Rroxscaffold_1G00045110

Armadillo/beta-catenin-like repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014865
Physical Location & Seq
Forward (+)
64155185 .. 64155973
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045110.1

Sequence Viewer

Length: 411 bp
ATGCGAACGACCTCGACATGGCCACGCCGTCCCTCACCAACAGCTCCACGACCTCGATCCGCTGCTCGGATCCGGCATGCTCCGTCGTCTCACCCCTCGCCGCTCCAAACATTGAGTCGCGCGCGCGTGTTCGGCCGGGTTACCAAATTGAAAGAGAAGGCGGCAATCACCGTCGACGCACTCACCGCCGACCCCGAAAACATCCGGGTCGTTTCGGCATACGGCGGCGTCTCGCCTTCATGTGCGACTCCTCCGGCGATGCGCATCCACTCGGCCGCCGCCTCCTCCATTTGCCACCTCTTCGAAAATATGATGTCGTGCCGCAGATTCTTGCTCACCGTCATTGTTTTAGTTGTGGGTGGTGGATTTTGCATTCAAATAAAGGATATTCAAGAGAAGGAGAGGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

136

Amino Acids

14.86

Weight (kDa)

11.05

Isoelectric Point (pI)

63.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 263
AccBSI CCGCTC 1 cut(s) 103
AccI GTMKAC 1 cut(s) 174
AccII CGCG 4 cut(s) 120, 122, 124, 126
AciI CCGC 8 cut(s) 60, 101, 161, 186, 225, 276, 279, 322
AclWI GGATC 3 cut(s) 51, 64, 77
AcoI YGGCCR 3 cut(s) 20, 133, 273
AcyI GRCGYC 1 cut(s) 228
AfiI CCNNNNNNNGG 2 cut(s) 18, 66
AgsI TTSAA 3 cut(s) 151, 377, 392
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
Alw26I GTCTC 2 cut(s) 93, 235
AlwI GGATC 3 cut(s) 51, 64, 77
AoxI GGCC 3 cut(s) 20, 133, 273
ApeKI GCWGC 1 cut(s) 62
ArsI GACNNNNNNTTYG 2 cut(s) 100, 132
AspLEI GCGC 4 cut(s) 122, 124, 126, 264
AsuC2I CCSGG 2 cut(s) 137, 206
AsuHPI GGTGA 5 cut(s) 27, 83, 160, 175, 328
AsuII TTCGAA 1 cut(s) 303
BalI TGGCCA 1 cut(s) 22
BamHI GGATCC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 49
BceAI ACGGC 2 cut(s) 12, 238
BcnI CCSGG 2 cut(s) 137, 206
BcoDI GTCTC 2 cut(s) 93, 235
BisI GCNGC 7 cut(s) 63, 101, 162, 226, 276, 279, 322
BlsI GCNGC 7 cut(s) 64, 102, 163, 227, 277, 280, 323
Bme1390I CCNGG 2 cut(s) 137, 206
BmiI GGNNCC 1 cut(s) 71
BmrFI CCNGG 2 cut(s) 137, 206
BmsI GCATC 2 cut(s) 249, 273
Bpu14I TTCGAA 1 cut(s) 303
BpuMI CCSGG 2 cut(s) 137, 206
BsaBI GATNNNNATC 1 cut(s) 263
BsaHI GRCGYC 1 cut(s) 228
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 66
Bse8I GATNNNNATC 1 cut(s) 263
BseGI GGATG 2 cut(s) 201, 264
BseJI GATNNNNATC 1 cut(s) 263
BseLI CCNNNNNNNGG 2 cut(s) 18, 66
BsePI GCGCGC 2 cut(s) 120, 122
BseRI GAGGAG 2 cut(s) 240, 274
BseX3I CGGCCG 2 cut(s) 133, 273
BseXI GCAGC 1 cut(s) 49
Bsh1236I CGCG 4 cut(s) 120, 122, 124, 126
Bsh1285I CGRYCG 2 cut(s) 136, 276
BshFI GGCC 3 cut(s) 22, 135, 275
BsiEI CGRYCG 2 cut(s) 136, 276
BsiSI CCGG 4 cut(s) 73, 136, 205, 254
BslFI GGGAC 1 cut(s) 15
BslI CCNNNNNNNGG 2 cut(s) 18, 66
BsmAI GTCTC 2 cut(s) 93, 235
