Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009725

Physical Location & Seq

Genomic Coordinates Reverse (-)

51281687 .. 51284045

Gene Structure 2359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003653

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAAAGCTTATCTTATGCTGGCTGCAGTTGTAGCCATTCTGCAATTGCTTAACCACATAAGCCTATGTACTGCAACTGGAACTTTTTTGGGGGAAACAAAAACTGACTTCATAAAGACATCATGCAATGCCACAAGCGTGGCTCTTGAATTTGCCAAACAAACTTATGCAACAGTGAAAAAGTTTTCAACATTTCAAGGTTTAGGTCCACTAGTGAGACCAGCAATCTGTGATTGCGGGAAGCAACTTGATATCGCTGTGGAGGAGCTCCAGAATTCTAAAGATCAACTAACGTTAAAGGGGTTGTTAGGTCGCGATCGAGAAGCCATTGCTGGAGGCGACGACGGAGGACTTTGTGGACTGGCAGGTGGTTGGCGAAGGGGAGTTGGTGATGGAGGCCAGCGAGGCGATGCTGAGGATTGGGATTGGTTTATTAATCTCAATGCTTTCGGATTGATTATTTTCGGGGATCTAAAGGATGTGCAAGGTGGTGTTTGCGGCAATGGTGATGATATAGGTGGTGACCGGGAACTCACCTTAATCCCACCACCATCTCCAGAATTGGGATTTGTGTTGTATTGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

196

Amino Acids

20.78

Weight (kDa)

4.68

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009725)

