Rw2G046200

Armadillo/beta-catenin-like repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0014865
Physical Location & Seq
Reverse (-)
73503983 .. 73505269
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G046200.1

Sequence Viewer

Length: 360 bp
ATGCTCTATATGCAGAACGACCTCGACATGGCAGCCGCGTCCCTCACCAACAGCTCCGCGACCTCGATCTGCTGCTCAGATCTGGCATGCTCCGTTGTCTCACCCCTCGCTGCTCCAAACATTGAGTCGCGCAAGGCGGTGTTCGAAGCCGGGGCTACCAAATTGAAAGAGAAGGCGGCAATCACCGTCGACGCACTCACCACCGACCCTGAAAACATCTGGGCTGTTTCGGCATACGGCGGCGTCTCAGTCTTCATGACCGTTGAAGACGTCGAAGCCAACGAACCACGGAACCAGGTGCCGGTGAGGTTGGTGACGGTGAACGAGTCGACGATCTTGGGGAGGACGACGAGCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

119

Amino Acids

12.59

Weight (kDa)

4.55

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 298
AccI GTMKAC 2 cut(s) 189, 329
AccII CGCG 3 cut(s) 38, 59, 130
AciI CCGC 5 cut(s) 36, 57, 137, 176, 240
AcyI GRCGYC 2 cut(s) 243, 270
AfiI CCNNNNNNNGG 2 cut(s) 28, 301
AgsI TTSAA 2 cut(s) 166, 266
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 1 cut(s) 54
AluI AGCT 1 cut(s) 54
Alw26I GTCTC 2 cut(s) 103, 250
ApeKI GCWGC 3 cut(s) 32, 72, 110
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
AspLEI GCGC 1 cut(s) 132
AsuC2I CCSGG 1 cut(s) 151
AsuHPI GGTGA 7 cut(s) 37, 93, 175, 190, 316, 325, 331
AsuII TTCGAA 1 cut(s) 144
BanI GGYRCC 1 cut(s) 298
BbsI GAAGAC 2 cut(s) 244, 273
BbvI GCAGC 3 cut(s) 44, 59, 97
BceAI ACGGC 1 cut(s) 253
BciT130I CCWGG 1 cut(s) 296
BcnI CCSGG 1 cut(s) 151
BcoDI GTCTC 2 cut(s) 103, 250
BglII AGATCT 1 cut(s) 79
BisI GCNGC 6 cut(s) 33, 36, 73, 111, 177, 241
BlsI GCNGC 6 cut(s) 34, 37, 74, 112, 178, 242
Bme1390I CCNGG 2 cut(s) 151, 296
BmiI GGNNCC 2 cut(s) 293, 300
BmrFI CCNGG 2 cut(s) 151, 296
BpiI GAAGAC 2 cut(s) 244, 273
Bpu14I TTCGAA 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 151
BsaHI GRCGYC 2 cut(s) 243, 270
BsaJI CCNNGG 2 cut(s) 150, 287
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 301
Bse118I RCCGGY 1 cut(s) 301
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 150, 287
BseLI CCNNNNNNNGG 2 cut(s) 28, 301
BseMII CTCAG 2 cut(s) 90, 261
BseXI GCAGC 3 cut(s) 44, 59, 97
Bsh1236I CGCG 3 cut(s) 38, 59, 130
BshNI GGYRCC 1 cut(s) 298
BsiSI CCGG 2 cut(s) 150, 302
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 28, 301
BsmAI GTCTC 2 cut(s) 103, 250
BsmBI CGTCTC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 25
Bsp119I TTCGAA 1 cut(s) 144
Bsp143I GATC 3 cut(s) 66, 79, 333
BspACI CCGC 5 cut(s) 36, 57, 137, 176, 240
BspCNI CTCAG 2 cut(s) 89, 260
BspFNI CGCG 3 cut(s) 38, 59, 130
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 293, 300
BspT104I TTCGAA 1 cut(s) 144
BspT107I GGYRCC 1 cut(s) 298
BsrFI RCCGGY 1 cut(s) 301
BssAI RCCGGY 1 cut(s) 301
BssECI CCNNGG 2 cut(s) 150, 287
BssMI GATC 3 cut(s) 66, 79, 333
BssNI GRCGYC 2 cut(s) 243, 270
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 3 cut(s) 187, 262, 319
BstACI GRCGYC 2 cut(s) 243, 270
BstBI TTCGAA 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 2 cut(s) 76, 247
BstDSI CCRYGG 1 cut(s) 287
BstFNI CGCG 3 cut(s) 38, 59, 130
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 3 cut(s) 69, 82, 336
BstMAI GTCTC 2 cut(s) 103, 250
BstMBI GATC 3 cut(s) 66, 79, 333
BstMWI GCNNNNNNNGC 2 cut(s) 10, 230
BstNI CCWGG 1 cut(s) 296
BstNSI RCATGY 1 cut(s) 90
BstSCI CCNGG 2 cut(s) 149, 294
BstUI CGCG 3 cut(s) 38, 59, 130
BstV1I GCAGC 3 cut(s) 44, 59, 97
BstV2I GAAGAC 2 cut(s) 244, 273
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BtgI CCRYGG 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 88
