	70, 270
MhlI	GDGCHC	2 cut(s)	83, 533
MluCI	AATT	1 cut(s)	152
MlyI	GAGTC	2 cut(s)	125, 247
MnlI	CCTC	8 cut(s)	23, 44, 64, 107, 267, 295, 390, 396
MseI	TTAA	1 cut(s)	522
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	2 cut(s)	141, 260
MspR9I	CCNGG	1 cut(s)	142
MvnI	CGCG	2 cut(s)	50, 121
MwoI	GCNNNNNNNGC	5 cut(s)	191, 221, 364, 472, 491
NciI	CCSGG	1 cut(s)	142
NdeII	GATC	4 cut(s)	57, 70, 270, 511
NlaIII	CATG	2 cut(s)	22, 249
NspV	TTCGAA	1 cut(s)	135
PfeI	GAWTC	2 cut(s)	433, 517
PkrI	GCNGC	4 cut(s)	25, 103, 169, 233
PleI	GAGTC	2 cut(s)	124, 247
PpsI	GAGTC	2 cut(s)	124, 247
Psp124BI	GAGCTC	1 cut(s)	533
PspPI	GGNCC	1 cut(s)	439
PstNI	CAGNNNCTG	2 cut(s)	421, 579
PsuI	RGATCY	2 cut(s)	70, 270
RsaI	GTAC	2 cut(s)	362, 377
RsaNI	GTAC	2 cut(s)	361, 376
RseI	CAYNNNNRTG	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	533
SalI	GTCGAC	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	4 cut(s)	24, 102, 168, 232
Sau3AI	GATC	4 cut(s)	57, 70, 270, 511
Sau96I	GGNCC	1 cut(s)	439
SchI	GAGTC	2 cut(s)	125, 247
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	2 cut(s)	83, 533
SfaNI	GCATC	1 cut(s)	255
SfuI	TTCGAA	1 cut(s)	135
SgrDI	CGTCGACG	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	7 cut(s)	24, 48, 102, 128, 167, 192, 231
SstI	GAGCTC	1 cut(s)	533
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	178, 505
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	6 cut(s)	15, 56, 135, 180, 278, 353
TasI	AATT	1 cut(s)	152
TatI	WGTACW	2 cut(s)	360, 375
TauI	GCSGC	4 cut(s)	26, 104, 170, 234
TfiI	GAWTC	2 cut(s)	433, 517
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	1 cut(s)	508
TspDTI	ATGAA	2 cut(s)	234, 398
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	508
XmiI	GTMKAC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.