Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0014865

Physical Location & Seq

Genomic Coordinates Forward (+)

25256672 .. 25257195

Gene Structure 524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023565

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCAATTGCATCCCAGGAAAAAGTCCAAAAGTGTGAGAGCCCTCCGCTTGAGCCAATGCGAAGGTCAATTCGCGCTTCAGACCCGATCGTTCACCGGCGGGATGCTCTACATGCAGAACGACCTCGACATGGCTGCCGCGTCCCTCACCAACAGCTCTGAGACCTCGATCTGCTGCTCAGATCTGGCGTGCTCTATCGTCTCACCCCTCGCCGCTCCAAACATTGAGTCGCGCAAGGCGATGTTCGAAGTCGGGGCTACCAAATTGAAAGAGAAGGCGGCAATCACCGTCGACGCACTCACCGCCGACCCTGAAAACATCTGGGCTGTTTCGGCATACAGCGGCGTCTCAGTCTTCATGTGCGACTCCTCCGGCGATGCAGATCCACTCGGTCGGCGCCTCCTCCATTTGCCGCCTCTTCTGAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

144

Amino Acids

15.38

Weight (kDa)

7.62

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014865)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000544 RLG00000020141 RLG00000023565 RLG00000034947 RLG00000035084
rosa_multiflora	Rmu_sc0003703.1_g000007
rosa_roxburghii	Rroxscaffold_1G00045110 Rroxscaffold_2G00147600 Rroxscaffold_6G00427800 Rroxscaffold_7G00170520
rosa_samantha	Rh1CG069500 Rh2AG247900 Rh3AG182100 Rh3CG205400 Rh5AG474400 Rh7BG245300
rosa_wichuraiana	Rw2G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	396
AccBSI	CCGCTC	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	3 cut(s)	74, 140, 232
AciI	CCGC	8 cut(s)	46, 99, 138, 213, 278, 303, 342, 413
AclWI	GGATC	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	62
AcyI	GRCGYC	2 cut(s)	345, 397
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	1 cut(s)	156
AluI	AGCT	1 cut(s)	156
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	3 cut(s)	155, 205, 352
AlwI	GGATC	1 cut(s)	377
ApeKI	GCWGC	2 cut(s)	134, 174
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AspLEI	GCGC	3 cut(s)	76, 234, 399
AsuHPI	GGTGA	5 cut(s)	85, 139, 195, 277, 292
AsuII	TTCGAA	1 cut(s)	246
BanI	GGYRCC	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	121, 161
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	1 cut(s)	16
BcoDI	GTCTC	3 cut(s)	155, 205, 352
BfoI	RGCGCY	1 cut(s)	400
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	7 cut(s)	135, 138, 175, 213, 279, 343, 413
BlsI	GCNGC	7 cut(s)	136, 139, 176, 214, 280, 344, 414
Bme1390I	CCNGG	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	3 cut(s)	19, 93, 367
BpiI	GAAGAC	1 cut(s)	346
Bpu14I	TTCGAA	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	381
BsaHI	GRCGYC	2 cut(s)	345, 397
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse118I	RCCGGY	1 cut(s)	95
Bse8I	GATNNNNATC	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	2 cut(s)	10, 108
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	3 cut(s)	150, 192, 363
BseRI	GAGGAG	2 cut(s)	358, 392
BseXI	GCAGC	2 cut(s)	121, 161
Bsh1236I	CGCG	3 cut(s)	74, 140, 232
