Rroxscaffold_7G00170520
NAC Family

Topless-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0014865
Physical Location & Seq
Forward (+)
10965887 .. 10969825
3939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170520.1

Sequence Viewer

Length: 570 bp
ATGACCTCAACATGTCCGCCGCGTCCGTCACCAAGCGCCCGCGACCTCGACTTGTCGCTCGGATCCGGCATCCTCCACCGGTCAAACGCCACCTCCGCCATCTCGCCCCTCGCCGCCGCAAACGATGAGTCGCGCAATCACCGTCGAGGCCTCATCGGCGACCCGAAAACACCTCCTCTCGTTTCGGTCTTCATCGGCGCCTTCTCCGGCGACGCGAACCACTTGATCGGCGCCTCCTCCATTTGCCGCGCTTCGGAAATATTACGCCATGCCGCAGTCGAGAGAGAGAGGGACACGTACGAGAGGAAGAGAGAATATGATAGGAGAAATCGTCACAAAAACTTCGTCAACTCAATGATCCGATATCTTGACCATACCAATCTTGCAGTAGTTGCACGAAGCTTGGAGCGCCACTCTGCCTTCTTCTTCAACTTGAAGTATTTCGAGGATTGCTTCATTGGTGGAAACCTTGACGAAGCTGATGATTACCTCAGCGGTTTCACCTCCGTCGACGACAATTCTTTCTCGACTCTTCTTTTTTTGAGATTAGATGGCACAAGTTCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
NACHT WD40

Protein Analysis

189

Amino Acids

21.09

Weight (kDa)

