Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014865

Physical Location & Seq

Genomic Coordinates Forward (+)

57494124 .. 57497308

Gene Structure 3185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034947

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCTCTACATGCAGAACGACCTCAACATGGCTGCCGCGTCCCTCACCAACAGCTCCGTGACCTCGATCTGCTGCTCAGATCTGGCGTGCTCCGTTGTCTTACCCCTCGCCGCTCCAAACATTGAGTCGCGCAAGGCGGTGTTTGAAGCCGGGGCTACCAAATTGAAAGAGAAGGCGGCAATCACCGTCGACGCACTCACCGCCAACCCTGAAAACATCTGGGCTGTTTCGGCATACGGCGGCGTCTCAGTCTTCATGTGCGACTCCTCCGGCGATGCAGATCCACTCAGAATGACAAAGAAGAAGGGTGAAAAAGCTTCCCAAAAGGAAGCACCTACTGCCCTTGGACGAAGGAAGCAAAATTTGCCAAACGGTGAAGAGCATGCCCAGTCTTGCAAAATGCCCAAGCGTGCTGCTGCATGTAAAGACTTTAAGGACAAGTCTGTCCATATTACTGATGAGTCTGATCTCATCGCCAAGCAAGGAGGAACAGATTGTGCCAGAAGAAGGTCTTGCTGTATGTTGACTTGTGGCAAGGACCCAGATAATGAGACGCCGAGCAGAAGACTCACTCAATTTATCTTGCATAGTGAAGATGGTACTGCAAGACCACTTGAGATGGTGGAAGCTGGTCTCTTTATAACCGGCACTATATTGCCTCTTTGTGAAAGGTCTGAGAAGGACTCGGACAGCAGCATTAAATGTGAAGGTTTTGGGCGAATAGATGCTCGGAAGGTCTCTGGTTACGATGAGGGCTCTCCAATAATATGGCTTTCTCAGACTCTGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008356 GO:0009292 GO:0009294 GO:0009790 GO:0009791 GO:0009793 GO:0009909 GO:0009910 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010216 GO:0010424 GO:0010468 GO:0016740 GO:0016741 GO:0019222 GO:0022402 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0032776 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0044764 GO:0046483 GO:0048316 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051301 GO:0051704 GO:0060255 GO:0061458 GO:0061640 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:1901360 GO:1903047 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH DNA_methylase DNMT1-RFD

Protein Analysis

264

Amino Acids

28.36

Weight (kDa)

6.34

Isoelectric Point (pI)

