Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0014865

Physical Location & Seq

Genomic Coordinates Forward (+)

27885229 .. 27892542

Gene Structure 7314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG247900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCAGAACAACCTCGACATGGCCGCCGCGTCCCTCACCAACAGCTCCGCGACCTCGATCTGCTGCTCAGATCTGGCGTGCTCCTTCGTCTCACCCCTCGCCGCTCCAAACATTGAGTCGCGCAAGGCGGTGTTCGAATCCGGGGCTACCAAATTGAAAGAGAAGGCAGCAATCACTGTCGAGGCCCTCACCGCCGACCCTGAAAACATCGAGGCTGTTTCGGCATACGGCGGCGTCTCAGTCGATGCAGATCCACTCAGTCGGCGCCTCCTCCATTTGCCGCCTCTTTATGGAAATATGATGTCGTGCCGGAGATTCTTGCTCTCTGTCATTGTTTTAGAATTCAACTTACTCAACTACAGGTCTGAATCTTGCACCAGCTACAACTCTAACTACAAATACTACACTCAGACAACGACCTCAGTGAAGCCAGCCCAGGTGAACTTTGCAAGTGCATTCTCAACATCAGCTACTGAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

160

Amino Acids

17.27

Weight (kDa)

5.64

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014865)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000544 RLG00000020141 RLG00000023565 RLG00000034947 RLG00000035084
rosa_multiflora	Rmu_sc0003703.1_g000007
rosa_roxburghii	Rroxscaffold_1G00045110 Rroxscaffold_2G00147600 Rroxscaffold_6G00427800 Rroxscaffold_7G00170520
rosa_samantha	Rh1CG069500 Rh2AG247900 Rh3AG182100 Rh3CG205400 Rh5AG474400 Rh7BG245300
rosa_wichuraiana	Rw2G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	264
AccBSI	CCGCTC	1 cut(s)	104
AccII	CGCG	3 cut(s)	29, 50, 121
AciI	CCGC	8 cut(s)	24, 27, 48, 102, 128, 192, 231, 281
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	341
AcyI	GRCGYC	2 cut(s)	234, 265
AfiI	CCNNNNNNNGG	2 cut(s)	19, 290
AgsI	TTSAA	2 cut(s)	157, 346
AjnI	CCWGG	1 cut(s)	435
AluBI	AGCT	3 cut(s)	45, 381, 470
AluI	AGCT	3 cut(s)	45, 381, 470
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	2 cut(s)	94, 241
AlwI	GGATC	1 cut(s)	245
AlwNI	CAGNNNCTG	1 cut(s)	473
AoxI	GGCC	2 cut(s)	21, 183
ApeKI	GCWGC	2 cut(s)	63, 167
ApoI	RAATTY	1 cut(s)	341
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AspLEI	GCGC	2 cut(s)	123, 267
AspS9I	GGNCC	1 cut(s)	184
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	4 cut(s)	28, 84, 181, 451
AsuII	TTCGAA	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	2 cut(s)	50, 179
BceAI	ACGGC	1 cut(s)	244
BciT130I	CCWGG	1 cut(s)	437
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	2 cut(s)	94, 241
BfmI	CTRYAG	1 cut(s)	358
BfoI	RGCGCY	1 cut(s)	268
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	7 cut(s)	24, 27, 64, 102, 168, 232, 281
BlsI	GCNGC	7 cut(s)	25, 28, 65, 103, 169, 233, 282
Bme1390I	CCNGG	2 cut(s)	142, 437
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	2 cut(s)	142, 437
BmsI	GCATC	1 cut(s)	235
Bpu14I	TTCGAA	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	142
BsaBI	GATNNNNATC	1 cut(s)	249
BsaHI	GRCGYC	2 cut(s)	234, 265
BsaJI	CCNNGG	2 cut(s)	141, 435
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 290
