Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0014865

Physical Location & Seq

Genomic Coordinates Reverse (-)

81411629 .. 81411970

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG474400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCAGAACGACCTCGACATGGCCGCCGCGTCCCTCACCAACCAGCTCCGCGACCTCAACATGCTGCTCAGATCTGGCGTGCTCCACCAGTCAAATGCCACCTCCGTCGTCTTGCCCCTCGCCACCGCAAACAATGAGTCGCACAAGGTGGTGTTCGAATCCGCGGCTACCAAATTGAAAGAGAAGGTGGCAATCGCCATCGAGGCCCTCACTGCCGACCCTGAAAACACTTGGGCTGTTTCGGCATATGGTGGCGTTTTGATCTTCATCGGAGCCTCCTTCGGCGATGTAGATCCACTCGGTCAGCGCCTCCTCCATTTGCCGCTGCTTTTGGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

113

Amino Acids

12.08

Weight (kDa)

4.93

Isoelectric Point (pI)

26.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014865)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000544 RLG00000020141 RLG00000023565 RLG00000034947 RLG00000035084
rosa_multiflora	Rmu_sc0003703.1_g000007
rosa_roxburghii	Rroxscaffold_1G00045110 Rroxscaffold_2G00147600 Rroxscaffold_6G00427800 Rroxscaffold_7G00170520
rosa_samantha	Rh1CG069500 Rh2AG247900 Rh3AG182100 Rh3CG205400 Rh5AG474400 Rh7BG245300
rosa_wichuraiana	Rw2G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	29, 51, 164
AciI	CCGC	7 cut(s)	24, 27, 49, 126, 162, 164, 323
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	21
AdeI	CACNNNGTG	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	1 cut(s)	178
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw21I	GWGCWC	1 cut(s)	84
AlwI	GGATC	1 cut(s)	287
AoxI	GGCC	2 cut(s)	21, 204
ApeKI	GCWGC	2 cut(s)	64, 325
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	28
AsuII	TTCGAA	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	51, 312
BccI	CCATC	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	310
BglI	GCCNNNNNGGC	1 cut(s)	203
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	6 cut(s)	24, 27, 65, 165, 323, 326
BlsI	GCNGC	6 cut(s)	25, 28, 66, 166, 324, 327
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	274
Bpu14I	TTCGAA	1 cut(s)	156
BsaBI	GATNNNNATC	2 cut(s)	266, 291
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	88
Bse8I	GATNNNNATC	2 cut(s)	266, 291
BseDI	CCNNGG	1 cut(s)	162
BseJI	GATNNNNATC	2 cut(s)	266, 291
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	2 cut(s)	51, 312
Bsh1236I	CGCG	3 cut(s)	29, 51, 164
BshFI	GGCC	2 cut(s)	23, 206
BsiHKAI	GWGCWC	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	16
BsnI	GGCC	2 cut(s)	23, 206
Bsp119I	TTCGAA	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	71, 261, 292
BspACI	CCGC	7 cut(s)	24, 27, 49, 126, 162, 164, 323
BspANI	GGCC	2 cut(s)	23, 206
BspCNI	CTCAG	1 cut(s)	81
BspFNI	CGCG	3 cut(s)	29, 51, 164
BspLI	GGNNCC	1 cut(s)	274
BspPI	GGATC	1 cut(s)	287
BspT104I	TTCGAA	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	3 cut(s)	71, 261, 292
BstBI	TTCGAA	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	162
BstFNI	CGCG	3 cut(s)	29, 51, 164
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	3 cut(s)	74, 264, 295
BstMBI	GATC	3 cut(s)	71, 261, 292
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 212, 242
BstNSI	RCATGY	1 cut(s)	64
BstUI	CGCG	3 cut(s)	29, 51, 164
BstV1I	GCAGC	2 cut(s)	51, 312
BstX2I	RGATCY	2 cut(s)	71, 292
BstYI	RGATCY	2 cut(s)	71, 292
BsuRI	GGCC	2 cut(s)	23, 206
BtgI	CCRYGG	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	300
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	80
CfoI	GCGC	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	205
Cfr42I	CCGCGG	1 cut(s)	165
CseI	GACGC	1 cut(s)	18
CviAII	CATG	2 cut(s)	19, 61
CviJI	RGCY	6 cut(s)	23, 46, 167, 206, 236, 275
CviKI_1	RGCY	6 cut(s)	23, 46, 167, 206, 236, 275
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	3 cut(s)	73, 263, 294
DpnII	GATC	3 cut(s)	71, 261, 292
DraIII	CACNNNGTG	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	205
FaeI	CATG	2 cut(s)	22, 64
FaiI	YATR	5 cut(s)	20, 62, 247, 249, 340
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	2 cut(s)	18, 60
FauNDI	CATATG	1 cut(s)	247
Fnu4HI	GCNGC	6 cut(s)	24, 27, 65, 165, 323, 326
Fsp4HI	GCNGC	6 cut(s)	24, 27, 65, 165, 323, 326
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	6 cut(s)	24, 27, 65, 165, 323, 326
HaeII	RGCGCY	1 cut(s)	310
HaeIII	GGCC	2 cut(s)	23, 206
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	2 cut(s)	22, 64
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HinfI	GANTC	2 cut(s)	137, 158
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	71, 272
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	178, 289
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 212, 242
HpyF3I	CTNAG	1 cut(s)	68
Hsp92II	CATG	2 cut(s)	22, 64
HspAI	GCGC	1 cut(s)	307
KspI	CCGCGG	1 cut(s)	165
Kzo9I	GATC	3 cut(s)	71, 261, 292
LmnI	GCTCC	3 cut(s)	51, 87, 272
LpnPI	CCDG	4 cut(s)	56, 60, 101, 234
Lsp1109I	GCAGC	2 cut(s)	51, 312
MalI	GATC	3 cut(s)	73, 263, 294
MboI	GATC	3 cut(s)	71, 261, 292
MboII	GAAGA	1 cut(s)	256
MflI	RGATCY	2 cut(s)	71, 292
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	146
MspA1I	CMGCKG	2 cut(s)	164, 325
MvnI	CGCG	3 cut(s)	29, 51, 164
MwoI	GCNNNNNNNGC	3 cut(s)	203, 212, 242
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	3 cut(s)	71, 261, 292
NlaIII	CATG	2 cut(s)	22, 64
NlaIV	GGNNCC	1 cut(s)	274
NspI	RCATGY	1 cut(s)	64
NspV	TTCGAA	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	6 cut(s)	25, 28, 66, 166, 324, 327
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	205
PsuI	RGATCY	2 cut(s)	71, 292
SacII	CCGCGG	1 cut(s)	165
SatI	GCNGC	6 cut(s)	24, 27, 65, 165, 323, 326
Sau3AI	GATC	3 cut(s)	71, 261, 292
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	6 cut(s)	15, 48, 57, 104, 150, 189
Sfr303I	CCGCGG	1 cut(s)	165
SfuI	TTCGAA	1 cut(s)	156
SgrBI	CCGCGG	1 cut(s)	165
Sse9I	AATT	1 cut(s)	173
SsiI	CCGC	7 cut(s)	24, 27, 49, 126, 162, 164, 323
TaqI	TCGA	3 cut(s)	15, 156, 201
TaqII	GACCGA	1 cut(s)	290
TasI	AATT	1 cut(s)	173
TauI	GCSGC	4 cut(s)	26, 29, 167, 325
TfiI	GAWTC	1 cut(s)	158
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	2 cut(s)	64, 325
TspDTI	ATGAA	1 cut(s)	256
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	217
XceI	RCATGY	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.