Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014865

Physical Location & Seq

Genomic Coordinates Reverse (-)

60556539 .. 60557717

Gene Structure 1179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035084

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCAGAATGACCTCGACATGTCCGCCGCGTCCGTCACCAACCAGCTCTGCGACCTCGACTTGCTGCTCAGATCTGGCGTCCTCCACCAGTCAAACGCCACCTCCGCCATCTCGCCCCTCGCCGCCGCAAACGATGAGTCGCGCAATCACCGTCGAGGCCTCATCGGCGACCCGGAAAACACCTCCTCTGTTTCGGTCTTCATCGGCGCCTTCTCCGGCGACGTGAAGAACAACGCGTCGCAGACGGAGATCAAGTCGGCTTATAGGAACTTGGCGAAGTTGCACTACCTAGACGCCTCATCGGAGGCCGAATTGGAAGGCCGGGATTTCGTCGAGATTCTGGAGTCAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

118

Amino Acids

12.61

Weight (kDa)

4.63

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014865)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000544 RLG00000020141 RLG00000023565 RLG00000034947 RLG00000035084
rosa_multiflora	Rmu_sc0003703.1_g000007
rosa_roxburghii	Rroxscaffold_1G00045110 Rroxscaffold_2G00147600 Rroxscaffold_6G00427800 Rroxscaffold_7G00170520
rosa_samantha	Rh1CG069500 Rh2AG247900 Rh3AG182100 Rh3CG205400 Rh5AG474400 Rh7BG245300
rosa_wichuraiana	Rw2G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	206
AccII	CGCG	3 cut(s)	29, 142, 236
AciI	CCGC	5 cut(s)	24, 27, 105, 123, 126
AcyI	GRCGYC	3 cut(s)	78, 207, 294
AflIII	ACRYGT	2 cut(s)	18, 234
AjiI	CACGTC	1 cut(s)	223
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
AoxI	GGCC	3 cut(s)	157, 306, 319
ApeKI	GCWGC	1 cut(s)	64
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
AspLEI	GCGC	2 cut(s)	144, 209
AsuC2I	CCSGG	2 cut(s)	173, 323
AsuHPI	GGTGA	2 cut(s)	28, 140
BanI	GGYRCC	1 cut(s)	206
BarI	GAAGNNNNNNTAC	2 cut(s)	269, 301
BbsI	GAAGAC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	51
BccI	CCATC	1 cut(s)	116
BcnI	CCSGG	2 cut(s)	173, 323
BfaI	CTAG	1 cut(s)	290
BfoI	RGCGCY	1 cut(s)	210
BglI	GCCNNNNNGGC	1 cut(s)	165
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	4 cut(s)	27, 65, 123, 126
BlsI	GCNGC	4 cut(s)	28, 66, 124, 127
Bme1390I	CCNGG	2 cut(s)	173, 323
BmgBI	CACGTC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	2 cut(s)	173, 323
BpiI	GAAGAC	1 cut(s)	190
BpuMI	CCSGG	2 cut(s)	173, 323
BsaHI	GRCGYC	3 cut(s)	78, 207, 294
BsaXI	ACNNNNNCTCC	4 cut(s)	86, 116, 239, 269
Bse1I	ACTGG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	51
Bsh1236I	CGCG	3 cut(s)	29, 142, 236
BshFI	GGCC	3 cut(s)	159, 308, 321
BshNI	GGYRCC	1 cut(s)	206
BsiSI	CCGG	3 cut(s)	173, 216, 322
BsnI	GGCC	3 cut(s)	159, 308, 321
Bsp143I	GATC	2 cut(s)	71, 249
BspACI	CCGC	5 cut(s)	24, 27, 105, 123, 126
BspANI	GGCC	3 cut(s)	159, 308, 321
BspCNI	CTCAG	1 cut(s)	81
BspFNI	CGCG	3 cut(s)	29, 142, 236
BspLI	GGNNCC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	88
BssMI	GATC	2 cut(s)	71, 249
BssNI	GRCGYC	3 cut(s)	78, 207, 294
Bst4CI	ACNGT	1 cut(s)	152
BstACI	GRCGYC	3 cut(s)	78, 207, 294
BstDEI	CTNAG	1 cut(s)	68
BstFNI	CGCG	3 cut(s)	29, 142, 236
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	2 cut(s)	144, 209
BstKTI	GATC	2 cut(s)	74, 252
BstMBI	GATC	2 cut(s)	71, 249
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 165
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	2 cut(s)	171, 321
BstUI	CGCG	3 cut(s)	29, 142, 236
BstV1I	GCAGC	1 cut(s)	51
