Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014865

Physical Location & Seq

Genomic Coordinates Reverse (-)

85367015 .. 85371221

Gene Structure 4207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGATCGTTTAACCATATTACGAGGAAGGGTGGCCTTGGTTTTGCGAGATGCGGAGTTTGCGATTGATCATGCTCTAATACCATTTGTTTTGGAGATCGATGCTTCAAAAGTGAAGCGGCCACTCACACAGCACACTTCTTCAAACACATCCGTGTTGGGAAGAATCTATGATGATGTGGGCAGCTTGTTGGAATCGTTGACGGGTATCGGTGTGTCCTATGTTAGCCGGAAAGGCAATCTAGTTGCGCATATCTCTGCTAGGGTTTACTCGAAGACTGCCGTTTTCGACAAAATCTCATCGCCATGGAATGTGGTTCTGCAACTAGGTGGACAGGGCATTGGTCCCTCTTTTTTGGTTGGCATGAGGGTGGCCATGGCGAGTTTGGTGTTGGATTGCTTCGCTCTTGGAAGTGATGGGGATTTGATGGTCCGCCTTGACGATGGGGTTGGGAGTTTGATAATAGTGGACAAGGATGATGGCGATCTTGACATCTATACGGCCGAGGGTTGTCTCTCGGTGGATGATGGTGGTGCTTGGTGGCGAGGGCTCTCTCAATTCACTTCCCGGATCATTGTTTGTCTGGTTTTGGAGACTTGTGGAAGAGTTTCTATAATGGTGGAGAGAGCGCTCCGCTTGAGCCAATGCGAATGTCAATTTGCGCTTCGGCCCGATCGTTCACCGGCGGGATGCTCAATATGCGAACGACCTCAACATGGCCGCCGCGTCCCTCACCAACAGCCTCCGCGACCTCGATTTCTTCGCTCGGATCCGGCGTGCTCCGTCGTCTCACCCCTCGCCGCTCCAAACATTGAGTCGCACAAGGCGGTGTTCGGCCGGGCTACCAAATTGAAAGAGAAGGCGGCGATCACCGTCGACGCACTCACCGCCGACCCCGAAAACATCCGGGCTGTTTCGGCATACGCCGGCGTCTCGATCTTCATGTGCGACTCCTCCGGCGATGCGGATCCACTCGGTCGGCGCCTCCTCCATTTGCCGCCTCTTCGAAAATATGATGTCGTGTTGGAGATTCTTGCTCACCGAATCTATGACTACTCATTCGTCGGCGTCTCTTCTTGTTGTGGAGGGATCGGTGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

367

Amino Acids

39.67

Weight (kDa)

