Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0014865

Physical Location & Seq

Genomic Coordinates Forward (+)

17168002 .. 17177775

Gene Structure 9774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG182100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCTCTATATGCAGAACGACCTCGACATGGCCGCCACGTCCCTCACCAACAGCTCCGCGACCTCGATCTTCTGCTCAGATCTGGCGTGCTCCGTCGTCTCACCCCTCGCCGCTCCAAACATTGAGTCGCGCAAGGCGGTGTTCGAAGCCGGGGCTACCAAATTGAAAGAGAAGGCGGCAATCACCGTCGACGCACTCACCGCCGACCCTGAAAACATCTGGGCTGTTTCGGCATACGGCGGCTCTCAGTCTTCATGTGCGACTCCTCCGGCGATGCAGATCCACTCGATTGCCTCTGCTCTCTCCGAAACCAAAAGGAAAAACCCAAGGCTTTGTTTCACAGCAATGGAAAGGCTAAACTCGAAGCTGTACTTGCAGAATGTGTACATAATGAAAGAGAATGAGAGGCTGAGGAAGAAGGCACAGCTTCTGAACCAAGAGAATCAGGCCCTTCTTTCTGAGCTGAAGCAGAAGCTTTCAAAGCCAAACAAAGCCAATGGTGCTTCAAACACTGTGCCTGATCTGAATCTTAACCTGAGCTCCACCAACAACAACAACTCAAACAATCATCCTTCCAGTTCCAGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009888 GO:0009943 GO:0009955 GO:0009965 GO:0010016 GO:0010051 GO:0010073 GO:0010075 GO:0010305 GO:0010358 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048532 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0065007 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

196

Amino Acids

21.18

Weight (kDa)

