Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014865

Physical Location & Seq

Genomic Coordinates Reverse (-)

61546466 .. 61548074

Gene Structure 1609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020141

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCAGAGTGACCTCGACATGTCCGCCGCGTCCGTCACCAACCAGCTCTGCGACCTCGACTTGCTGCTCAGATCTGGCGTGCTCCACCAGTCAAACGCCAGCTCCGCCATCTCGCCCCTCGCCGCCGCAAACGATGAGTTGCGCAATCACCGTCGAGGCCTCATCGCCGACCTGGAAAACACCTCCTCTGTTTCAGTCTTCATCGACGCCTTCTCCGGCGACGCAGAACCACTCGATCGGCGCCTCCTCCATTTGCCGCTGCTTCTGGAAATATTATGCCATGCCAGACCAAAACCCATTATGCAGGCAATGATGTCATGTACAGAGTCTTGGTTGCAGTCAGAAAAGCATGGCTCGCAGGTGACTGAGGTCAGTCTGCCAAGATATGCTTACCAAGGATCTTATGGACTAATATGGAAAGAGGAGTTCATTGATAGAAAGAAGAAGATACAACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

153

Amino Acids

16.96

Weight (kDa)

5.68

Isoelectric Point (pI)

62.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014865)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000544 RLG00000020141 RLG00000023565 RLG00000034947 RLG00000035084
rosa_multiflora	Rmu_sc0003703.1_g000007
rosa_roxburghii	Rroxscaffold_1G00045110 Rroxscaffold_2G00147600 Rroxscaffold_6G00427800 Rroxscaffold_7G00170520
rosa_samantha	Rh1CG069500 Rh2AG247900 Rh3AG182100 Rh3CG205400 Rh5AG474400 Rh7BG245300
rosa_wichuraiana	Rw2G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	349
Acc16I	TGCGCA	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	349
AccB1I	GGYRCC	1 cut(s)	240
AccII	CGCG	1 cut(s)	29
AciI	CCGC	6 cut(s)	24, 27, 105, 123, 126, 257
AclWI	GGATC	1 cut(s)	406
AcyI	GRCGYC	2 cut(s)	207, 241
AfaI	GTAC	1 cut(s)	322
AflIII	ACRYGT	1 cut(s)	18
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	2 cut(s)	46, 102
AluI	AGCT	2 cut(s)	46, 102
Alw21I	GWGCWC	1 cut(s)	84
AlwI	GGATC	1 cut(s)	406
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	2 cut(s)	64, 259
AspLEI	GCGC	2 cut(s)	144, 243
AsuHPI	GGTGA	3 cut(s)	28, 140, 373
BanI	GGYRCC	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	51, 246
BccI	CCATC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	349
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	6 cut(s)	27, 65, 123, 126, 257, 260
BlsI	GCNGC	6 cut(s)	28, 66, 124, 127, 258, 261
Bme1390I	CCNGG	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	1 cut(s)	173
BoxI	GACNNNNGTC	1 cut(s)	368
BpiI	GAAGAC	1 cut(s)	190
BsaHI	GRCGYC	2 cut(s)	207, 241
BsaJI	CCNNGG	1 cut(s)	394
BsaXI	ACNNNNNCTCC	4 cut(s)	86, 116, 197, 227
Bse1I	ACTGG	1 cut(s)	88
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	394
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	2 cut(s)	82, 357
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	3 cut(s)	175, 236, 437
BseXI	GCAGC	2 cut(s)	51, 246
Bsh1236I	CGCG	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	1 cut(s)	159
BshNI	GGYRCC	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	216
BsnI	GGCC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp1407I	TGTACA	1 cut(s)	320
Bsp143I	GATC	3 cut(s)	71, 235, 398
BspACI	CCGC	6 cut(s)	24, 27, 105, 123, 126, 257
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	2 cut(s)	81, 358
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	242
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	315
BsrGI	TGTACA	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	3 cut(s)	71, 235, 398
BssNI	GRCGYC	2 cut(s)	207, 241
BssT1I	CCWWGG	1 cut(s)	394
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	152
BstACI	GRCGYC	2 cut(s)	207, 241
BstAUI	TGTACA	1 cut(s)	320
BstC8I	GCNNGC	4 cut(s)	80, 100, 306, 356
BstDEI	CTNAG	3 cut(s)	68, 366, 456
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	2 cut(s)	144, 243
BstKTI	GATC	3 cut(s)	74, 238, 401
BstMBI	GATC	3 cut(s)	71, 235, 398
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 355
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	22
BstPAI	GACNNNNGTC	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	171