7.05

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014865)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000544 RLG00000020141 RLG00000023565 RLG00000034947 RLG00000035084
rosa_multiflora	Rmu_sc0003703.1_g000007
rosa_roxburghii	Rroxscaffold_1G00045110 Rroxscaffold_2G00147600 Rroxscaffold_6G00427800 Rroxscaffold_7G00170520
rosa_samantha	Rh1CG069500 Rh2AG247900 Rh3AG182100 Rh3CG205400 Rh5AG474400 Rh7BG245300
rosa_wichuraiana	Rw2G046200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	981
AccBSI	CCGCTC	1 cut(s)	803
AccI	GTMKAC	1 cut(s)	876
AccII	CGCG	2 cut(s)	726, 748
AclWI	GGATC	7 cut(s)	12, 578, 764, 777, 962, 975, 1097
AcoI	YGGCCR	5 cut(s)	119, 372, 501, 718, 835
AcyI	GRCGYC	3 cut(s)	930, 982, 1068
AfeI	AGCGCT	1 cut(s)	630
AfiI	CCNNNNNNNGG	1 cut(s)	716
AgsI	TTSAA	3 cut(s)	108, 144, 853
AleI	CACNNNNGTG	1 cut(s)	152
AluBI	AGCT	1 cut(s)	186
AluI	AGCT	1 cut(s)	186
Alw21I	GWGCWC	1 cut(s)	782
Alw26I	GTCTC	5 cut(s)	518, 587, 793, 937, 1075
AlwI	GGATC	7 cut(s)	12, 578, 764, 777, 962, 975, 1097
Aor51HI	AGCGCT	1 cut(s)	630
AoxI	GGCC	7 cut(s)	33, 119, 372, 501, 668, 718, 835
ApeKI	GCWGC	1 cut(s)	183
ArsI	GACNNNNNNTTYG	4 cut(s)	800, 832, 1043, 1075
Asp700I	GAANNNNTTC	1 cut(s)	607
AspLEI	GCGC	4 cut(s)	250, 631, 664, 984
AspS9I	GGNCC	3 cut(s)	344, 430, 669
AsuC2I	CCSGG	3 cut(s)	568, 839, 908
AsuHPI	GGTGA	6 cut(s)	672, 725, 783, 862, 877, 1031
AsuII	TTCGAA	1 cut(s)	1006
AvaII	GGWCC	2 cut(s)	344, 430
BalI	TGGCCA	1 cut(s)	374
BamHI	GGATCC	2 cut(s)	769, 967
BanI	GGYRCC	1 cut(s)	981
BanII	GRGCYC	1 cut(s)	552
BbsI	GAAGAC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	782
BbvI	GCAGC	1 cut(s)	195
BccI	CCATC	5 cut(s)	410, 421, 437, 473, 521
BceAI	ACGGC	2 cut(s)	266, 516
BclI	TGATCA	1 cut(s)	67
BcnI	CCSGG	3 cut(s)	568, 839, 908
BcoDI	GTCTC	5 cut(s)	518, 587, 793, 937, 1075
BfaI	CTAG	3 cut(s)	242, 261, 326
BfoI	RGCGCY	2 cut(s)	632, 985
BglI	GCCNNNNNGGC	1 cut(s)	234
BisI	GCNGC	7 cut(s)	119, 184, 721, 724, 801, 864, 998
BlsI	GCNGC	7 cut(s)	120, 185, 722, 725, 802, 865, 999
Bme1390I	CCNGG	3 cut(s)	568, 839, 908
Bme18I	GGWCC	2 cut(s)	344, 430
BmgT120I	GGNCC	3 cut(s)	344, 430, 669
BmiI	GGNNCC	4 cut(s)	346, 771, 969, 983
BmrFI	CCNGG	3 cut(s)	568, 839, 908
BmsI	GCATC	4 cut(s)	40, 91, 680, 952
BpiI	GAAGAC	1 cut(s)	281
Bpu14I	TTCGAA	1 cut(s)	1006
BpuEI	CTTGAG	1 cut(s)	658
BpuMI	CCSGG	3 cut(s)	568, 839, 908
Bsa29I	ATCGAT	1 cut(s)	99
BsaBI	GATNNNNATC	2 cut(s)	483, 966
BsaHI	GRCGYC	3 cut(s)	930, 982, 1068
BsaJI	CCNNGG	4 cut(s)	36, 305, 375, 504
Bsc4I	CCNNNNNNNGG	1 cut(s)	716
Bse118I	RCCGGY	2 cut(s)	682, 926
Bse8I	GATNNNNATC	2 cut(s)	483, 966
BseCI	ATCGAT	1 cut(s)	99
