Rmu_sc0003703.1_g000007

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003703.1
OG0014865
Physical Location & Seq
Reverse (-)
32091 .. 33497
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003703.1_g000007.1.cds

Sequence Viewer

Length: 303 bp
atggctagattttcttctatctctaattccaactgccctctttgtagccaaggggatgaggatattaatcacctcttcttctcctgcccctttgatactagagtttggcaagctgctggcagacctaaaattcaaaagccacacctccatcgccgacctcttatacactctcctccccaacctcctctccactctccagcgcctcaaggccctcccgaccaatgcaacgacacgtcgttcaccggcaggaagctctacatgcagagcgacctcgacatggccaccgcgtccctcaccaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 zf-RVT

Protein Analysis

100

Amino Acids

11.16

Weight (kDa)

7.75

Isoelectric Point (pI)

61.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 287
AciI CCGC 1 cut(s) 285
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 277
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 1 cut(s) 134
AjiI CACGTC 1 cut(s) 234
AluBI AGCT 2 cut(s) 113, 253
AluI AGCT 2 cut(s) 113, 253
AoxI GGCC 2 cut(s) 208, 279
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 129
AseI ATTAAT 1 cut(s) 66
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 209
AsuHPI GGTGA 3 cut(s) 62, 232, 286
BaeI ACNNNNGTAYC 2 cut(s) 87, 120
BalI TGGCCA 1 cut(s) 281
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 156
BfaI CTAG 3 cut(s) 6, 99, 301
BfoI RGCGCY 1 cut(s) 203
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmgBI CACGTC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 209
BpmI CTGGAG 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 189
BsaBI GATNNNNATC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse118I RCCGGY 1 cut(s) 242
Bse8I GATNNNNATC 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 49
BseGI GGATG 1 cut(s) 61
BseJI GATNNNNATC 1 cut(s) 66
BseLI CCNNNNNNNGG 1 cut(s) 277
BseRI GAGGAG 2 cut(s) 162, 174
BseXI GCAGC 1 cut(s) 100
Bsh1236I CGCG 1 cut(s) 287
BshFI GGCC 2 cut(s) 210, 281
BsiSI CCGG 1 cut(s) 243
BslFI GGGAC 1 cut(s) 274
BslI CCNNNNNNNGG 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 274
BsnI GGCC 2 cut(s) 210, 281
BspACI CCGC 1 cut(s) 285
BspANI GGCC 2 cut(s) 210, 281
BspFNI CGCG 1 cut(s) 287
BsrFI RCCGGY 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 111, 118
BstF5I GGATG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 287
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstNSI RCATGY 1 cut(s) 262
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 1 cut(s) 100
BsuRI GGCC 2 cut(s) 210, 281
BtgZI GCGATG 1 cut(s) 134
BtrI CACGTC 1 cut(s) 234
BtsCI GGATG 1 cut(s) 61
Cac8I GCNNGC 2 cut(s) 111, 118
CfoI GCGC 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 209
CseI GACGC 1 cut(s) 276
CviAII CATG 2 cut(s) 259, 277
CviJI RGCY 7 cut(s) 5, 48, 113, 139, 210, 253, 281
CviKI_1 RGCY 7 cut(s) 5, 48, 113, 139, 210, 253, 281
EaeI YGGCCR 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 2 cut(s) 262, 280
FaiI YATR 3 cut(s) 164, 260, 278
FaqI GGGAC 1 cut(s) 274
FatI CATG 2 cut(s) 258, 276
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 3 cut(s) 6, 99, 301
GlaI GCGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 180
HaeII RGCGCY 1 cut(s) 203
HaeIII GGCC 2 cut(s) 210, 281
HapII CCGG 1 cut(s) 243
HgaI GACGC 1 cut(s) 276
HhaI GCGC 1 cut(s) 202
Hin1II CATG 2 cut(s) 262, 280
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HpaII CCGG 1 cut(s) 243
HphI GGTGA 3 cut(s) 62, 232, 286
Hpy166II GTNNAC 1 cut(s) 240
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 240
Hpy99I CGWCG 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 225, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
HpySE526I ACGT 1 cut(s) 233
Hsp92II CATG 2 cut(s) 262, 280
HspAI GCGC 1 cut(s) 200
LpnPI CCDG 5 cut(s) 97, 102, 210, 232, 256
Lsp1109I GCAGC 1 cut(s) 100
MaeI CTAG 3 cut(s) 6, 99, 301
MaeII ACGT 1 cut(s) 233
MboII GAAGA 3 cut(s) 6, 67, 70
MlsI TGGCCA 1 cut(s) 281
MluCI AATT 2 cut(s) 25, 129
MluNI TGGCCA 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 54
Mox20I TGGCCA 1 cut(s) 281
MscI TGGCCA 1 cut(s) 281
MseI TTAA 1 cut(s) 66
Msp20I TGGCCA 1 cut(s) 281
MspI CCGG 1 cut(s) 243
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 259
NlaIII CATG 2 cut(s) 262, 280
NspI RCATGY 1 cut(s) 262
PkrI GCNGC 1 cut(s) 115
PshBI ATTAAT 1 cut(s) 66
PspPI GGNCC 1 cut(s) 209
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 114
Sau96I GGNCC 1 cut(s) 209
SetI ASST 9 cut(s) 75, 115, 127, 147, 160, 184, 236, 255, 273
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
Sse9I AATT 2 cut(s) 25, 129
SsiI CCGC 1 cut(s) 285
SspMI CTAG 3 cut(s) 6, 99, 301
StyI CCWWGG 1 cut(s) 49
TaiI ACGT 1 cut(s) 236
TaqI TCGA 1 cut(s) 273
TasI AATT 2 cut(s) 25, 129
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseI GCWGC 1 cut(s) 113
VspI ATTAAT 1 cut(s) 66
XapI RAATTY 1 cut(s) 129
XceI RCATGY 1 cut(s) 262
XspI CTAG 3 cut(s) 6, 99, 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.