59.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNMT1-RFD	PF12047	183 - 259	2.5e-10	Cytosine specific DNA methyltransferase replication foci domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014865)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000544 RLG00000020141 RLG00000023565 RLG00000034947 RLG00000035084
rosa_multiflora	Rmu_sc0003703.1_g000007
rosa_roxburghii	Rroxscaffold_1G00045110 Rroxscaffold_2G00147600 Rroxscaffold_6G00427800 Rroxscaffold_7G00170520
rosa_samantha	Rh1CG069500 Rh2AG247900 Rh3AG182100 Rh3CG205400 Rh5AG474400 Rh7BG245300
rosa_wichuraiana	Rw2G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	641
AasI	GACNNNNNNGTC	1 cut(s)	443
AccBSI	CCGCTC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	2 cut(s)	38, 130
AciI	CCGC	6 cut(s)	36, 111, 137, 176, 201, 240
AclWI	GGATC	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	361
AcyI	GRCGYC	2 cut(s)	243, 554
AfaI	GTAC	1 cut(s)	601
AfiI	CCNNNNNNNGG	2 cut(s)	28, 507
AgsI	TTSAA	2 cut(s)	146, 166
AluBI	AGCT	3 cut(s)	54, 317, 629
AluI	AGCT	3 cut(s)	54, 317, 629
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	4 cut(s)	250, 545, 638, 742
AlwI	GGATC	1 cut(s)	275
AlwNI	CAGNNNCTG	1 cut(s)	784
ApeKI	GCWGC	5 cut(s)	32, 72, 413, 416, 693
ApoI	RAATTY	1 cut(s)	361
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	538
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	5 cut(s)	37, 175, 190, 320, 386
AvaII	GGWCC	1 cut(s)	538
BanII	GRGCYC	1 cut(s)	758
BbsI	GAAGAC	2 cut(s)	244, 571
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	5 cut(s)	19, 59, 400, 403, 705
BccI	CCATC	2 cut(s)	590, 613
BceAI	ACGGC	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	4 cut(s)	250, 545, 638, 742
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	9 cut(s)	33, 36, 73, 111, 177, 241, 414, 417, 694
BlsI	GCNGC	9 cut(s)	34, 37, 74, 112, 178, 242, 415, 418, 695
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	538
BmgT120I	GGNCC	1 cut(s)	538
BmiI	GGNNCC	1 cut(s)	540
BmrFI	CCNGG	1 cut(s)	151
BmrI	ACTGGG	1 cut(s)	382
BmsI	GCATC	2 cut(s)	265, 715
BmuI	ACTGGG	1 cut(s)	382
BpiI	GAAGAC	2 cut(s)	244, 571
BplI	GAGNNNNNCTC	2 cut(s)	668, 700
BpuEI	CTTGAG	1 cut(s)	635
BpuMI	CCSGG	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	279
BsaHI	GRCGYC	2 cut(s)	243, 554
BsaI	GGTCTC	2 cut(s)	638, 742
BsaJI	CCNNGG	2 cut(s)	150, 343
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 507
Bse118I	RCCGGY	1 cut(s)	644
Bse1I	ACTGG	1 cut(s)	388
Bse8I	GATNNNNATC	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	150, 343
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	2 cut(s)	28, 507
BseMII	CTCAG	5 cut(s)	90, 261, 301, 666, 791
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	256
BseXI	GCAGC	5 cut(s)	19, 59, 400, 403, 705
Bsh1236I	CGCG	2 cut(s)	38, 130
BsiHKAI	GWGCWC	1 cut(s)	92
BsiSI	CCGG	3 cut(s)	150, 270, 645
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	2 cut(s)	28, 507
BsmAI	GTCTC	4 cut(s)	250, 545, 638, 742
BsmBI	CGTCTC	2 cut(s)	250, 545
BsmFI	GGGAC	1 cut(s)	25
Bso31I	GGTCTC	2 cut(s)	638, 742
Bsp1286I	GDGCHC	2 cut(s)	92, 758