BstV2I	GAAGAC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuRI	GGCC	3 cut(s)	159, 308, 321
BtrI	CACGTC	1 cut(s)	223
CfoI	GCGC	2 cut(s)	144, 209
CseI	GACGC	4 cut(s)	18, 67, 225, 302
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	5 cut(s)	46, 159, 260, 308, 321
CviKI_1	RGCY	5 cut(s)	46, 159, 260, 308, 321
DdeI	CTNAG	1 cut(s)	68
DinI	GGCGCC	1 cut(s)	208
DpnI	GATC	2 cut(s)	73, 251
DpnII	GATC	2 cut(s)	71, 249
EciI	GGCGGA	2 cut(s)	13, 94
Eco147I	AGGCCT	1 cut(s)	159
EgeI	GGCGCC	1 cut(s)	208
EheI	GGCGCC	1 cut(s)	208
FaeI	CATG	1 cut(s)	22
FaiI	YATR	2 cut(s)	20, 264
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	4 cut(s)	27, 65, 123, 126
Fsp4HI	GCNGC	4 cut(s)	27, 65, 123, 126
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	2 cut(s)	143, 208
GluI	GCNGC	4 cut(s)	27, 65, 123, 126
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	159, 308, 321
HapII	CCGG	3 cut(s)	173, 216, 322
HgaI	GACGC	4 cut(s)	18, 67, 225, 302
HhaI	GCGC	2 cut(s)	144, 209
Hin1I	GRCGYC	3 cut(s)	78, 207, 294
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	2 cut(s)	142, 207
HinP1I	GCGC	2 cut(s)	142, 207
HinfI	GANTC	3 cut(s)	137, 337, 344
HpaII	CCGG	3 cut(s)	173, 216, 322
HphI	GGTGA	2 cut(s)	28, 140
Hpy188I	TCNGA	3 cut(s)	71, 304, 353
Hpy188III	TCNNGA	2 cut(s)	334, 341
Hpy99I	CGWCG	4 cut(s)	156, 224, 241, 335
HpyAV	CCTTC	2 cut(s)	220, 311
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	2 cut(s)	4, 283
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 165
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	3 cut(s)	78, 207, 294
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	2 cut(s)	142, 207
KasI	GGCGCC	1 cut(s)	206
Kzo9I	GATC	2 cut(s)	71, 249
LpnPI	CCDG	7 cut(s)	56, 60, 101, 186, 229, 326, 335
Lsp1109I	GCAGC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	73, 251
MboI	GATC	2 cut(s)	71, 249
MboII	GAAGA	2 cut(s)	190, 238
MflI	RGATCY	1 cut(s)	71
MluCI	AATT	1 cut(s)	311
MluI	ACGCGT	1 cut(s)	234
Mly113I	GGCGCC	1 cut(s)	207
MlyI	GAGTC	2 cut(s)	146, 353
MspI	CCGG	3 cut(s)	173, 216, 322
MspR9I	CCNGG	2 cut(s)	173, 323
MvnI	CGCG	3 cut(s)	29, 142, 236
MwoI	GCNNNNNNNGC	2 cut(s)	104, 165
NarI	GGCGCC	1 cut(s)	207
NciI	CCSGG	2 cut(s)	173, 323
NdeII	GATC	2 cut(s)	71, 249
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	159
PciI	ACATGT	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	337
PkrI	GCNGC	4 cut(s)	28, 66, 124, 127
PleI	GAGTC	2 cut(s)	145, 352
PluTI	GGCGCC	1 cut(s)	210
PpsI	GAGTC	2 cut(s)	145, 352
PscI	ACATGT	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	71
SatI	GCNGC	4 cut(s)	27, 65, 123, 126
Sau3AI	GATC	2 cut(s)	71, 249
SchI	GAGTC	2 cut(s)	146, 353
ScrFI	CCNGG	2 cut(s)	173, 323
SetI	ASST	7 cut(s)	15, 48, 57, 104, 185, 225, 291
SfoI	GGCGCC	1 cut(s)	208
Sse9I	AATT	1 cut(s)	311
SseBI	AGGCCT	1 cut(s)	159
SsiI	CCGC	5 cut(s)	24, 27, 105, 123, 126
SspDI	GGCGCC	1 cut(s)	206
SspMI	CTAG	1 cut(s)	290
StuI	AGGCCT	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	171, 321
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	4 cut(s)	15, 57, 154, 333
TaqII	GACCGA	1 cut(s)	184
TasI	AATT	1 cut(s)	311
TauI	GCSGC	3 cut(s)	29, 125, 128
TfiI	GAWTC	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	190
TspGWI	ACGGA	2 cut(s)	22, 260
XceI	RCATGY	1 cut(s)	22
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.