8.88

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014865)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000544 RLG00000020141 RLG00000023565 RLG00000034947 RLG00000035084
rosa_multiflora	Rmu_sc0003703.1_g000007
rosa_roxburghii	Rroxscaffold_1G00045110 Rroxscaffold_2G00147600 Rroxscaffold_6G00427800 Rroxscaffold_7G00170520
rosa_samantha	Rh1CG069500 Rh2AG247900 Rh3AG182100 Rh3CG205400 Rh5AG474400 Rh7BG245300
rosa_wichuraiana	Rw2G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	2 cut(s)	59, 130
AciI	CCGC	7 cut(s)	33, 57, 111, 137, 176, 201, 240
AclWI	GGATC	1 cut(s)	274
AcoI	YGGCCR	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	485
AfaI	GTAC	2 cut(s)	371, 386
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	3 cut(s)	166, 480, 507
AjiI	CACGTC	1 cut(s)	39
AluBI	AGCT	6 cut(s)	54, 367, 427, 463, 475, 540
AluI	AGCT	6 cut(s)	54, 367, 427, 463, 475, 540
Alw21I	GWGCWC	2 cut(s)	92, 542
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	1 cut(s)	274
AlwNI	CAGNNNCTG	2 cut(s)	430, 588
AoxI	GGCC	2 cut(s)	30, 447
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	448
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	4 cut(s)	37, 93, 175, 190
AsuII	TTCGAA	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	542
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	92, 542
BbvCI	CCTCAGC	1 cut(s)	410
BceAI	ACGGC	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	103
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	4 cut(s)	33, 111, 177, 241
BlsI	GCNGC	4 cut(s)	34, 112, 178, 242
Bme1390I	CCNGG	1 cut(s)	151
BmgBI	CACGTC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	448
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	264
BpiI	GAAGAC	1 cut(s)	243
Bpu10I	CCTNAGC	2 cut(s)	410, 536
Bpu14I	TTCGAA	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	151
BsaBI	GATNNNNATC	2 cut(s)	278, 525
BsaJI	CCNNGG	2 cut(s)	150, 326
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	576
Bse3DI	GCAATG	1 cut(s)	351
Bse8I	GATNNNNATC	2 cut(s)	278, 525
BseDI	CCNNGG	2 cut(s)	150, 326
BseGI	GGATG	1 cut(s)	568
BseJI	GATNNNNATC	2 cut(s)	278, 525
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	5 cut(s)	90, 260, 401, 450, 527
BseNI	ACTGG	1 cut(s)	576
BseRI	GAGGAG	1 cut(s)	255
Bsh1236I	CGCG	2 cut(s)	59, 130
BshFI	GGCC	2 cut(s)	32, 449
BsiHKAI	GWGCWC	2 cut(s)	92, 542
BsiSI	CCGG	2 cut(s)	150, 269
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	103
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	32, 449
Bsp119I	TTCGAA	1 cut(s)	144
Bsp1286I	GDGCHC	2 cut(s)	92, 542
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	4 cut(s)	66, 79, 279, 520
BspACI	CCGC	7 cut(s)	33, 57, 111, 137, 176, 201, 240
BspANI	GGCC	2 cut(s)	32, 449
BspCNI	CTCAG	5 cut(s)	89, 259, 402, 451, 528
BspFNI	CGCG	2 cut(s)	59, 130
BspPI	GGATC	1 cut(s)	274
BspT104I	TTCGAA	1 cut(s)	144
BsrBI	CCGCTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	351
BsrGI	TGTACA	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	576
BssECI	CCNNGG	2 cut(s)	150, 326
BssMI	GATC	4 cut(s)	66, 79, 279, 520
BssT1I	CCWWGG	1 cut(s)	326
Bst4CI	ACNGT	2 cut(s)	187, 514
BstAUI	TGTACA	1 cut(s)	384
BstBI	TTCGAA	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	5 cut(s)	76, 246, 410, 459, 536
BstF5I	GGATG	1 cut(s)	568
BstFNI	CGCG	2 cut(s)	59, 130
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	4 cut(s)	69, 82, 282, 523
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	4 cut(s)	66, 79, 279, 520
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 200, 230, 373, 481, 500
BstSCI	CCNGG	1 cut(s)	149
BstUI	CGCG	2 cut(s)	59, 130
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	2 cut(s)	79, 279
BstYI	RGATCY	2 cut(s)	79, 279
BsuRI	GGCC	2 cut(s)	32, 449
BtgZI	GCGATG	1 cut(s)	287
BtrI	CACGTC	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	568
BtsIMutI	CAGTG	1 cut(s)	510
Cac8I	GCNNGC	1 cut(s)	88
CaiI	CAGNNNCTG	2 cut(s)	430, 588
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	448