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	437
BseDI	CCNNGG	2 cut(s)	141, 435
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	2 cut(s)	19, 290
BseMII	CTCAG	6 cut(s)	81, 252, 271, 422, 435, 465
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	2 cut(s)	50, 179
Bsh1236I	CGCG	3 cut(s)	29, 50, 121
BshFI	GGCC	2 cut(s)	23, 185
BshNI	GGYRCC	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	141, 310
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	19, 290
BsmAI	GTCTC	2 cut(s)	94, 241
BsmBI	CGTCTC	2 cut(s)	94, 241
BsmFI	GGGAC	1 cut(s)	16
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	2 cut(s)	23, 185
Bsp119I	TTCGAA	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	57, 70, 250
BspACI	CCGC	8 cut(s)	24, 27, 48, 102, 128, 192, 231, 281
BspANI	GGCC	2 cut(s)	23, 185
BspCNI	CTCAG	6 cut(s)	80, 251, 270, 421, 434, 466
BspFNI	CGCG	3 cut(s)	29, 50, 121
BspLI	GGNNCC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	245
BspT104I	TTCGAA	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	264
BsrBI	CCGCTC	1 cut(s)	104
BssECI	CCNNGG	2 cut(s)	141, 435
BssMI	GATC	3 cut(s)	57, 70, 250
BssNI	GRCGYC	2 cut(s)	234, 265
Bst2UI	CCWGG	1 cut(s)	437
Bst4CI	ACNGT	1 cut(s)	178
BstACI	GRCGYC	2 cut(s)	234, 265
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	79, 432
BstDEI	CTNAG	6 cut(s)	67, 238, 257, 408, 421, 474
BstFNI	CGCG	3 cut(s)	29, 50, 121
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	2 cut(s)	123, 267
BstKTI	GATC	3 cut(s)	60, 73, 253
BstMAI	GTCTC	2 cut(s)	94, 241
BstMBI	GATC	3 cut(s)	57, 70, 250
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 221
BstNI	CCWGG	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	140, 435
BstSFI	CTRYAG	1 cut(s)	358
BstUI	CGCG	3 cut(s)	29, 50, 121
BstV1I	GCAGC	2 cut(s)	50, 179
BstX2I	RGATCY	2 cut(s)	70, 250
BstYI	RGATCY	2 cut(s)	70, 250
BsuRI	GGCC	2 cut(s)	23, 185
BtsIMutI	CAGTG	2 cut(s)	174, 429
Cac8I	GCNNGC	2 cut(s)	79, 432
CaiI	CAGNNNCTG	1 cut(s)	473
CfoI	GCGC	2 cut(s)	123, 267
Cfr13I	GGNCC	1 cut(s)	184
CseI	GACGC	2 cut(s)	18, 223
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	9 cut(s)	23, 45, 146, 185, 215, 381, 430, 434, 470
CviKI_1	RGCY	9 cut(s)	23, 45, 146, 185, 215, 381, 430, 434, 470
DdeI	CTNAG	6 cut(s)	67, 238, 257, 408, 421, 474
DinI	GGCGCC	1 cut(s)	266
DpnI	GATC	3 cut(s)	59, 72, 252
DpnII	GATC	3 cut(s)	57, 70, 250
EaeI	YGGCCR	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	435
EgeI	GGCGCC	1 cut(s)	266
EheI	GGCGCC	1 cut(s)	266
Esp3I	CGTCTC	2 cut(s)	94, 241
FaeI	CATG	1 cut(s)	22
FaiI	YATR	4 cut(s)	20, 226, 291, 299
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	7 cut(s)	24, 27, 64, 102, 168, 232, 281
Fsp4HI	GCNGC	7 cut(s)	24, 27, 64, 102, 168, 232, 281
GlaI	GCGC	2 cut(s)	122, 266
GluI	GCNGC	7 cut(s)	24, 27, 64, 102, 168, 232, 281