BseDI	CCNNGG	4 cut(s)	36, 305, 375, 504
BseGI	GGATG	5 cut(s)	149, 481, 529, 695, 903
BseJI	GATNNNNATC	2 cut(s)	483, 966
BseLI	CCNNNNNNNGG	1 cut(s)	716
BseRI	GAGGAG	2 cut(s)	943, 977
BseX3I	CGGCCG	2 cut(s)	501, 835
BseXI	GCAGC	1 cut(s)	195
Bsh1236I	CGCG	2 cut(s)	726, 748
Bsh1285I	CGRYCG	4 cut(s)	504, 676, 838, 979
BshFI	GGCC	7 cut(s)	35, 121, 374, 503, 670, 720, 837
BshNI	GGYRCC	1 cut(s)	981
BshVI	ATCGAT	1 cut(s)	99
BsiEI	CGRYCG	4 cut(s)	504, 676, 838, 979
BsiHKAI	GWGCWC	1 cut(s)	782
BsiSI	CCGG	8 cut(s)	229, 568, 683, 773, 838, 907, 927, 957
BslFI	GGGAC	2 cut(s)	330, 713
BslI	CCNNNNNNNGG	1 cut(s)	716
BsmAI	GTCTC	5 cut(s)	518, 587, 793, 937, 1075
BsmBI	CGTCTC	3 cut(s)	793, 937, 1075
BsmFI	GGGAC	2 cut(s)	330, 713
BsnI	GGCC	7 cut(s)	35, 121, 374, 503, 670, 720, 837
Bsp119I	TTCGAA	1 cut(s)	1006
Bsp1286I	GDGCHC	2 cut(s)	552, 782
Bsp19I	CCATGG	2 cut(s)	305, 375
BspANI	GGCC	7 cut(s)	35, 121, 374, 503, 670, 720, 837
BspDI	ATCGAT	1 cut(s)	99
BspFNI	CGCG	2 cut(s)	726, 748
BspLI	GGNNCC	4 cut(s)	346, 771, 969, 983
BspPI	GGATC	7 cut(s)	12, 578, 764, 777, 962, 975, 1097
BspT104I	TTCGAA	1 cut(s)	1006
BspT107I	GGYRCC	1 cut(s)	981
BsrBI	CCGCTC	1 cut(s)	803
BsrFI	RCCGGY	2 cut(s)	682, 926
BssAI	RCCGGY	2 cut(s)	682, 926
BssECI	CCNNGG	4 cut(s)	36, 305, 375, 504
BssNI	GRCGYC	3 cut(s)	930, 982, 1068
BssT1I	CCWWGG	3 cut(s)	36, 305, 375
Bst4CI	ACNGT	1 cut(s)	874
Bst6I	CTCTTC	3 cut(s)	598, 1008, 1078
BstACI	GRCGYC	3 cut(s)	930, 982, 1068
BstBI	TTCGAA	1 cut(s)	1006
BstC8I	GCNNGC	2 cut(s)	778, 928
BstDSI	CCRYGG	2 cut(s)	305, 375
BstF5I	GGATG	5 cut(s)	149, 481, 529, 695, 903
BstFNI	CGCG	2 cut(s)	726, 748
BstH2I	RGCGCY	2 cut(s)	632, 985
BstHHI	GCGC	4 cut(s)	250, 631, 664, 984
BstMAI	GTCTC	5 cut(s)	518, 587, 793, 937, 1075
BstMCI	CGRYCG	4 cut(s)	504, 676, 838, 979
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 234, 699, 887, 917
BstSCI	CCNGG	3 cut(s)	566, 837, 906
BstUI	CGCG	2 cut(s)	726, 748
BstV1I	GCAGC	1 cut(s)	195
BstV2I	GAAGAC	1 cut(s)	281
BstX2I	RGATCY	2 cut(s)	769, 967
BstYI	RGATCY	2 cut(s)	769, 967
BstZI	CGGCCG	2 cut(s)	501, 835
Bsu15I	ATCGAT	1 cut(s)	99
BsuRI	GGCC	7 cut(s)	35, 121, 374, 503, 670, 720, 837
BsuTUI	ATCGAT	1 cut(s)	99
BtgI	CCRYGG	2 cut(s)	305, 375
BtgZI	GCGATG	2 cut(s)	285, 975
BtsCI	GGATG	5 cut(s)	149, 481, 529, 695, 903
Cac8I	GCNNGC	2 cut(s)	778, 928
CfoI	GCGC	4 cut(s)	250, 631, 664, 984
Cfr10I	RCCGGY	2 cut(s)	682, 926
Cfr13I	GGNCC	3 cut(s)	344, 430, 669
ClaI	ATCGAT	1 cut(s)	99
CseI	GACGC	4 cut(s)	715, 887, 919, 1057
CviAII	CATG	6 cut(s)	71, 306, 364, 376, 716, 943
DinI	GGCGCC	1 cut(s)	983
EaeI	YGGCCR	5 cut(s)	119, 372, 501, 718, 835
EagI	CGGCCG	2 cut(s)	501, 835