Species	Orthologous Gene IDs
malus_domestica	MD04G1081600.v1.1
rosa_chinensis	RchiOBHm_Chr7g0232681 RchiOBHm_Chr7g0235051
rosa_laevigata	RLG00000001317 RLG00000003653
rosa_multiflora	Rmu_sc0002239.1_g000003 Rmu_sc0002239.1_g000004
rosa_roxburghii	Rroxscaffold_3G00226350 Rroxscaffold_3G00228030 Rroxscaffold_3G00233430
rosa_rugosa	Rorug07G0065400 Rorug07G0287300
rosa_samantha	Rh7AG192700 Rh7AG430300 Rh7BG414700 Rh7CG203900 Rh7CG449200 Rh7CG463200 Rh7DG431800 Rh7DG431900
rosa_wichuraiana	Rw7G028020 Rw7G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	356
Acc36I	ACCTGC	1 cut(s)	356
AccII	CGCG	1 cut(s)	315
AciI	CCGC	2 cut(s)	237, 498
AclI	AACGTT	1 cut(s)	293
AclWI	GGATC	1 cut(s)	477
AcsI	RAATTY	2 cut(s)	149, 274
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	563
AgsI	TTSAA	3 cut(s)	149, 189, 197
AhlI	ACTAGT	1 cut(s)	211
AleI	CACNNNNGTG	1 cut(s)	137
AluBI	AGCT	2 cut(s)	8, 268
AluI	AGCT	2 cut(s)	8, 268
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	477
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	2 cut(s)	149, 274
AseI	ATTAAT	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	1 cut(s)	527
AsuHPI	GGTGA	4 cut(s)	401, 518, 526, 533
AvaII	GGWCC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	270
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	2 cut(s)	386, 559
BcnI	CCSGG	1 cut(s)	527
BcoDI	GTCTC	1 cut(s)	211
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	24
BfuAI	ACCTGC	1 cut(s)	356
BglI	GCCNNNNNGGC	1 cut(s)	405
BisI	GCNGC	2 cut(s)	24, 499
BlsI	GCNGC	2 cut(s)	25, 500
Bme1390I	CCNGG	1 cut(s)	527
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	527
BmsI	GCATC	1 cut(s)	400
BpmI	CTGGAG	3 cut(s)	254, 354, 540
Bpu10I	CCTNAGC	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	527
BsaI	GGTCTC	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	563
Bse1I	ACTGG	2 cut(s)	82, 366
Bse3DI	GCAATG	3 cut(s)	133, 327, 508
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	1 cut(s)	563
BseMI	GCAATG	3 cut(s)	133, 327, 508
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	2 cut(s)	82, 366
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	315
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	1 cut(s)	399
BsiEI	CGRYCG	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	526
BslI	CCNNNNNNNGG	1 cut(s)	563
BsmAI	GTCTC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	399
Bso31I	GGTCTC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	3 cut(s)	283, 316, 469
Bsp68I	TCGCGA	1 cut(s)	315
BspACI	CCGC	2 cut(s)	237, 498
BspANI	GGCC	1 cut(s)	399
BspCNI	CTCAG	1 cut(s)	406
BspFNI	CGCG	1 cut(s)	315
BspMAI	CTGCAG	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	356
BspPI	GGATC	1 cut(s)	477
BspTNI	GGTCTC	1 cut(s)	211
BsrDI	GCAATG	3 cut(s)	133, 327, 508
BsrI	ACTGG	2 cut(s)	82, 366
BssMI	GATC	3 cut(s)	283, 316, 469
Bst4CI	ACNGT	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	21, 401
BstDEI	CTNAG	1 cut(s)	414
BstEII	GGTNACC	1 cut(s)	521
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	1 cut(s)	315
BstKTI	GATC	3 cut(s)	286, 319, 472
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	3 cut(s)	283, 316, 469
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 405
BstPI	GGTNACC	1 cut(s)	521
BstSCI	CCNGG	1 cut(s)	525
BstSFI	CTRYAG	1 cut(s)	24
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	469
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	399
BtgZI	GCGATG	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	180
BtuMI	TCGCGA	1 cut(s)	315
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	21, 401
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	1 cut(s)	123
CviJI	RGCY	8 cut(s)	8, 23, 35, 63, 143, 268, 326, 399
CviKI_1	RGCY	8 cut(s)	8, 23, 35, 63, 143, 268, 326, 399
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	3 cut(s)	285, 318, 471
DpnII	GATC	3 cut(s)	283, 316, 469
Ecl136II	GAGCTC	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	270
Eco31I	GGTCTC	1 cut(s)	211
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	268
Eco91I	GGTNACC	1 cut(s)	521
EcoICRI	GAGCTC	1 cut(s)	268
EcoO65I	GGTNACC	1 cut(s)	521
EcoRI	GAATTC	1 cut(s)	274
EcoRV	GATATC	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	270
FaeI	CATG	1 cut(s)	126
FaiI	YATR	7 cut(s)	17, 59, 67, 113, 124, 168, 515
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	1 cut(s)	122
FauI	CCCGC	1 cut(s)	230
Fnu4HI	GCNGC	2 cut(s)	24, 499
FokI	GGATG	1 cut(s)	491
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	2 cut(s)	24, 499
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	2 cut(s)	24, 499
GsuI	CTGGAG	3 cut(s)	254, 354, 540
HaeIII	GGCC	1 cut(s)	399
HapII	CCGG	1 cut(s)	526
Hin1II	CATG	1 cut(s)	126
HindIII	AAGCTT	1 cut(s)	6
HpaII	CCGG	1 cut(s)	526
HphI	GGTGA	4 cut(s)	401, 518, 526, 533
Hpy166II	GTNNAC	2 cut(s)	209, 359
Hpy188I	TCNGA	1 cut(s)	452
Hpy188III	TCNNGA	5 cut(s)	146, 271, 314, 320, 557
Hpy8I	GTNNAC	2 cut(s)	209, 359
Hpy99I	CGWCG	2 cut(s)	344, 347
HpyAV	CCTTC	1 cut(s)	372
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	6 cut(s)	26, 43, 74, 126, 170, 484
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 405
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	1 cut(s)	126
Kzo9I	GATC	3 cut(s)	283, 316, 469
LmnI	GCTCC	2 cut(s)	265, 273
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	3 cut(s)	285, 318, 471
MboI	GATC	3 cut(s)	283, 316, 469
MfeI	CAATTG	1 cut(s)	44
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	4 cut(s)	44, 149, 274, 560
MnlI	CCTC	6 cut(s)	256, 329, 341, 389, 398, 409
MseI	TTAA	4 cut(s)	51, 296, 435, 539
MslI	CAYNNNNRTG	1 cut(s)	137
MspI	CCGG	1 cut(s)	526
MspR9I	CCNGG	1 cut(s)	527
MunI	CAATTG	1 cut(s)	44
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	2 cut(s)	32, 405
NciI	CCSGG	1 cut(s)	527
NdeII	GATC	3 cut(s)	283, 316, 469
NlaIII	CATG	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	521
NruI	TCGCGA	1 cut(s)	315
OliI	CACNNNNGTG	1 cut(s)	137
PaqCI	CACCTGC	1 cut(s)	356
PkrI	GCNGC	2 cut(s)	25, 500
Ple19I	CGATCG	1 cut(s)	319
PshBI	ATTAAT	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	270
Psp1406I	AACGTT	1 cut(s)	293
PspEI	GGTNACC	1 cut(s)	521
PspPI	GGNCC	1 cut(s)	206
PstI	CTGCAG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	469
PvuI	CGATCG	1 cut(s)	319
RruI	TCGCGA	1 cut(s)	315
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
RseI	CAYNNNNRTG	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	270
SaqAI	TTAA	4 cut(s)	51, 296, 435, 539
SatI	GCNGC	2 cut(s)	24, 499
Sau3AI	GATC	3 cut(s)	283, 316, 469
Sau96I	GGNCC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	527
SduI	GDGCHC	1 cut(s)	270
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	137
SpeI	ACTAGT	1 cut(s)	211
Sse9I	AATT	4 cut(s)	44, 149, 274, 560
SsiI	CCGC	2 cut(s)	237, 498
SspMI	CTAG	1 cut(s)	212
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	525
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	1 cut(s)	319
TasI	AATT	4 cut(s)	44, 149, 274, 560
TatI	WGTACW	1 cut(s)	68
TauI	GCSGC	1 cut(s)	501
Tru1I	TTAA	4 cut(s)	51, 296, 435, 539
Tru9I	TTAA	4 cut(s)	51, 296, 435, 539
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	2 cut(s)	17, 100
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	206
VspI	ATTAAT	1 cut(s)	435
XapI	RAATTY	2 cut(s)	149, 274
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.