Rroxscaffold_6G00427800

Armadillo/beta-catenin-like repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014865
Physical Location & Seq
Reverse (-)
48373797 .. 48374117
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00427800.1

Sequence Viewer

Length: 321 bp
ATGGCCGCCGCGTCCCTCACCAACCGGCTTCGCGACCTCGACTTGCTGCTTAGATGCGGCGTGCTCCACCGGTCAAACTCCACCTCCGCCGTCTCGCCCCTTGCCGCGGCAAATAATGAATCGCGCAAGGCGGTGTTCGAATCCGGGGCTACCAAATTGAAAGAGAAGGCGGCAATCATGGTCGAGGCCCTCACCGCCGACCCTAAAAACACCGGGCTGTTTCGGCATACGGTGGTGTTTCGATCTTCATCGGCGCCTCCTCCGGCGATGCGGATCCACTCGGTCGCGCCTCCTCCATTTGCTTCTTTCACGGAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

106

Amino Acids

11.3

Weight (kDa)

10.16

Isoelectric Point (pI)

49.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 253
AccII CGCG 5 cut(s) 11, 33, 107, 124, 287
AclWI GGATC 2 cut(s) 268, 281
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 106
AgeI ACCGGT 1 cut(s) 69
AgsI TTSAA 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 97
AlwI GGATC 2 cut(s) 268, 281
AoxI GGCC 2 cut(s) 3, 186
ApeKI GCWGC 1 cut(s) 46
AsiGI ACCGGT 1 cut(s) 69
AspLEI GCGC 3 cut(s) 126, 256, 289
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 2 cut(s) 145, 214
AsuHPI GGTGA 2 cut(s) 10, 184
AsuII TTCGAA 1 cut(s) 138
BamHI GGATCC 1 cut(s) 273
BanI GGYRCC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 33
BceAI ACGGC 1 cut(s) 74
BcnI CCSGG 2 cut(s) 145, 214
BcoDI GTCTC 1 cut(s) 97
BfoI RGCGCY 1 cut(s) 257
BisI GCNGC 7 cut(s) 6, 9, 47, 58, 105, 108, 171
BlsI GCNGC 7 cut(s) 7, 10, 48, 59, 106, 109, 172
Bme1390I CCNGG 2 cut(s) 145, 214
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 255, 275
BmrFI CCNGG 2 cut(s) 145, 214
BmsI GCATC 2 cut(s) 44, 258
Bpu14I TTCGAA 1 cut(s) 138
BpuMI CCSGG 2 cut(s) 145, 214
BsaBI GATNNNNATC 2 cut(s) 247, 272
BsaHI GRCGYC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 105, 144
BsaWI WCCGGW 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse118I RCCGGY 2 cut(s) 24, 69
Bse8I GATNNNNATC 2 cut(s) 247, 272
BseDI CCNNGG 2 cut(s) 105, 144
BseJI GATNNNNATC 2 cut(s) 247, 272
BseLI CCNNNNNNNGG 1 cut(s) 106
BseRI GAGGAG 2 cut(s) 249, 282
BseXI GCAGC 1 cut(s) 33
Bsh1236I CGCG 5 cut(s) 11, 33, 107, 124, 287
Bsh1285I CGRYCG 1 cut(s) 285
BshFI GGCC 2 cut(s) 5, 188
BshNI GGYRCC 1 cut(s) 253
BshTI ACCGGT 1 cut(s) 69
BsiEI CGRYCG 1 cut(s) 285
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 5 cut(s) 25, 70, 144, 213, 263
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 97
BsmBI CGTCTC 1 cut(s) 97
BsnI GGCC 2 cut(s) 5, 188
Bsp119I TTCGAA 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 2 cut(s) 242, 273
Bsp68I TCGCGA 1 cut(s) 33
BspANI GGCC 2 cut(s) 5, 188
BspFNI CGCG 5 cut(s) 11, 33, 107, 124, 287
BspLI GGNNCC 2 cut(s) 255, 275
BspPI GGATC 2 cut(s) 268, 281
BspT104I TTCGAA 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 253
BsrFI RCCGGY 2 cut(s) 24, 69
BssAI RCCGGY 2 cut(s) 24, 69
BssECI CCNNGG 2 cut(s) 105, 144
BssMI GATC 2 cut(s) 242, 273
BssNI GRCGYC 1 cut(s) 254
Bst4CI ACNGT 1 cut(s) 232
BstACI GRCGYC 1 cut(s) 254
BstBI TTCGAA 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 105
BstFNI CGCG 5 cut(s) 11, 33, 107, 124, 287
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 3 cut(s) 126, 256, 289
BstKTI GATC 2 cut(s) 245, 276
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 2 cut(s) 242, 273
BstMCI CGRYCG 1 cut(s) 285
BstMWI GCNNNNNNNGC 2 cut(s) 194, 223
BstSCI CCNGG 2 cut(s) 143, 212