6.65

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR1-like_2nd PF21889 144 - 182 6.1e-09 TPR1-like, CTLH-containing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 197, 230
AccI GTMKAC 1 cut(s) 510
AccII CGCG 5 cut(s) 22, 42, 133, 215, 249
AciI CCGC 9 cut(s) 17, 20, 40, 96, 114, 117, 247, 273, 495
AclWI GGATC 3 cut(s) 57, 70, 352
AcyI GRCGYC 2 cut(s) 198, 231
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 253
AflIII ACRYGT 2 cut(s) 11, 294
AgeI ACCGGT 1 cut(s) 78
AgsI TTSAA 2 cut(s) 430, 436
AluBI AGCT 2 cut(s) 402, 479
AluI AGCT 2 cut(s) 402, 479
AlwI GGATC 3 cut(s) 57, 70, 352
AoxI GGCC 1 cut(s) 148
ArsI GACNNNNNNTTYG 4 cut(s) 113, 145, 330, 362
AsiGI ACCGGT 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 440
AspLEI GCGC 6 cut(s) 38, 135, 200, 233, 251, 411
AsuHPI GGTGA 3 cut(s) 21, 131, 493
BamHI GGATCC 1 cut(s) 62
BanI GGYRCC 2 cut(s) 197, 230
BbsI GAAGAC 1 cut(s) 181
BbvCI CCTCAGC 1 cut(s) 491
BccI CCATC 2 cut(s) 107, 545
BfaI CTAG 1 cut(s) 568
BfoI RGCGCY 4 cut(s) 39, 201, 234, 412
BglI GCCNNNNNGGC 1 cut(s) 156
BisI GCNGC 5 cut(s) 20, 114, 117, 247, 273
BlsI GCNGC 5 cut(s) 21, 115, 118, 248, 274
BmiI GGNNCC 3 cut(s) 64, 199, 232
BmsI GCATC 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 181
BplI GAGNNNNNCTC 2 cut(s) 398, 430
Bpu10I CCTNAGC 1 cut(s) 491
BsaAI YACGTR 1 cut(s) 297
BsaHI GRCGYC 2 cut(s) 198, 231
BsaWI WCCGGW 1 cut(s) 78
BsaXI ACNNNNNCTCC 4 cut(s) 77, 107, 316, 346
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse118I RCCGGY 1 cut(s) 78
BseGI GGATG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 505
BseRI GAGGAG 2 cut(s) 165, 226
Bsh1236I CGCG 5 cut(s) 22, 42, 133, 215, 249
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 2 cut(s) 197, 230
BshTI ACCGGT 1 cut(s) 78
BsiSI CCGG 3 cut(s) 66, 79, 207
BsiWI CGTACG 1 cut(s) 297
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 1 cut(s) 150
Bsp143I GATC 3 cut(s) 62, 225, 357
BspACI CCGC 9 cut(s) 17, 20, 40, 96, 114, 117, 247, 273, 495
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 504
BspFNI CGCG 5 cut(s) 22, 42, 133, 215, 249
BspLI GGNNCC 3 cut(s) 64, 199, 232
BspPI GGATC 3 cut(s) 57, 70, 352
BspT107I GGYRCC 2 cut(s) 197, 230
BsrFI RCCGGY 1 cut(s) 78
BssAI RCCGGY 1 cut(s) 78
BssMI GATC 3 cut(s) 62, 225, 357
BssNI GRCGYC 2 cut(s) 198, 231
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 2 cut(s) 302, 537
BstACI GRCGYC 2 cut(s) 198, 231
BstAPI GCANNNNNTGC 1 cut(s) 392
BstBAI YACGTR 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 491
BstF5I GGATG 1 cut(s) 69
BstFNI CGCG 5 cut(s) 22, 42, 133, 215, 249
BstH2I RGCGCY 4 cut(s) 39, 201, 234, 412
BstHHI GCGC 6 cut(s) 38, 135, 200, 233, 251, 411
BstKTI GATC 3 cut(s) 65, 228, 360
BstMBI GATC 3 cut(s) 62, 225, 357
BstMWI GCNNNNNNNGC 4 cut(s) 95, 156, 392, 408
BstNSI RCATGY 1 cut(s) 15
BstUI CGCG 5 cut(s) 22, 42, 133, 215, 249
BstV2I GAAGAC 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 40
CfoI GCGC 6 cut(s) 38, 135, 200, 233, 251, 411
Cfr10I RCCGGY 1 cut(s) 78
CseI GACGC 2 cut(s) 11, 221
Csp6I GTAC 1 cut(s) 298
CspAI ACCGGT 1 cut(s) 78
CviAII CATG 2 cut(s) 12, 269
CviJI RGCY 3 cut(s) 150, 402, 479
CviKI_1 RGCY 3 cut(s) 150, 402, 479
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 1 cut(s) 491
DinI GGCGCC 2 cut(s) 199, 232
DpnI GATC 3 cut(s) 64, 227, 359
DpnII GATC 3 cut(s) 62, 225, 357
Eam1104I CTCTTC 2 cut(s) 302, 537
EarI CTCTTC 2 cut(s) 302, 537
EciI GGCGGA 2 cut(s) 6, 85
Eco147I AGGCCT 1 cut(s) 150
Eco32I GATATC 1 cut(s) 365
EcoRV GATATC 1 cut(s) 365
EgeI GGCGCC 2 cut(s) 199, 232
EheI GGCGCC 2 cut(s) 199, 232
FaeI CATG 2 cut(s) 15, 272
