Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0014865

Physical Location & Seq

Genomic Coordinates Reverse (-)

14362858 .. 14363729

Gene Structure 872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG069500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCTCTATATGCAGAACGACCTCGACATGGCCGCCGCGTCCCTCACCAACAGCTCCGCGACCTCGATCTGCTGCTCATATCTGGCGTGCTCCGTCGTCTCACCCCTCGCCGCTCCAAACATTGAGTCGCGCAAGGCGGTGTTCGAAGCCGGGGCTACCAAATTGAAAGAGAAGGTGGCAATCACCGTCGACGCACTCACCGCCGACCCTGAAAACATCTGGGCTGTTTCGGCATACGGCGGCGTCTTAGTCTTCATGTGCGACTCCTCCGGCGATGCAGATCCACTCGGTCGGCGCCTCTTCCATTTGCCGCCTCTTCTGAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

109

Amino Acids

11.52

Weight (kDa)

4.87

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014865)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000544 RLG00000020141 RLG00000023565 RLG00000034947 RLG00000035084
rosa_multiflora	Rmu_sc0003703.1_g000007
rosa_roxburghii	Rroxscaffold_1G00045110 Rroxscaffold_2G00147600 Rroxscaffold_6G00427800 Rroxscaffold_7G00170520
rosa_samantha	Rh1CG069500 Rh2AG247900 Rh3AG182100 Rh3CG205400 Rh5AG474400 Rh7BG245300
rosa_wichuraiana	Rw2G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	294
AccBSI	CCGCTC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	3 cut(s)	38, 59, 130
AciI	CCGC	8 cut(s)	33, 36, 57, 111, 137, 201, 240, 311
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	30
AcyI	GRCGYC	2 cut(s)	243, 295
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	166
AluBI	AGCT	1 cut(s)	54
AluI	AGCT	1 cut(s)	54
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	72
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AspLEI	GCGC	2 cut(s)	132, 297
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	4 cut(s)	37, 93, 175, 190
AsuII	TTCGAA	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	59
BceAI	ACGGC	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	103
BfoI	RGCGCY	1 cut(s)	298
BisI	GCNGC	6 cut(s)	33, 36, 73, 111, 241, 311
BlsI	GCNGC	6 cut(s)	34, 37, 74, 112, 242, 312
Bme1390I	CCNGG	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	244
Bpu14I	TTCGAA	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	279
BsaHI	GRCGYC	2 cut(s)	243, 295
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse8I	GATNNNNATC	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	150
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	59
Bsh1236I	CGCG	3 cut(s)	38, 59, 130
Bsh1285I	CGRYCG	1 cut(s)	292
BshFI	GGCC	1 cut(s)	32
BshNI	GGYRCC	1 cut(s)	294
BsiEI	CGRYCG	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	150, 270
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	103
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	32
Bsp119I	TTCGAA	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	66, 280
BspACI	CCGC	8 cut(s)	33, 36, 57, 111, 137, 201, 240, 311
BspANI	GGCC	1 cut(s)	32
BspFNI	CGCG	3 cut(s)	38, 59, 130
BspLI	GGNNCC	1 cut(s)	296
BspPI	GGATC	1 cut(s)	275
BspT104I	TTCGAA	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	294
BsrBI	CCGCTC	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	66, 280
BssNI	GRCGYC	2 cut(s)	243, 295
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	2 cut(s)	305, 321
BstACI	GRCGYC	2 cut(s)	243, 295
BstBI	TTCGAA	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	1 cut(s)	247
BstFNI	CGCG	3 cut(s)	38, 59, 130
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	2 cut(s)	132, 297
BstKTI	GATC	2 cut(s)	69, 283
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	2 cut(s)	66, 280
BstMCI	CGRYCG	1 cut(s)	292