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	370, 385
CviAII	CATG	2 cut(s)	28, 255
CviQI	GTAC	2 cut(s)	370, 385
DdeI	CTNAG	5 cut(s)	76, 246, 410, 459, 536
DpnI	GATC	4 cut(s)	68, 81, 281, 522
DpnII	GATC	4 cut(s)	66, 79, 279, 520
EaeI	YGGCCR	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	326
Eco24I	GRGCYC	1 cut(s)	542
Eco53kI	GAGCTC	1 cut(s)	540
Eco57I	CTGAAG	1 cut(s)	485
EcoICRI	GAGCTC	1 cut(s)	540
EcoO109I	RGGNCCY	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	326
EcoT38I	GRGCYC	1 cut(s)	542
ErhI	CCWWGG	1 cut(s)	326
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	2 cut(s)	31, 258
FaiI	YATR	6 cut(s)	9, 11, 29, 235, 256, 389
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	2 cut(s)	27, 254
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	4 cut(s)	33, 111, 177, 241
FokI	GGATG	1 cut(s)	555
FriOI	GRGCYC	1 cut(s)	542
Fsp4HI	GCNGC	4 cut(s)	33, 111, 177, 241
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	4 cut(s)	33, 111, 177, 241
HaeIII	GGCC	2 cut(s)	32, 449
HapII	CCGG	2 cut(s)	150, 269
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	31, 258
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	4 cut(s)	125, 262, 442, 526
HpaII	CCGG	2 cut(s)	150, 269
HphI	GGTGA	4 cut(s)	37, 93, 175, 190
Hpy166II	GTNNAC	2 cut(s)	190, 385
Hpy188I	TCNGA	5 cut(s)	79, 307, 432, 460, 525
Hpy8I	GTNNAC	2 cut(s)	190, 385
Hpy99I	CGWCG	3 cut(s)	98, 191, 194
HpyAV	CCTTC	4 cut(s)	166, 412, 461, 582
HpyCH4III	ACNGT	2 cut(s)	187, 514
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	3 cut(s)	13, 277, 376
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 200, 230, 373, 481, 500
HpyF3I	CTNAG	5 cut(s)	76, 246, 410, 459, 536
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	31, 258
HspAI	GCGC	1 cut(s)	130
Kzo9I	GATC	4 cut(s)	66, 79, 279, 520
LmnI	GCTCC	4 cut(s)	59, 95, 118, 545
LpnPI	CCDG	8 cut(s)	68, 163, 205, 222, 282, 431, 531, 548
LweI	GCATC	1 cut(s)	264
MaeII	ACGT	1 cut(s)	38
MalI	GATC	4 cut(s)	68, 81, 281, 522
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	4 cut(s)	66, 79, 279, 520
MboII	GAAGA	3 cut(s)	61, 243, 427
MflI	RGATCY	2 cut(s)	79, 279
MhlI	GDGCHC	2 cut(s)	92, 542
MluCI	AATT	1 cut(s)	161
MlyI	GAGTC	2 cut(s)	134, 256
MnlI	CCTC	8 cut(s)	32, 53, 73, 116, 276, 304, 399, 405
MseI	TTAA	1 cut(s)	531
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	2 cut(s)	150, 269
MspR9I	CCNGG	1 cut(s)	151
MvnI	CGCG	2 cut(s)	59, 130
MwoI	GCNNNNNNNGC	6 cut(s)	10, 200, 230, 373, 481, 500
NciI	CCSGG	1 cut(s)	151
NdeII	GATC	4 cut(s)	66, 79, 279, 520
NlaIII	CATG	2 cut(s)	31, 258
NspV	TTCGAA	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	442, 526
PkrI	GCNGC	4 cut(s)	34, 112, 178, 242
PleI	GAGTC	2 cut(s)	133, 256
PpsI	GAGTC	2 cut(s)	133, 256
Psp124BI	GAGCTC	1 cut(s)	542
PspPI	GGNCC	1 cut(s)	448
PstNI	CAGNNNCTG	2 cut(s)	430, 588
PsuI	RGATCY	2 cut(s)	79, 279
RsaI	GTAC	2 cut(s)	371, 386
RsaNI	GTAC	2 cut(s)	370, 385
RseI	CAYNNNNRTG	1 cut(s)	344
SacI	GAGCTC	1 cut(s)	542
SalI	GTCGAC	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	4 cut(s)	33, 111, 177, 241
Sau3AI	GATC	4 cut(s)	66, 79, 279, 520
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	2 cut(s)	134, 256
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	2 cut(s)	92, 542
SfaNI	GCATC	1 cut(s)	264
SfuI	TTCGAA	1 cut(s)	144
SgrDI	CGTCGACG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	344
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	7 cut(s)	33, 57, 111, 137, 176, 201, 240
SstI	GAGCTC	1 cut(s)	542
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	2 cut(s)	187, 514
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	6 cut(s)	24, 65, 144, 189, 287, 362
TasI	AATT	1 cut(s)	161
TatI	WGTACW	2 cut(s)	369, 384
TauI	GCSGC	4 cut(s)	35, 113, 179, 243
TfiI	GAWTC	2 cut(s)	442, 526
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TscAI	CASTG	1 cut(s)	517
TspDTI	ATGAA	2 cut(s)	243, 407
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	1 cut(s)	517
XmiI	GTMKAC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.