Bsp143I	GATC	4 cut(s)	66, 79, 280, 466
BspACI	CCGC	6 cut(s)	36, 111, 137, 176, 201, 240
BspCNI	CTCAG	5 cut(s)	89, 260, 300, 667, 790
BspFNI	CGCG	2 cut(s)	38, 130
BspLI	GGNNCC	1 cut(s)	540
BspPI	GGATC	1 cut(s)	275
BspQI	GCTCTTC	1 cut(s)	372
BspTNI	GGTCTC	2 cut(s)	638, 742
BsrBI	CCGCTC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	644
BsrI	ACTGG	1 cut(s)	388
BssAI	RCCGGY	1 cut(s)	644
BssECI	CCNNGG	2 cut(s)	150, 343
BssMI	GATC	4 cut(s)	66, 79, 280, 466
BssNI	GRCGYC	2 cut(s)	243, 554
BssT1I	CCWWGG	1 cut(s)	343
Bst4CI	ACNGT	2 cut(s)	187, 374
Bst6I	CTCTTC	1 cut(s)	372
BstACI	GRCGYC	2 cut(s)	243, 554
BstAPI	GCANNNNNTGC	2 cut(s)	338, 364
BstC8I	GCNNGC	3 cut(s)	88, 384, 411
BstDEI	CTNAG	5 cut(s)	76, 247, 287, 675, 777
BstFNI	CGCG	2 cut(s)	38, 130
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	4 cut(s)	69, 82, 283, 469
BstMAI	GTCTC	4 cut(s)	250, 545, 638, 742
BstMBI	GATC	4 cut(s)	66, 79, 280, 466
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 200, 230, 338, 364
BstNSI	RCATGY	3 cut(s)	13, 386, 423
BstSCI	CCNGG	1 cut(s)	149
BstUI	CGCG	2 cut(s)	38, 130
BstV1I	GCAGC	5 cut(s)	19, 59, 400, 403, 705
BstV2I	GAAGAC	2 cut(s)	244, 571
BstX2I	RGATCY	2 cut(s)	79, 280
BstXI	CCANNNNNNTGG	1 cut(s)	768
BstYI	RGATCY	2 cut(s)	79, 280
BtgZI	GCGATG	2 cut(s)	288, 457
Cac8I	GCNNGC	3 cut(s)	88, 384, 411
CaiI	CAGNNNCTG	1 cut(s)	784
CfoI	GCGC	1 cut(s)	132
Cfr10I	RCCGGY	1 cut(s)	644
Cfr13I	GGNCC	1 cut(s)	538
CseI	GACGC	4 cut(s)	27, 200, 232, 562
Csp6I	GTAC	1 cut(s)	600
CviAII	CATG	5 cut(s)	10, 28, 256, 383, 420
CviJI	RGCY	9 cut(s)	32, 54, 149, 155, 224, 317, 629, 756, 772
CviKI_1	RGCY	9 cut(s)	32, 54, 149, 155, 224, 317, 629, 756, 772
CviQI	GTAC	1 cut(s)	600
DdeI	CTNAG	5 cut(s)	76, 247, 287, 675, 777
DpnI	GATC	4 cut(s)	68, 81, 282, 468
DpnII	GATC	4 cut(s)	66, 79, 280, 466
DrdI	GACNNNNNNGTC	1 cut(s)	443
DseDI	GACNNNNNNGTC	1 cut(s)	443
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	758
Eco31I	GGTCTC	2 cut(s)	638, 742
Eco47I	GGWCC	1 cut(s)	538
EcoO109I	RGGNCCY	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	758
ErhI	CCWWGG	1 cut(s)	343
Esp3I	CGTCTC	2 cut(s)	250, 545
FaeI	CATG	5 cut(s)	13, 31, 259, 386, 423
FalI	AAGNNNNNCTT	2 cut(s)	496, 528
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	5 cut(s)	9, 27, 255, 382, 419
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	9 cut(s)	33, 36, 73, 111, 177, 241, 414, 417, 694
FriOI	GRGCYC	1 cut(s)	758
Fsp4HI	GCNGC	9 cut(s)	33, 36, 73, 111, 177, 241, 414, 417, 694
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	9 cut(s)	33, 36, 73, 111, 177, 241, 414, 417, 694
HapII	CCGG	3 cut(s)	150, 270, 645
HgaI	GACGC	4 cut(s)	27, 200, 232, 562
HhaI	GCGC	1 cut(s)	132
Hin1I	GRCGYC	2 cut(s)	243, 554
Hin1II	CATG	5 cut(s)	13, 31, 259, 386, 423
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HincII	GTYRAC	2 cut(s)	190, 525
HindII	GTYRAC	2 cut(s)	190, 525
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	6 cut(s)	125, 263, 461, 567, 683, 781
HpaII	CCGG	3 cut(s)	150, 270, 645
HphI	GGTGA	5 cut(s)	37, 175, 190, 320, 386
Hpy166II	GTNNAC	2 cut(s)	190, 525