Bsh1285I	CGRYCG	2 cut(s)	89, 394
BshNI	GGYRCC	1 cut(s)	396
BsiEI	CGRYCG	2 cut(s)	89, 394
BsiHKAI	GWGCWC	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	96, 372
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	3 cut(s)	155, 205, 352
BsmBI	CGTCTC	2 cut(s)	205, 352
BsmFI	GGGAC	1 cut(s)	127
Bso31I	GGTCTC	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	43, 194
Bsp143I	GATC	4 cut(s)	86, 168, 181, 382
BspACI	CCGC	8 cut(s)	46, 99, 138, 213, 278, 303, 342, 413
BspCNI	CTCAG	3 cut(s)	151, 191, 362
BspFNI	CGCG	3 cut(s)	74, 140, 232
BspLI	GGNNCC	1 cut(s)	398
BspPI	GGATC	1 cut(s)	377
BspT104I	TTCGAA	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	396
BspTNI	GGTCTC	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	95
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	4 cut(s)	86, 168, 181, 382
BssNI	GRCGYC	2 cut(s)	345, 397
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	423
BstACI	GRCGYC	2 cut(s)	345, 397
BstBI	TTCGAA	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	3 cut(s)	159, 178, 349
BstF5I	GGATG	2 cut(s)	10, 108
BstFNI	CGCG	3 cut(s)	74, 140, 232
BstH2I	RGCGCY	1 cut(s)	400
BstHHI	GCGC	3 cut(s)	76, 234, 399
BstKTI	GATC	4 cut(s)	89, 171, 184, 385
BstMAI	GTCTC	3 cut(s)	155, 205, 352
BstMBI	GATC	4 cut(s)	86, 168, 181, 382
BstMCI	CGRYCG	2 cut(s)	89, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 302, 332
BstNI	CCWGG	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	14
BstUI	CGCG	3 cut(s)	74, 140, 232
BstV1I	GCAGC	2 cut(s)	121, 161
BstV2I	GAAGAC	1 cut(s)	346
BstX2I	RGATCY	2 cut(s)	181, 382
BstYI	RGATCY	2 cut(s)	181, 382
BtgZI	GCGATG	2 cut(s)	254, 390
BtsCI	GGATG	2 cut(s)	10, 108
Cac8I	GCNNGC	1 cut(s)	190
CfoI	GCGC	3 cut(s)	76, 234, 399
Cfr10I	RCCGGY	1 cut(s)	95
CseI	GACGC	3 cut(s)	129, 302, 334
CviAII	CATG	3 cut(s)	112, 130, 358
CviJI	RGCY	6 cut(s)	41, 54, 134, 156, 257, 326
CviKI_1	RGCY	6 cut(s)	41, 54, 134, 156, 257, 326
DdeI	CTNAG	3 cut(s)	159, 178, 349
DinI	GGCGCC	1 cut(s)	398
DpnI	GATC	4 cut(s)	88, 170, 183, 384
DpnII	GATC	4 cut(s)	86, 168, 181, 382
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	14
EcoT38I	GRGCYC	1 cut(s)	43
EgeI	GGCGCC	1 cut(s)	398
EheI	GGCGCC	1 cut(s)	398
Esp3I	CGTCTC	2 cut(s)	205, 352
FaeI	CATG	3 cut(s)	115, 133, 361
FaiI	YATR	5 cut(s)	113, 131, 337, 359, 430
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	3 cut(s)	111, 129, 357
FauI	CCCGC	1 cut(s)	92
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	7 cut(s)	135, 138, 175, 213, 279, 343, 413
FokI	GGATG	1 cut(s)	115
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	7 cut(s)	135, 138, 175, 213, 279, 343, 413
GlaI	GCGC	3 cut(s)	75, 233, 398
GluI	GCNGC	7 cut(s)	135, 138, 175, 213, 279, 343, 413
HaeII	RGCGCY	1 cut(s)	400
HapII	CCGG	2 cut(s)	96, 372
HgaI	GACGC	3 cut(s)	129, 302, 334
HhaI	GCGC	3 cut(s)	76, 234, 399