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	51, 246
BstV2I	GAAGAC	1 cut(s)	190
BstX2I	RGATCY	2 cut(s)	71, 398
BstYI	RGATCY	2 cut(s)	71, 398
BsuRI	GGCC	1 cut(s)	159
BtgZI	GCGATG	1 cut(s)	148
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	4 cut(s)	80, 100, 306, 356
CfoI	GCGC	2 cut(s)	144, 243
CseI	GACGC	3 cut(s)	18, 215, 230
Csp6I	GTAC	1 cut(s)	321
CviAII	CATG	4 cut(s)	19, 281, 318, 350
CviJI	RGCY	4 cut(s)	46, 102, 159, 354
CviKI_1	RGCY	4 cut(s)	46, 102, 159, 354
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	3 cut(s)	68, 366, 456
DinI	GGCGCC	1 cut(s)	242
DpnI	GATC	3 cut(s)	73, 237, 400
DpnII	GATC	3 cut(s)	71, 235, 398
EciI	GGCGGA	2 cut(s)	13, 94
Eco130I	CCWWGG	1 cut(s)	394
Eco147I	AGGCCT	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	394
EgeI	GGCGCC	1 cut(s)	242
EheI	GGCGCC	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	4 cut(s)	22, 284, 321, 353
FaiI	YATR	9 cut(s)	20, 277, 282, 302, 319, 351, 387, 405, 415
FalI	AAGNNNNNCTT	2 cut(s)	373, 405
FatI	CATG	4 cut(s)	18, 280, 317, 349
Fnu4HI	GCNGC	6 cut(s)	27, 65, 123, 126, 257, 260
Fsp4HI	GCNGC	6 cut(s)	27, 65, 123, 126, 257, 260
FspI	TGCGCA	1 cut(s)	143
GlaI	GCGC	2 cut(s)	143, 242
GluI	GCNGC	6 cut(s)	27, 65, 123, 126, 257, 260
HaeII	RGCGCY	1 cut(s)	244
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	1 cut(s)	216
HgaI	GACGC	3 cut(s)	18, 215, 230
HhaI	GCGC	2 cut(s)	144, 243
Hin1I	GRCGYC	2 cut(s)	207, 241
Hin1II	CATG	4 cut(s)	22, 284, 321, 353
Hin6I	GCGC	2 cut(s)	142, 241
HinP1I	GCGC	2 cut(s)	142, 241
HinfI	GANTC	1 cut(s)	326
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	3 cut(s)	28, 140, 373
Hpy188I	TCNGA	2 cut(s)	71, 343
Hpy188III	TCNNGA	1 cut(s)	266
Hpy99I	CGWCG	3 cut(s)	156, 209, 224
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	3 cut(s)	4, 304, 337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 355
HpyF3I	CTNAG	3 cut(s)	68, 366, 456
Hsp92I	GRCGYC	2 cut(s)	207, 241
Hsp92II	CATG	4 cut(s)	22, 284, 321, 353
HspAI	GCGC	2 cut(s)	142, 241
KasI	GGCGCC	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	71, 235, 398
LmnI	GCTCC	2 cut(s)	87, 107
Lsp1109I	GCAGC	2 cut(s)	51, 246
MaeIII	GTNAC	3 cut(s)	8, 34, 361
MalI	GATC	3 cut(s)	73, 237, 400
MboI	GATC	3 cut(s)	71, 235, 398
MboII	GAAGA	3 cut(s)	190, 454, 457
MflI	RGATCY	2 cut(s)	71, 398
MhlI	GDGCHC	1 cut(s)	84
Mly113I	GGCGCC	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	259
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	104, 355
NarI	GGCGCC	1 cut(s)	241
NdeII	GATC	3 cut(s)	71, 235, 398
NlaIII	CATG	4 cut(s)	22, 284, 321, 353
NlaIV	GGNNCC	1 cut(s)	242
NmuCI	GTSAC	3 cut(s)	8, 34, 361
NsbI	TGCGCA	1 cut(s)	143
NspI	RCATGY	1 cut(s)	22
PaqCI	CACCTGC	1 cut(s)	349
PceI	AGGCCT	1 cut(s)	159
PciI	ACATGT	1 cut(s)	18
PkrI	GCNGC	6 cut(s)	28, 66, 124, 127, 258, 261
Ple19I	CGATCG	1 cut(s)	238
PleI	GAGTC	1 cut(s)	334
PluTI	GGCGCC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	334
PscI	ACATGT	1 cut(s)	18
PshAI	GACNNNNGTC	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	242
PsuI	RGATCY	2 cut(s)	71, 398
PvuI	CGATCG	1 cut(s)	238
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
SatI	GCNGC	6 cut(s)	27, 65, 123, 126, 257, 260
Sau3AI	GATC	3 cut(s)	71, 235, 398
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	9 cut(s)	15, 48, 57, 104, 174, 185, 363, 372, 457
SfoI	GGCGCC	1 cut(s)	242
SseBI	AGGCCT	1 cut(s)	159
SsiI	CCGC	6 cut(s)	24, 27, 105, 123, 126, 257
SspDI	GGCGCC	1 cut(s)	240
SspI	AATATT	1 cut(s)	273
StuI	AGGCCT	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	152
TaqI	TCGA	5 cut(s)	15, 57, 154, 204, 234
TatI	WGTACW	1 cut(s)	320
TauI	GCSGC	4 cut(s)	29, 125, 128, 259
TseFI	GTSAC	3 cut(s)	8, 34, 361
TseI	GCWGC	2 cut(s)	64, 259
Tsp45I	GTSAC	3 cut(s)	8, 34, 361
TspDTI	ATGAA	2 cut(s)	190, 418
TspGWI	ACGGA	1 cut(s)	22
XceI	RCATGY	1 cut(s)	22
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.