BsmBI CGTCTC 2 cut(s) 93, 235
BsmFI GGGAC 1 cut(s) 15
BsmI GAATGC 1 cut(s) 372
BsnI GGCC 3 cut(s) 22, 135, 275
Bsp119I TTCGAA 1 cut(s) 303
Bsp143I GATC 2 cut(s) 56, 69
BspACI CCGC 8 cut(s) 60, 101, 161, 186, 225, 276, 279, 322
BspANI GGCC 3 cut(s) 22, 135, 275
BspFNI CGCG 4 cut(s) 120, 122, 124, 126
BspLI GGNNCC 1 cut(s) 71
BspPI GGATC 3 cut(s) 51, 64, 77
BspT104I TTCGAA 1 cut(s) 303
BsrBI CCGCTC 1 cut(s) 103
BssHII GCGCGC 2 cut(s) 120, 122
BssMI GATC 2 cut(s) 56, 69
BssNI GRCGYC 1 cut(s) 228
Bst4CI ACNGT 2 cut(s) 172, 340
Bst6I CTCTTC 1 cut(s) 305
BstACI GRCGYC 1 cut(s) 228
BstBI TTCGAA 1 cut(s) 303
BstC8I GCNNGC 3 cut(s) 78, 122, 124
BstEII GGTNACC 1 cut(s) 139
BstF5I GGATG 2 cut(s) 201, 264
BstFNI CGCG 4 cut(s) 120, 122, 124, 126
BstHHI GCGC 4 cut(s) 122, 124, 126, 264
BstKTI GATC 2 cut(s) 59, 72
BstMAI GTCTC 2 cut(s) 93, 235
BstMBI GATC 2 cut(s) 56, 69
BstMCI CGRYCG 2 cut(s) 136, 276
BstMWI GCNNNNNNNGC 2 cut(s) 132, 185
BstNSI RCATGY 1 cut(s) 80
BstPI GGTNACC 1 cut(s) 139
BstSCI CCNGG 2 cut(s) 135, 204
BstUI CGCG 4 cut(s) 120, 122, 124, 126
BstV1I GCAGC 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BstZI CGGCCG 2 cut(s) 133, 273
BsuRI GGCC 3 cut(s) 22, 135, 275
BtgZI GCGATG 1 cut(s) 272
BtsCI GGATG 2 cut(s) 201, 264
Cac8I GCNNGC 3 cut(s) 78, 122, 124
CfoI GCGC 4 cut(s) 122, 124, 126, 264
CseI GACGC 2 cut(s) 185, 217
CviAII CATG 3 cut(s) 18, 77, 240
CviJI RGCY 4 cut(s) 22, 44, 135, 275
CviKI_1 RGCY 4 cut(s) 22, 44, 135, 275
DpnI GATC 2 cut(s) 58, 71
DpnII GATC 2 cut(s) 56, 69
EaeI YGGCCR 3 cut(s) 20, 133, 273
EagI CGGCCG 2 cut(s) 133, 273
Eam1104I CTCTTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 305
EclXI CGGCCG 2 cut(s) 133, 273
Eco52I CGGCCG 2 cut(s) 133, 273
Eco91I GGTNACC 1 cut(s) 139
EcoO65I GGTNACC 1 cut(s) 139
Esp3I CGTCTC 2 cut(s) 93, 235
FaeI CATG 3 cut(s) 21, 80, 243
FaiI YATR 5 cut(s) 19, 78, 220, 241, 311
FaqI GGGAC 1 cut(s) 15
FatI CATG 3 cut(s) 17, 76, 239
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 7 cut(s) 63, 101, 162, 226, 276, 279, 322
FokI GGATG 2 cut(s) 188, 251
Fsp4HI GCNGC 7 cut(s) 63, 101, 162, 226, 276, 279, 322
FspAI RTGCGCAY 1 cut(s) 263
FspI TGCGCA 1 cut(s) 263
GlaI GCGC 4 cut(s) 121, 123, 125, 263
GluI GCNGC 7 cut(s) 63, 101, 162, 226, 276, 279, 322
HaeIII GGCC 3 cut(s) 22, 135, 275
HapII CCGG 4 cut(s) 73, 136, 205, 254
HgaI GACGC 2 cut(s) 185, 217
HhaI GCGC 4 cut(s) 122, 124, 126, 264
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 3 cut(s) 21, 80, 243
Hin6I GCGC 4 cut(s) 120, 122, 124, 262
HinP1I GCGC 4 cut(s) 120, 122, 124, 262
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 3 cut(s) 115, 247, 327
