Rh7BG245300

Armadillo/beta-catenin-like repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014865
Physical Location & Seq
Forward (+)
21850176 .. 21850496
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG245300.1

Sequence Viewer

Length: 321 bp
ATGGCCGCTGCGTCCCTCACCAACCAGCTCCGCGACCTTGACCTGCTGCTCAGATCTGGCGTGCTCCACCAGTCAAACCCCACCTCCGCCGTCTCGCCCCTCACCGCCGCAAACGATGAGTCACGCAAGGCGGTGTTCGAATCCGGGGCTACCACATTGAAAGAGAAGGCGACAATCATAGTCGAGGCCCTCACCGCCGACCCGGAAAACACCTGGGCTGTTTCGGTCTTCACCGGCGCCTCCTCCGTCGATGCAGAACCACTGCCTCGCCAATCGTCGTCAATTCTTCGTCCAACAGGGATGGTGGTTGTTGTCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

106

Amino Acids

11.13

Weight (kDa)

5.19

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 51
AccB1I GGYRCC 1 cut(s) 236
AccII CGCG 1 cut(s) 33
AciI CCGC 7 cut(s) 6, 31, 87, 105, 108, 131, 195
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 237
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 1 cut(s) 212
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 97
AoxI GGCC 2 cut(s) 3, 186
ApeKI GCWGC 2 cut(s) 8, 46
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 2 cut(s) 145, 203
AsuHPI GGTGA 4 cut(s) 10, 94, 184, 223
AsuII TTCGAA 1 cut(s) 138
BanI GGYRCC 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 33
BccI CCATC 1 cut(s) 295
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 214
BcnI CCSGG 2 cut(s) 145, 203
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 1 cut(s) 319
BfoI RGCGCY 1 cut(s) 240
BfuAI ACCTGC 1 cut(s) 51
BglII AGATCT 1 cut(s) 53
BisI GCNGC 4 cut(s) 6, 9, 47, 108
BlsI GCNGC 4 cut(s) 7, 10, 48, 109
Bme1390I CCNGG 3 cut(s) 145, 203, 214
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 3 cut(s) 145, 203, 214
BmsI GCATC 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 220
Bpu14I TTCGAA 1 cut(s) 138
BpuMI CCSGG 2 cut(s) 145, 203
BsaHI GRCGYC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 144, 213
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 214
BseDI CCNNGG 2 cut(s) 144, 213
BseGI GGATG 1 cut(s) 306
BseMII CTCAG 1 cut(s) 64
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 232
BseXI GCAGC 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 33
BshFI GGCC 2 cut(s) 5, 188
BshNI GGYRCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 3 cut(s) 144, 203, 234
BsmAI GTCTC 1 cut(s) 97
BsmBI CGTCTC 1 cut(s) 97
BsnI GGCC 2 cut(s) 5, 188
Bsp119I TTCGAA 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 1 cut(s) 53
BspACI CCGC 7 cut(s) 6, 31, 87, 105, 108, 131, 195
BspANI GGCC 2 cut(s) 5, 188
BspCNI CTCAG 1 cut(s) 63
BspFNI CGCG 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 238
BspMI ACCTGC 1 cut(s) 51
BspT104I TTCGAA 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 2 cut(s) 144, 213
BssMI GATC 1 cut(s) 53
BssNI GRCGYC 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 214
BstACI GRCGYC 1 cut(s) 237
BstBI TTCGAA 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 306
BstFNI CGCG 1 cut(s) 33
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 1 cut(s) 56
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 1 cut(s) 214
BstSCI CCNGG 3 cut(s) 143, 201, 212
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 33
BstV2I GAAGAC 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BsuRI GGCC 2 cut(s) 5, 188