Eam1104I	CTCTTC	3 cut(s)	598, 1008, 1078
EarI	CTCTTC	3 cut(s)	598, 1008, 1078
EciI	GGCGGA	1 cut(s)	422
EclXI	CGGCCG	2 cut(s)	501, 835
Eco130I	CCWWGG	3 cut(s)	36, 305, 375
Eco24I	GRGCYC	1 cut(s)	552
Eco47I	GGWCC	2 cut(s)	344, 430
Eco47III	AGCGCT	1 cut(s)	630
Eco52I	CGGCCG	2 cut(s)	501, 835
EcoT14I	CCWWGG	3 cut(s)	36, 305, 375
EcoT38I	GRGCYC	1 cut(s)	552
EgeI	GGCGCC	1 cut(s)	983
EheI	GGCGCC	1 cut(s)	983
ErhI	CCWWGG	3 cut(s)	36, 305, 375
Esp3I	CGTCTC	3 cut(s)	793, 937, 1075
FaeI	CATG	6 cut(s)	74, 309, 367, 379, 719, 946
FaqI	GGGAC	2 cut(s)	330, 713
FatI	CATG	6 cut(s)	70, 305, 363, 375, 715, 942
FauI	CCCGC	1 cut(s)	679
FbaI	TGATCA	1 cut(s)	67
FblI	GTMKAC	1 cut(s)	876
Fnu4HI	GCNGC	7 cut(s)	119, 184, 721, 724, 801, 864, 998
FokI	GGATG	5 cut(s)	136, 488, 536, 702, 890
FriOI	GRGCYC	1 cut(s)	552
Fsp4HI	GCNGC	7 cut(s)	119, 184, 721, 724, 801, 864, 998
FspBI	CTAG	3 cut(s)	242, 261, 326
FspI	TGCGCA	1 cut(s)	249
GlaI	GCGC	4 cut(s)	249, 630, 663, 983
GluI	GCNGC	7 cut(s)	119, 184, 721, 724, 801, 864, 998
HaeII	RGCGCY	2 cut(s)	632, 985
HaeIII	GGCC	7 cut(s)	35, 121, 374, 503, 670, 720, 837
HapII	CCGG	8 cut(s)	229, 568, 683, 773, 838, 907, 927, 957
HgaI	GACGC	4 cut(s)	715, 887, 919, 1057
HhaI	GCGC	4 cut(s)	250, 631, 664, 984
Hin1I	GRCGYC	3 cut(s)	930, 982, 1068
Hin1II	CATG	6 cut(s)	74, 309, 367, 379, 719, 946
Hin6I	GCGC	4 cut(s)	248, 629, 662, 982
HinP1I	GCGC	4 cut(s)	248, 629, 662, 982
HincII	GTYRAC	2 cut(s)	201, 877
HindII	GTYRAC	2 cut(s)	201, 877
HinfI	GANTC	6 cut(s)	165, 194, 815, 950, 1030, 1044
HpaII	CCGG	8 cut(s)	229, 568, 683, 773, 838, 907, 927, 957
HphI	GGTGA	6 cut(s)	672, 725, 783, 862, 877, 1031
Hpy166II	GTNNAC	6 cut(s)	201, 268, 332, 469, 680, 877
Hpy188I	TCNGA	1 cut(s)	769
Hpy188III	TCNNGA	2 cut(s)	488, 934
Hpy8I	GTNNAC	6 cut(s)	201, 268, 332, 469, 680, 877
Hpy99I	CGWCG	4 cut(s)	788, 878, 881, 1067
HpyAV	CCTTC	2 cut(s)	21, 853
HpyCH4III	ACNGT	1 cut(s)	874
HpyCH4V	TGCA	1 cut(s)	322
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 234, 699, 887, 917
Hsp92I	GRCGYC	3 cut(s)	930, 982, 1068
Hsp92II	CATG	6 cut(s)	74, 309, 367, 379, 719, 946
HspAI	GCGC	4 cut(s)	248, 629, 662, 982
KasI	GGCGCC	1 cut(s)	981
KroI	GCCGGC	1 cut(s)	926
KroNI	GCCGGC	1 cut(s)	928
Ksp22I	TGATCA	1 cut(s)	67
LmnI	GCTCC	3 cut(s)	636, 785, 808
Lsp1109I	GCAGC	1 cut(s)	195
LweI	GCATC	4 cut(s)	40, 91, 680, 952
MaeI	CTAG	3 cut(s)	242, 261, 326
MbiI	CCGCTC	1 cut(s)	803
MboII	GAAGA	8 cut(s)	132, 174, 286, 615, 752, 931, 995, 1065
MflI	RGATCY	2 cut(s)	769, 967
MhlI	GDGCHC	2 cut(s)	552, 782
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	3 cut(s)	557, 656, 848
MluNI	TGGCCA	1 cut(s)	374
Mly113I	GGCGCC	1 cut(s)	982