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 200, 230
BstSCI	CCNGG	1 cut(s)	149
BstUI	CGCG	3 cut(s)	38, 59, 130
BstV1I	GCAGC	1 cut(s)	59
BstV2I	GAAGAC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	32
BtgZI	GCGATG	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	88
CfoI	GCGC	2 cut(s)	132, 297
CseI	GACGC	3 cut(s)	27, 200, 232
CviAII	CATG	2 cut(s)	28, 256
CviJI	RGCY	5 cut(s)	32, 54, 149, 155, 224
CviKI_1	RGCY	5 cut(s)	32, 54, 149, 155, 224
DdeI	CTNAG	1 cut(s)	247
DinI	GGCGCC	1 cut(s)	296
DpnI	GATC	2 cut(s)	68, 282
DpnII	GATC	2 cut(s)	66, 280
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	305, 321
EarI	CTCTTC	2 cut(s)	305, 321
EgeI	GGCGCC	1 cut(s)	296
EheI	GGCGCC	1 cut(s)	296
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	2 cut(s)	31, 259
FaiI	YATR	7 cut(s)	9, 11, 29, 79, 235, 257, 328
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	2 cut(s)	27, 255
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	6 cut(s)	33, 36, 73, 111, 241, 311
Fsp4HI	GCNGC	6 cut(s)	33, 36, 73, 111, 241, 311
GlaI	GCGC	2 cut(s)	131, 296
GluI	GCNGC	6 cut(s)	33, 36, 73, 111, 241, 311
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	2 cut(s)	150, 270
HgaI	GACGC	3 cut(s)	27, 200, 232
HhaI	GCGC	2 cut(s)	132, 297
Hin1I	GRCGYC	2 cut(s)	243, 295
Hin1II	CATG	2 cut(s)	31, 259
Hin6I	GCGC	2 cut(s)	130, 295
HinP1I	GCGC	2 cut(s)	130, 295
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	2 cut(s)	125, 263
HpaII	CCGG	2 cut(s)	150, 270
HphI	GGTGA	4 cut(s)	37, 93, 175, 190
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	321
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	3 cut(s)	98, 191, 194
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	13, 278
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 200, 230
HpyF3I	CTNAG	1 cut(s)	247
Hsp92I	GRCGYC	2 cut(s)	243, 295
Hsp92II	CATG	2 cut(s)	31, 259
HspAI	GCGC	2 cut(s)	130, 295
KasI	GGCGCC	1 cut(s)	294
Kzo9I	GATC	2 cut(s)	66, 280
LmnI	GCTCC	3 cut(s)	59, 95, 118
LpnPI	CCDG	5 cut(s)	68, 163, 205, 222, 283
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	1 cut(s)	265
MalI	GATC	2 cut(s)	68, 282
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	2 cut(s)	66, 280
MboII	GAAGA	3 cut(s)	244, 292, 308
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	1 cut(s)	161
Mly113I	GGCGCC	1 cut(s)	295
MlyI	GAGTC	2 cut(s)	134, 257
MnlI	CCTC	7 cut(s)	32, 53, 73, 116, 277, 308, 324
MspI	CCGG	2 cut(s)	150, 270
MspR9I	CCNGG	1 cut(s)	151
MvnI	CGCG	3 cut(s)	38, 59, 130
MwoI	GCNNNNNNNGC	3 cut(s)	10, 200, 230
NarI	GGCGCC	1 cut(s)	295
NciI	CCSGG	1 cut(s)	151
NdeII	GATC	2 cut(s)	66, 280
NlaIII	CATG	2 cut(s)	31, 259
NlaIV	GGNNCC	1 cut(s)	296
NspV	TTCGAA	1 cut(s)	144
PkrI	GCNGC	6 cut(s)	34, 37, 74, 112, 242, 312
PleI	GAGTC	2 cut(s)	133, 257
PluTI	GGCGCC	1 cut(s)	298
PpsI	GAGTC	2 cut(s)	133, 257
PspN4I	GGNNCC	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	280
SalI	GTCGAC	1 cut(s)	188
SatI	GCNGC	6 cut(s)	33, 36, 73, 111, 241, 311
Sau3AI	GATC	2 cut(s)	66, 280
SchI	GAGTC	2 cut(s)	134, 257
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	4 cut(s)	24, 56, 65, 177
SfaNI	GCATC	1 cut(s)	265
SfoI	GGCGCC	1 cut(s)	296
SfuI	TTCGAA	1 cut(s)	144
SgrDI	CGTCGACG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	8 cut(s)	33, 36, 57, 111, 137, 201, 240, 311
SspDI	GGCGCC	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	4 cut(s)	24, 65, 144, 189
TaqII	GACCGA	1 cut(s)	278
TasI	AATT	1 cut(s)	161
TauI	GCSGC	5 cut(s)	35, 38, 113, 243, 313
TseI	GCWGC	1 cut(s)	72
TspDTI	ATGAA	1 cut(s)	244
TspGWI	ACGGA	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.