Hpy188I	TCNGA	8 cut(s)	79, 290, 466, 676, 688, 732, 780, 786
Hpy8I	GTNNAC	2 cut(s)	190, 525
Hpy99I	CGWCG	2 cut(s)	191, 194
HpyAV	CCTTC	7 cut(s)	166, 298, 345, 501, 673, 701, 727
HpyCH4III	ACNGT	2 cut(s)	187, 374
HpyCH4V	TGCA	6 cut(s)	13, 278, 396, 419, 586, 605
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 200, 230, 338, 364
HpyF3I	CTNAG	5 cut(s)	76, 247, 287, 675, 777
Hsp92I	GRCGYC	2 cut(s)	243, 554
Hsp92II	CATG	5 cut(s)	13, 31, 259, 386, 423
HspAI	GCGC	1 cut(s)	130
Kzo9I	GATC	4 cut(s)	66, 79, 280, 466
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	3 cut(s)	59, 95, 118
Lsp1109I	GCAGC	5 cut(s)	19, 59, 400, 403, 705
LweI	GCATC	2 cut(s)	265, 715
MaeIII	GTNAC	2 cut(s)	58, 743
MalI	GATC	4 cut(s)	68, 81, 282, 468
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	4 cut(s)	66, 79, 280, 466
MboII	GAAGA	6 cut(s)	244, 313, 389, 516, 576, 605
MflI	RGATCY	2 cut(s)	79, 280
MhlI	GDGCHC	2 cut(s)	92, 758
MluCI	AATT	3 cut(s)	161, 361, 575
MlyI	GAGTC	6 cut(s)	134, 257, 470, 561, 677, 775
MnlI	CCTC	8 cut(s)	32, 53, 73, 116, 277, 479, 669, 745
MseI	TTAA	2 cut(s)	432, 699
MspI	CCGG	3 cut(s)	150, 270, 645
MspR9I	CCNGG	1 cut(s)	151
MvnI	CGCG	2 cut(s)	38, 130
MwoI	GCNNNNNNNGC	5 cut(s)	10, 200, 230, 338, 364
NciI	CCSGG	1 cut(s)	151
NdeII	GATC	4 cut(s)	66, 79, 280, 466
NlaIII	CATG	5 cut(s)	13, 31, 259, 386, 423
NlaIV	GGNNCC	1 cut(s)	540
NmeAIII	GCCGAG	1 cut(s)	582
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	3 cut(s)	13, 386, 423
PaeI	GCATGC	1 cut(s)	386
PciSI	GCTCTTC	1 cut(s)	372
PkrI	GCNGC	9 cut(s)	34, 37, 74, 112, 178, 242, 415, 418, 695
PleI	GAGTC	6 cut(s)	133, 257, 469, 561, 677, 775
PpsI	GAGTC	6 cut(s)	133, 257, 469, 561, 677, 775
PpuMI	RGGWCCY	1 cut(s)	538
PsiI	TTATAA	1 cut(s)	641
Psp5II	RGGWCCY	1 cut(s)	538
PspN4I	GGNNCC	1 cut(s)	540
PspPI	GGNCC	1 cut(s)	538
PspPPI	RGGWCCY	1 cut(s)	538
PstNI	CAGNNNCTG	1 cut(s)	784
PsuI	RGATCY	2 cut(s)	79, 280
RsaI	GTAC	1 cut(s)	601
RsaNI	GTAC	1 cut(s)	600
SalI	GTCGAC	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	2 cut(s)	432, 699
SatI	GCNGC	9 cut(s)	33, 36, 73, 111, 177, 241, 414, 417, 694
Sau3AI	GATC	4 cut(s)	66, 79, 280, 466
Sau96I	GGNCC	1 cut(s)	538
SchI	GAGTC	6 cut(s)	134, 257, 470, 561, 677, 775
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	2 cut(s)	92, 758
SfaNI	GCATC	2 cut(s)	265, 715
SgrDI	CGTCGACG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	538
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
SphI	GCATGC	1 cut(s)	386
Sse9I	AATT	3 cut(s)	161, 361, 575
SsiI	CCGC	6 cut(s)	36, 111, 137, 176, 201, 240
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	2 cut(s)	187, 374
TaqI	TCGA	2 cut(s)	65, 189
TasI	AATT	3 cut(s)	161, 361, 575
TauI	GCSGC	4 cut(s)	38, 113, 179, 243
Tru1I	TTAA	2 cut(s)	432, 699
Tru9I	TTAA	2 cut(s)	432, 699
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	5 cut(s)	32, 72, 413, 416, 693
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	244
TspGWI	ACGGA	2 cut(s)	46, 82
VpaK11BI	GGWCC	1 cut(s)	538
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	3 cut(s)	13, 386, 423
XmiI	GTMKAC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.