BstUI CGCG 5 cut(s) 11, 33, 107, 124, 287
BstV1I GCAGC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BsuRI GGCC 2 cut(s) 5, 188
BtgI CCRYGG 1 cut(s) 105
BtgZI GCGATG 1 cut(s) 281
BtuMI TCGCGA 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 62
CfoI GCGC 3 cut(s) 126, 256, 289
Cfr10I RCCGGY 2 cut(s) 24, 69
Cfr13I GGNCC 1 cut(s) 187
Cfr42I CCGCGG 1 cut(s) 108
CspAI ACCGGT 1 cut(s) 69
CviAII CATG 1 cut(s) 178
CviJI RGCY 5 cut(s) 5, 28, 149, 188, 217
CviKI_1 RGCY 5 cut(s) 5, 28, 149, 188, 217
DdeI CTNAG 1 cut(s) 50
DinI GGCGCC 1 cut(s) 255
DpnI GATC 2 cut(s) 244, 275
DpnII GATC 2 cut(s) 242, 273
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 187
EgeI GGCGCC 1 cut(s) 255
EheI GGCGCC 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 1 cut(s) 181
FaiI YATR 3 cut(s) 179, 228, 319
FatI CATG 1 cut(s) 177
Fnu4HI GCNGC 7 cut(s) 6, 9, 47, 58, 105, 108, 171
Fsp4HI GCNGC 7 cut(s) 6, 9, 47, 58, 105, 108, 171
GlaI GCGC 3 cut(s) 125, 255, 288
GluI GCNGC 7 cut(s) 6, 9, 47, 58, 105, 108, 171
HaeII RGCGCY 1 cut(s) 257
HaeIII GGCC 2 cut(s) 5, 188
HapII CCGG 5 cut(s) 25, 70, 144, 213, 263
HhaI GCGC 3 cut(s) 126, 256, 289
Hin1I GRCGYC 1 cut(s) 254
Hin1II CATG 1 cut(s) 181
Hin6I GCGC 3 cut(s) 124, 254, 287
HinP1I GCGC 3 cut(s) 124, 254, 287
HinfI GANTC 2 cut(s) 119, 140
HpaII CCGG 5 cut(s) 25, 70, 144, 213, 263
HphI GGTGA 2 cut(s) 10, 184
Hpy188III TCNNGA 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 232
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 223
HpyF3I CTNAG 1 cut(s) 50
Hsp92I GRCGYC 1 cut(s) 254
Hsp92II CATG 1 cut(s) 181
HspAI GCGC 3 cut(s) 124, 254, 287
KasI GGCGCC 1 cut(s) 253
KspI CCGCGG 1 cut(s) 108
Kzo9I GATC 2 cut(s) 242, 273
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 5 cut(s) 38, 83, 157, 226, 276
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 2 cut(s) 44, 258
MalI GATC 2 cut(s) 244, 275
MboI GATC 2 cut(s) 242, 273
MboII GAAGA 1 cut(s) 237
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 1 cut(s) 155
Mly113I GGCGCC 1 cut(s) 254
MnlI CCTC 9 cut(s) 26, 47, 94, 178, 200, 267, 270, 300, 303
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 5 cut(s) 25, 70, 144, 213, 263
MspR9I CCNGG 2 cut(s) 145, 214
MvnI CGCG 5 cut(s) 11, 33, 107, 124, 287
MwoI GCNNNNNNNGC 2 cut(s) 194, 223
NarI GGCGCC 1 cut(s) 254
NciI CCSGG 2 cut(s) 145, 214
NdeII GATC 2 cut(s) 242, 273
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 2 cut(s) 255, 275
NruI TCGCGA 1 cut(s) 33
NspV TTCGAA 1 cut(s) 138
PfeI GAWTC 2 cut(s) 119, 140
PinAI ACCGGT 1 cut(s) 69
PkrI GCNGC 7 cut(s) 7, 10, 48, 59, 106, 109, 172
PluTI GGCGCC 1 cut(s) 257
PspN4I GGNNCC 2 cut(s) 255, 275
PspPI GGNCC 1 cut(s) 187
PsuI RGATCY 1 cut(s) 273
RruI TCGCGA 1 cut(s) 33
SacII CCGCGG 1 cut(s) 108
SatI GCNGC 7 cut(s) 6, 9, 47, 58, 105, 108, 171
Sau3AI GATC 2 cut(s) 242, 273
Sau96I GGNCC 1 cut(s) 187
ScrFI CCNGG 2 cut(s) 145, 214
SduI GDGCHC 1 cut(s) 66
SetI ASST 2 cut(s) 39, 86
SfaNI GCATC 2 cut(s) 44, 258
SfoI GGCGCC 1 cut(s) 255
Sfr303I CCGCGG 1 cut(s) 108
SfuI TTCGAA 1 cut(s) 138
SgrBI CCGCGG 1 cut(s) 108
Sse9I AATT 1 cut(s) 155
SspDI GGCGCC 1 cut(s) 253
StyD4I CCNGG 2 cut(s) 143, 212
TaaI ACNGT 1 cut(s) 232
TaqI TCGA 4 cut(s) 39, 138, 183, 241
TaqII GACCGA 1 cut(s) 271
TasI AATT 1 cut(s) 155
TauI GCSGC 6 cut(s) 8, 11, 60, 107, 110, 173
TfiI GAWTC 2 cut(s) 119, 140
TseI GCWGC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 132, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.