MlyI	GAGTC	2 cut(s)	824, 944
MmeI	TCCRAC	3 cut(s)	171, 372, 1005
Mox20I	TGGCCA	1 cut(s)	374
MreI	CGCCGGCG	1 cut(s)	926
MroNI	GCCGGC	1 cut(s)	926
MroXI	GAANNNNTTC	1 cut(s)	607
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	1 cut(s)	11
MslI	CAYNNNNRTG	3 cut(s)	152, 304, 368
Msp20I	TGGCCA	1 cut(s)	374
MspI	CCGG	8 cut(s)	229, 568, 683, 773, 838, 907, 927, 957
MspR9I	CCNGG	3 cut(s)	568, 839, 908
MvnI	CGCG	2 cut(s)	726, 748
MwoI	GCNNNNNNNGC	5 cut(s)	59, 234, 699, 887, 917
NaeI	GCCGGC	1 cut(s)	928
NarI	GGCGCC	1 cut(s)	982
NciI	CCSGG	3 cut(s)	568, 839, 908
NcoI	CCATGG	2 cut(s)	305, 375
NgoMIV	GCCGGC	1 cut(s)	926
NlaIII	CATG	6 cut(s)	74, 309, 367, 379, 719, 946
NlaIV	GGNNCC	4 cut(s)	346, 771, 969, 983
NmeAIII	GCCGAG	1 cut(s)	529
NsbI	TGCGCA	1 cut(s)	249
NspV	TTCGAA	1 cut(s)	1006
OliI	CACNNNNGTG	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	2 cut(s)	673, 773
PdiI	GCCGGC	1 cut(s)	928
PdmI	GAANNNNTTC	1 cut(s)	607
PfeI	GAWTC	4 cut(s)	165, 194, 1030, 1044
PfoI	TCCNGGA	1 cut(s)	566
PkrI	GCNGC	7 cut(s)	120, 185, 722, 725, 802, 865, 999
Ple19I	CGATCG	1 cut(s)	676
PleI	GAGTC	2 cut(s)	823, 944
PluTI	GGCGCC	1 cut(s)	985
PpsI	GAGTC	2 cut(s)	823, 944
PspN4I	GGNNCC	4 cut(s)	346, 771, 969, 983
PspPI	GGNCC	3 cut(s)	344, 430, 669
PsuI	RGATCY	2 cut(s)	769, 967
PvuI	CGATCG	1 cut(s)	676
RseI	CAYNNNNRTG	3 cut(s)	152, 304, 368
SalI	GTCGAC	1 cut(s)	875
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	7 cut(s)	119, 184, 721, 724, 801, 864, 998
Sau96I	GGNCC	3 cut(s)	344, 430, 669
SchI	GAGTC	2 cut(s)	824, 944
ScrFI	CCNGG	3 cut(s)	568, 839, 908
SduI	GDGCHC	2 cut(s)	552, 782
SetI	ASST	4 cut(s)	188, 331, 712, 754
SfaNI	GCATC	4 cut(s)	40, 91, 680, 952
SfoI	GGCGCC	1 cut(s)	983
SfuI	TTCGAA	1 cut(s)	1006
SgrAI	CRCCGGYG	2 cut(s)	682, 926
SgrDI	CGTCGACG	1 cut(s)	875
SinI	GGWCC	2 cut(s)	344, 430
SmiMI	CAYNNNNRTG	3 cut(s)	152, 304, 368
SmlI	CTYRAG	1 cut(s)	637
SmoI	CTYRAG	1 cut(s)	637
Sse9I	AATT	3 cut(s)	557, 656, 848
SspDI	GGCGCC	1 cut(s)	981
SspMI	CTAG	3 cut(s)	242, 261, 326
StyD4I	CCNGG	3 cut(s)	566, 837, 906
StyI	CCWWGG	3 cut(s)	36, 305, 375
TaaI	ACNGT	1 cut(s)	874
TaqI	TCGA	7 cut(s)	99, 272, 288, 754, 876, 935, 1006
TaqII	GACCGA	1 cut(s)	965
TasI	AATT	3 cut(s)	557, 656, 848
TauI	GCSGC	6 cut(s)	121, 723, 726, 803, 866, 1000
TfiI	GAWTC	4 cut(s)	165, 194, 1030, 1044
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TseI	GCWGC	1 cut(s)	183
TspDTI	ATGAA	1 cut(s)	931
TspGWI	ACGGA	2 cut(s)	142, 772
VpaK11BI	GGWCC	2 cut(s)	344, 430
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	876
XmnI	GAANNNNTTC	1 cut(s)	607
XspI	CTAG	3 cut(s)	242, 261, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.