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	2 cut(s)	23, 185
HapII	CCGG	2 cut(s)	141, 310
HgaI	GACGC	2 cut(s)	18, 223
HhaI	GCGC	2 cut(s)	123, 267
Hin1I	GRCGYC	2 cut(s)	234, 265
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	2 cut(s)	121, 265
HinP1I	GCGC	2 cut(s)	121, 265
HinfI	GANTC	4 cut(s)	116, 137, 315, 368
HpaII	CCGG	2 cut(s)	141, 310
HphI	GGTGA	4 cut(s)	28, 84, 181, 451
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	3 cut(s)	70, 367, 411
Hpy8I	GTNNAC	1 cut(s)	442
HpyAV	CCTTC	2 cut(s)	94, 157
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	5 cut(s)	4, 248, 375, 449, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 221
HpyF3I	CTNAG	6 cut(s)	67, 238, 257, 408, 421, 474
Hsp92I	GRCGYC	2 cut(s)	234, 265
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	2 cut(s)	121, 265
KasI	GGCGCC	1 cut(s)	264
Kzo9I	GATC	3 cut(s)	57, 70, 250
LmnI	GCTCC	3 cut(s)	50, 86, 109
LpnPI	CCDG	9 cut(s)	59, 154, 213, 323, 346, 391, 422, 444, 449
Lsp1109I	GCAGC	2 cut(s)	50, 179
LweI	GCATC	1 cut(s)	235
MalI	GATC	3 cut(s)	59, 72, 252
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	3 cut(s)	57, 70, 250
MflI	RGATCY	2 cut(s)	70, 250
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	2 cut(s)	152, 341
Mly113I	GGCGCC	1 cut(s)	265
MlyI	GAGTC	1 cut(s)	125
MseI	TTAA	1 cut(s)	481
MspI	CCGG	2 cut(s)	141, 310
MspR9I	CCNGG	2 cut(s)	142, 437
Mva1269I	GAATGC	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	437
MvnI	CGCG	3 cut(s)	29, 50, 121
MwoI	GCNNNNNNNGC	2 cut(s)	191, 221
NarI	GGCGCC	1 cut(s)	265
NciI	CCSGG	1 cut(s)	142
NdeII	GATC	3 cut(s)	57, 70, 250
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	266
NspV	TTCGAA	1 cut(s)	135
PctI	GAATGC	1 cut(s)	455
PfeI	GAWTC	3 cut(s)	137, 315, 368
PkrI	GCNGC	7 cut(s)	25, 28, 65, 103, 169, 233, 282
PleI	GAGTC	1 cut(s)	124
PluTI	GGCGCC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	435
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	2 cut(s)	70, 250
SaqAI	TTAA	1 cut(s)	481
SatI	GCNGC	7 cut(s)	24, 27, 64, 102, 168, 232, 281
Sau3AI	GATC	3 cut(s)	57, 70, 250
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	142, 437
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	8 cut(s)	15, 47, 56, 365, 383, 422, 441, 472
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	358
SfoI	GGCGCC	1 cut(s)	266
SfuI	TTCGAA	1 cut(s)	135
Sse9I	AATT	2 cut(s)	152, 341
SsiI	CCGC	8 cut(s)	24, 27, 48, 102, 128, 192, 231, 281
SspDI	GGCGCC	1 cut(s)	264
StyD4I	CCNGG	2 cut(s)	140, 435
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	6 cut(s)	15, 56, 135, 180, 210, 243
TasI	AATT	2 cut(s)	152, 341
TauI	GCSGC	5 cut(s)	26, 29, 104, 234, 283
TfiI	GAWTC	3 cut(s)	137, 315, 368
Tru1I	TTAA	1 cut(s)	481
Tru9I	TTAA	1 cut(s)	481
TscAI	CASTG	2 cut(s)	181, 429
TseI	GCWGC	2 cut(s)	63, 167
TspRI	CASTG	2 cut(s)	181, 429
XapI	RAATTY	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.