BtsCI GGATG 1 cut(s) 306
BtsI GCAGTG 1 cut(s) 260
BtsIMutI CAGTG 1 cut(s) 260
BveI ACCTGC 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 62
CfoI GCGC 1 cut(s) 239
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 187
CviJI RGCY 5 cut(s) 5, 28, 149, 188, 218
CviKI_1 RGCY 5 cut(s) 5, 28, 149, 188, 218
DdeI CTNAG 1 cut(s) 50
DinI GGCGCC 1 cut(s) 238
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 212
EgeI GGCGCC 1 cut(s) 238
EheI GGCGCC 1 cut(s) 238
Esp3I CGTCTC 1 cut(s) 97
FaiI YATR 1 cut(s) 179
Fnu4HI GCNGC 4 cut(s) 6, 9, 47, 108
FokI GGATG 1 cut(s) 313
Fsp4HI GCNGC 4 cut(s) 6, 9, 47, 108
FspBI CTAG 1 cut(s) 319
GlaI GCGC 1 cut(s) 238
GluI GCNGC 4 cut(s) 6, 9, 47, 108
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 2 cut(s) 5, 188
HapII CCGG 3 cut(s) 144, 203, 234
HhaI GCGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 237
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HinfI GANTC 2 cut(s) 119, 140
HpaII CCGG 3 cut(s) 144, 203, 234
HphI GGTGA 4 cut(s) 10, 94, 184, 223
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 53
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 2 cut(s) 251, 280
HpyAV CCTTC 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 50
Hsp92I GRCGYC 1 cut(s) 237
HspAI GCGC 1 cut(s) 237
KasI GGCGCC 1 cut(s) 236
Kzo9I GATC 1 cut(s) 53
LmnI GCTCC 2 cut(s) 33, 69
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 1 cut(s) 241
MaeI CTAG 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 120
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MboII GAAGA 2 cut(s) 220, 278
MflI RGATCY 1 cut(s) 53
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 1 cut(s) 282
Mly113I GGCGCC 1 cut(s) 237
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 317
MnlI CCTC 8 cut(s) 26, 94, 110, 178, 200, 250, 253, 276
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 3 cut(s) 144, 203, 234
MspR9I CCNGG 3 cut(s) 145, 203, 214
MvaI CCWGG 1 cut(s) 214
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 194
NarI GGCGCC 1 cut(s) 237
NciI CCSGG 2 cut(s) 145, 203
NdeII GATC 1 cut(s) 53
NlaIV GGNNCC 1 cut(s) 238
NmuCI GTSAC 1 cut(s) 120
NspV TTCGAA 1 cut(s) 138
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 4 cut(s) 7, 10, 48, 109
PleI GAGTC 1 cut(s) 127
PluTI GGCGCC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 127
Psp6I CCWGG 1 cut(s) 212
PspGI CCWGG 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 187
PsuI RGATCY 1 cut(s) 53
SatI GCNGC 4 cut(s) 6, 9, 47, 108
Sau3AI GATC 1 cut(s) 53
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 3 cut(s) 145, 203, 214
SduI GDGCHC 1 cut(s) 66
SetI ASST 5 cut(s) 30, 39, 45, 86, 215
SfaNI GCATC 1 cut(s) 241
SfoI GGCGCC 1 cut(s) 238
SfuI TTCGAA 1 cut(s) 138
SgrAI CRCCGGYG 1 cut(s) 233
Sse9I AATT 1 cut(s) 282
SsiI CCGC 7 cut(s) 6, 31, 87, 105, 108, 131, 195
SspDI GGCGCC 1 cut(s) 236
SspMI CTAG 1 cut(s) 319
StyD4I CCNGG 3 cut(s) 143, 201, 212
TaqI TCGA 3 cut(s) 138, 183, 249
TaqII GACCGA 1 cut(s) 214
TasI AATT 1 cut(s) 282
TauI GCSGC 2 cut(s) 8, 110
TfiI GAWTC 1 cut(s) 140
TscAI CASTG 1 cut(s) 267
TseFI GTSAC 1 cut(s) 120
TseI GCWGC 2 cut(s) 8, 46
Tsp45I GTSAC 1 cut(s) 120
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 1 cut(s) 267
XspI CTAG 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.