HpaII CCGG 4 cut(s) 73, 136, 205, 254
HphI GGTGA 5 cut(s) 27, 83, 160, 175, 328
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 1 cut(s) 392
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 3 cut(s) 88, 176, 179
HpyAV CCTTC 3 cut(s) 151, 246, 391
HpyCH4III ACNGT 2 cut(s) 172, 340
HpyCH4V TGCA 1 cut(s) 372
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 185
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 3 cut(s) 21, 80, 243
HspAI GCGC 4 cut(s) 120, 122, 124, 262
Kzo9I GATC 2 cut(s) 56, 69
LmnI GCTCC 3 cut(s) 49, 85, 108
LpnPI CCDG 4 cut(s) 86, 149, 218, 267
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 2 cut(s) 249, 273
MaeIII GTNAC 1 cut(s) 139
MalI GATC 2 cut(s) 58, 71
MauBI CGCGCGCG 2 cut(s) 120, 122
MbiI CCGCTC 1 cut(s) 103
MboI GATC 2 cut(s) 56, 69
MboII GAAGA 1 cut(s) 292
MflI RGATCY 1 cut(s) 69
MlsI TGGCCA 1 cut(s) 22
MluCI AATT 1 cut(s) 146
MluNI TGGCCA 1 cut(s) 22
MlyI GAGTC 2 cut(s) 124, 241
MnlI CCTC 9 cut(s) 22, 43, 63, 106, 261, 292, 295, 308, 396
Mox20I TGGCCA 1 cut(s) 22
MscI TGGCCA 1 cut(s) 22
Msp20I TGGCCA 1 cut(s) 22
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 4 cut(s) 73, 136, 205, 254
MspR9I CCNGG 2 cut(s) 137, 206
Mva1269I GAATGC 1 cut(s) 372
MvnI CGCG 4 cut(s) 120, 122, 124, 126
MwoI GCNNNNNNNGC 2 cut(s) 132, 185
NciI CCSGG 2 cut(s) 137, 206
NdeII GATC 2 cut(s) 56, 69
NlaIII CATG 3 cut(s) 21, 80, 243
NlaIV GGNNCC 1 cut(s) 71
NmeAIII GCCGAG 1 cut(s) 251
NsbI TGCGCA 1 cut(s) 263
NspI RCATGY 1 cut(s) 80
NspV TTCGAA 1 cut(s) 303
PaeI GCATGC 1 cut(s) 80
PauI GCGCGC 2 cut(s) 120, 122
PctI GAATGC 1 cut(s) 372
PfeI GAWTC 1 cut(s) 327
PkrI GCNGC 7 cut(s) 64, 102, 163, 227, 277, 280, 323
PleI GAGTC 2 cut(s) 123, 241
PpsI GAGTC 2 cut(s) 123, 241
PspEI GGTNACC 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 71
PsuI RGATCY 1 cut(s) 69
PteI GCGCGC 2 cut(s) 120, 122
SalI GTCGAC 1 cut(s) 173
SatI GCNGC 7 cut(s) 63, 101, 162, 226, 276, 279, 322
Sau3AI GATC 2 cut(s) 56, 69
SchI GAGTC 2 cut(s) 124, 241
ScrFI CCNGG 2 cut(s) 137, 206
SetI ASST 4 cut(s) 14, 46, 55, 300
SfaNI GCATC 2 cut(s) 249, 273
SfuI TTCGAA 1 cut(s) 303
SgrDI CGTCGACG 1 cut(s) 173
SphI GCATGC 1 cut(s) 80
Sse9I AATT 1 cut(s) 146
SsiI CCGC 8 cut(s) 60, 101, 161, 186, 225, 276, 279, 322
StyD4I CCNGG 2 cut(s) 135, 204
TaaI ACNGT 2 cut(s) 172, 340
TaqI TCGA 4 cut(s) 14, 55, 174, 303
TasI AATT 1 cut(s) 146
TauI GCSGC 6 cut(s) 103, 164, 228, 278, 281, 324
TfiI GAWTC 1 cut(s) 327
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 228
TspGWI ACGGA 1 cut(s) 72
XceI RCATGY 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.