CciI TCATGA 1 cut(s) 255
CfoI GCGC 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 301
CseI GACGC 3 cut(s) 27, 200, 232
CsiI ACCWGGT 1 cut(s) 294
CviAII CATG 3 cut(s) 28, 87, 256
CviJI RGCY 7 cut(s) 35, 54, 149, 155, 224, 278, 354
CviKI_1 RGCY 7 cut(s) 35, 54, 149, 155, 224, 278, 354
DdeI CTNAG 2 cut(s) 76, 247
DpnI GATC 3 cut(s) 68, 81, 335
DpnII GATC 3 cut(s) 66, 79, 333
EcoRII CCWGG 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 250
FaeI CATG 3 cut(s) 31, 90, 259
FaiI YATR 6 cut(s) 9, 11, 29, 88, 235, 257
FaqI GGGAC 1 cut(s) 25
FatI CATG 3 cut(s) 27, 86, 255
FblI GTMKAC 2 cut(s) 189, 329
Fnu4HI GCNGC 6 cut(s) 33, 36, 73, 111, 177, 241
Fsp4HI GCNGC 6 cut(s) 33, 36, 73, 111, 177, 241
GlaI GCGC 1 cut(s) 131
GluI GCNGC 6 cut(s) 33, 36, 73, 111, 177, 241
HapII CCGG 2 cut(s) 150, 302
HgaI GACGC 3 cut(s) 27, 200, 232
HhaI GCGC 1 cut(s) 132
Hin1I GRCGYC 2 cut(s) 243, 270
Hin1II CATG 3 cut(s) 31, 90, 259
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HincII GTYRAC 2 cut(s) 190, 330
HindII GTYRAC 2 cut(s) 190, 330
HinfI GANTC 2 cut(s) 125, 326
HpaII CCGG 2 cut(s) 150, 302
HphI GGTGA 7 cut(s) 37, 93, 175, 190, 316, 325, 331
Hpy166II GTNNAC 3 cut(s) 190, 322, 330
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 3 cut(s) 190, 322, 330
Hpy99I CGWCG 5 cut(s) 191, 194, 275, 334, 352
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 3 cut(s) 187, 262, 319
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 230
HpyF3I CTNAG 2 cut(s) 76, 247
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 2 cut(s) 243, 270
Hsp92II CATG 3 cut(s) 31, 90, 259
HspAI GCGC 1 cut(s) 130
Kzo9I GATC 3 cut(s) 66, 79, 333
LmnI GCTCC 3 cut(s) 59, 95, 118
LpnPI CCDG 7 cut(s) 68, 163, 205, 222, 281, 308, 315
Lsp1109I GCAGC 3 cut(s) 44, 59, 97
MabI ACCWGGT 1 cut(s) 294
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 313
MalI GATC 3 cut(s) 68, 81, 335
MboI GATC 3 cut(s) 66, 79, 333
MboII GAAGA 2 cut(s) 244, 278
MflI RGATCY 1 cut(s) 79
MluCI AATT 1 cut(s) 161
MlyI GAGTC 2 cut(s) 134, 335
MnlI CCTC 6 cut(s) 32, 53, 73, 116, 300, 336
MspI CCGG 2 cut(s) 150, 302
MspR9I CCNGG 2 cut(s) 151, 296
MvaI CCWGG 1 cut(s) 296
MvnI CGCG 3 cut(s) 38, 59, 130
MwoI GCNNNNNNNGC 2 cut(s) 10, 230
NciI CCSGG 1 cut(s) 151
NdeII GATC 3 cut(s) 66, 79, 333
NlaIII CATG 3 cut(s) 31, 90, 259
NlaIV GGNNCC 2 cut(s) 293, 300
NmuCI GTSAC 1 cut(s) 313
NspI RCATGY 1 cut(s) 90
NspV TTCGAA 1 cut(s) 144
PaeI GCATGC 1 cut(s) 90
PagI TCATGA 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PkrI GCNGC 6 cut(s) 34, 37, 74, 112, 178, 242
PleI GAGTC 2 cut(s) 133, 334
PpsI GAGTC 2 cut(s) 133, 334
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 293, 300
PsuI RGATCY 1 cut(s) 79
SalI GTCGAC 2 cut(s) 188, 328
SatI GCNGC 6 cut(s) 33, 36, 73, 111, 177, 241
Sau3AI GATC 3 cut(s) 66, 79, 333
SchI GAGTC 2 cut(s) 134, 335
ScrFI CCNGG 2 cut(s) 151, 296
SetI ASST 6 cut(s) 24, 56, 65, 273, 300, 311
SexAI ACCWGGT 1 cut(s) 294
SfuI TTCGAA 1 cut(s) 144
SgrDI CGTCGACG 1 cut(s) 188
SphI GCATGC 1 cut(s) 90
Sse9I AATT 1 cut(s) 161
SsiI CCGC 5 cut(s) 36, 57, 137, 176, 240
StyD4I CCNGG 2 cut(s) 149, 294
TaaI ACNGT 3 cut(s) 187, 262, 319
TaiI ACGT 1 cut(s) 273
TaqI TCGA 6 cut(s) 24, 65, 144, 189, 273, 329
TasI AATT 1 cut(s) 161
TauI GCSGC 3 cut(s) 38, 179, 243
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 3 cut(s) 32, 72, 110
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 1 cut(s) 244
TspGWI ACGGA 2 cut(s) 82, 304
XceI RCATGY 1 cut(s) 90
XmiI GTMKAC 2 cut(s) 189, 329
ZraI GACGTC 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.