Hin1I	GRCGYC	2 cut(s)	345, 397
Hin1II	CATG	3 cut(s)	115, 133, 361
Hin6I	GCGC	3 cut(s)	74, 232, 397
HinP1I	GCGC	3 cut(s)	74, 232, 397
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	2 cut(s)	227, 365
HpaII	CCGG	2 cut(s)	96, 372
HphI	GGTGA	5 cut(s)	85, 139, 195, 277, 292
Hpy166II	GTNNAC	2 cut(s)	93, 292
Hpy188I	TCNGA	4 cut(s)	81, 160, 181, 423
Hpy8I	GTNNAC	2 cut(s)	93, 292
Hpy99I	CGWCG	2 cut(s)	293, 296
HpyAV	CCTTC	2 cut(s)	56, 268
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	4 cut(s)	4, 10, 115, 380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 302, 332
HpyF3I	CTNAG	3 cut(s)	159, 178, 349
Hsp92I	GRCGYC	2 cut(s)	345, 397
Hsp92II	CATG	3 cut(s)	115, 133, 361
HspAI	GCGC	3 cut(s)	74, 232, 397
KasI	GGCGCC	1 cut(s)	396
Kzo9I	GATC	4 cut(s)	86, 168, 181, 382
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	6 cut(s)	28, 109, 170, 307, 324, 385
Lsp1109I	GCAGC	2 cut(s)	121, 161
LweI	GCATC	3 cut(s)	19, 93, 367
MalI	GATC	4 cut(s)	88, 170, 183, 384
MbiI	CCGCTC	1 cut(s)	215
MboI	GATC	4 cut(s)	86, 168, 181, 382
MboII	GAAGA	2 cut(s)	346, 410
MfeI	CAATTG	1 cut(s)	5
MflI	RGATCY	2 cut(s)	181, 382
MhlI	GDGCHC	2 cut(s)	43, 194
MluCI	AATT	3 cut(s)	5, 68, 263
Mly113I	GGCGCC	1 cut(s)	397
MlyI	GAGTC	2 cut(s)	236, 359
MnlI	CCTC	9 cut(s)	53, 134, 155, 175, 218, 379, 410, 413, 426
MspA1I	CMGCKG	1 cut(s)	342
MspI	CCGG	2 cut(s)	96, 372
MspR9I	CCNGG	1 cut(s)	16
MunI	CAATTG	1 cut(s)	5
MvaI	CCWGG	1 cut(s)	16
MvnI	CGCG	3 cut(s)	74, 140, 232
MwoI	GCNNNNNNNGC	3 cut(s)	112, 302, 332
NarI	GGCGCC	1 cut(s)	397
NdeII	GATC	4 cut(s)	86, 168, 181, 382
NlaIII	CATG	3 cut(s)	115, 133, 361
NlaIV	GGNNCC	1 cut(s)	398
NspI	RCATGY	1 cut(s)	115
NspV	TTCGAA	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PkrI	GCNGC	7 cut(s)	136, 139, 176, 214, 280, 344, 414
Ple19I	CGATCG	1 cut(s)	89
PleI	GAGTC	2 cut(s)	235, 359
PluTI	GGCGCC	1 cut(s)	400
PpsI	GAGTC	2 cut(s)	235, 359
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	398
PsuI	RGATCY	2 cut(s)	181, 382
PvuI	CGATCG	1 cut(s)	89
SalI	GTCGAC	1 cut(s)	290
SatI	GCNGC	7 cut(s)	135, 138, 175, 213, 279, 343, 413
Sau3AI	GATC	4 cut(s)	86, 168, 181, 382
SchI	GAGTC	2 cut(s)	236, 359
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	2 cut(s)	43, 194
SetI	ASST	4 cut(s)	67, 126, 158, 167
SfaNI	GCATC	3 cut(s)	19, 93, 367
SfoI	GGCGCC	1 cut(s)	398
SfuI	TTCGAA	1 cut(s)	246
SgrAI	CRCCGGYG	1 cut(s)	95
SgrDI	CGTCGACG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	3 cut(s)	5, 68, 263
SsiI	CCGC	8 cut(s)	46, 99, 138, 213, 278, 303, 342, 413
SspDI	GGCGCC	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	289
TaqI	TCGA	4 cut(s)	126, 167, 246, 291
TaqII	GACCGA	1 cut(s)	380
TasI	AATT	3 cut(s)	5, 68, 263
TauI	GCSGC	5 cut(s)	140, 215, 281, 345, 415
TseI	GCWGC	2 cut(s)	134, 174
TspDTI	ATGAA	1 cut(s)	346
XceI	RCATGY	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.