FaiI YATR 5 cut(s) 13, 270, 318, 375, 565
FaqI GGGAC 1 cut(s) 305
FatI CATG 2 cut(s) 11, 268
FauI CCCGC 1 cut(s) 47
FblI GTMKAC 1 cut(s) 510
Fnu4HI GCNGC 5 cut(s) 20, 114, 117, 247, 273
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 5 cut(s) 20, 114, 117, 247, 273
FspBI CTAG 1 cut(s) 568
GlaI GCGC 6 cut(s) 37, 134, 199, 232, 250, 410
GluI GCNGC 5 cut(s) 20, 114, 117, 247, 273
HaeII RGCGCY 4 cut(s) 39, 201, 234, 412
HaeIII GGCC 1 cut(s) 150
HapII CCGG 3 cut(s) 66, 79, 207
HgaI GACGC 2 cut(s) 11, 221
HhaI GCGC 6 cut(s) 38, 135, 200, 233, 251, 411
Hin1I GRCGYC 2 cut(s) 198, 231
Hin1II CATG 2 cut(s) 15, 272
Hin6I GCGC 6 cut(s) 36, 133, 198, 231, 249, 409
HinP1I GCGC 6 cut(s) 36, 133, 198, 231, 249, 409
HincII GTYRAC 2 cut(s) 349, 511
HindII GTYRAC 2 cut(s) 349, 511
HindIII AAGCTT 1 cut(s) 400
HinfI GANTC 2 cut(s) 128, 529
HpaII CCGG 3 cut(s) 66, 79, 207
HphI GGTGA 3 cut(s) 21, 131, 493
Hpy166II GTNNAC 2 cut(s) 349, 511
Hpy188I TCNGA 3 cut(s) 62, 256, 362
Hpy188III TCNNGA 3 cut(s) 280, 368, 526
Hpy8I GTNNAC 2 cut(s) 349, 511
Hpy99I CGWCG 4 cut(s) 147, 215, 512, 515
HpyAV CCTTC 2 cut(s) 211, 430
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 2 cut(s) 386, 395
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 156, 392, 408
HpyF3I CTNAG 1 cut(s) 491
HpySE526I ACGT 1 cut(s) 296
Hsp92I GRCGYC 2 cut(s) 198, 231
Hsp92II CATG 2 cut(s) 15, 272
HspAI GCGC 6 cut(s) 36, 133, 198, 231, 249, 409
KasI GGCGCC 2 cut(s) 197, 230
Kzo9I GATC 3 cut(s) 62, 225, 357
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 3 cut(s) 79, 92, 220
LweI GCATC 1 cut(s) 78
MaeI CTAG 1 cut(s) 568
MaeII ACGT 1 cut(s) 296
MaeIII GTNAC 2 cut(s) 27, 332
MalI GATC 3 cut(s) 64, 227, 359
MboI GATC 3 cut(s) 62, 225, 357
MboII GAAGA 5 cut(s) 181, 319, 415, 418, 524
MflI RGATCY 1 cut(s) 62
MluCI AATT 1 cut(s) 517
Mly113I GGCGCC 2 cut(s) 198, 231
MlyI GAGTC 2 cut(s) 137, 523
MroXI GAANNNNTTC 1 cut(s) 440
MspA1I CMGCKG 1 cut(s) 495
MspI CCGG 3 cut(s) 66, 79, 207
MvnI CGCG 5 cut(s) 22, 42, 133, 215, 249
MwoI GCNNNNNNNGC 4 cut(s) 95, 156, 392, 408
NarI GGCGCC 2 cut(s) 198, 231
NdeII GATC 3 cut(s) 62, 225, 357
NlaIII CATG 2 cut(s) 15, 272
NlaIV GGNNCC 3 cut(s) 64, 199, 232
NmuCI GTSAC 2 cut(s) 27, 332
NspI RCATGY 1 cut(s) 15
PceI AGGCCT 1 cut(s) 150
PciI ACATGT 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 440
Pfl23II CGTACG 1 cut(s) 297
PinAI ACCGGT 1 cut(s) 78
PkrI GCNGC 5 cut(s) 21, 115, 118, 248, 274
PleI GAGTC 2 cut(s) 136, 523
PluTI GGCGCC 2 cut(s) 201, 234
PpsI GAGTC 2 cut(s) 136, 523
Ppu21I YACGTR 1 cut(s) 297
PscI ACATGT 1 cut(s) 11
PspLI CGTACG 1 cut(s) 297
PspN4I GGNNCC 3 cut(s) 64, 199, 232
PsuI RGATCY 1 cut(s) 62
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SalI GTCGAC 1 cut(s) 509
SatI GCNGC 5 cut(s) 20, 114, 117, 247, 273
Sau3AI GATC 3 cut(s) 62, 225, 357
SchI GAGTC 2 cut(s) 137, 523
SfaNI GCATC 1 cut(s) 78
SfoI GGCGCC 2 cut(s) 199, 232
SgrDI CGTCGACG 1 cut(s) 509
Sse9I AATT 1 cut(s) 517
SseBI AGGCCT 1 cut(s) 150
SsiI CCGC 9 cut(s) 17, 20, 40, 96, 114, 117, 247, 273, 495
SspDI GGCGCC 2 cut(s) 197, 230
SspI AATATT 1 cut(s) 261
SspMI CTAG 1 cut(s) 568
StuI AGGCCT 1 cut(s) 150
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 1 cut(s) 299
TaqI TCGA 6 cut(s) 48, 145, 279, 444, 510, 527
TaqII GACCGA 1 cut(s) 175
TasI AATT 1 cut(s) 517
TauI GCSGC 5 cut(s) 22, 116, 119, 249, 275
TseFI GTSAC 2 cut(s) 27, 332
Tsp45I GTSAC 2 cut(s) 27, 332
TspDTI ATGAA 3 cut(s) 181, 445, 552
TspGWI ACGGA 2 cut(s) 15, 496
XceI RCATGY 1 cut(s) 15
XmiI GTMKAC 1 cut(s) 510
XmnI GAANNNNTTC 1 cut(s) 440
XspI CTAG 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.