Rorug07G0065400

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000490
Physical Location & Seq
Reverse (-)
4964101 .. 4965886
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0065400.1

Sequence Viewer

Length: 1311 bp
ATGACGGAATTAATCGTAGTCATGGAAGATGATGGCAGCAGAAATATTGATGTTGAAGCATTGGAACAGAGCATGAAAGCGAAGCTCCGCAGTGATTCACCCTTGTCTGCCGAGTGTTGCATTTTCAGAGTTCCTGAATTACTTCGGAGACATAAACCAGAGGCATATGCACCAGATATTGTCTCAATCGGACCCTTTCATCACCGTAACAGCAAACTTTTCGCAACCATGAAAGATGTGAAACACTGGTATTTAAATTCTCTACTCTTAAGAAAGAAGATGACTTTAAAAGCTTTGATTCAAGGTATTGATAATATTACTGTGTTCGAGAAACGTGCTCGTGATTATTATGCAGAATCAATTGATCTTGACCAGAATCAATTCATAGAAATTTTGATAATTGATGGCTGCTTCTTATTGGAGCTATTTCAGAGAAGTTCCTATAAGTTGCGAGATTGTAAGGTTAATGATCCCGTATTAAACATGGGTTGCATGATCCAGTATCTTTGCCATGATCTTCTGCTACTAGAAAATCAATTGCCTTGGTTTGTTCTCGAGTCTCTATATAACCTTATCTGCTCTGCTACAAGCAAGTCTCCCTCACTAGGCTTGTGCTCAACTTCTTCAGCAGACTATCGTCAATGCATGGGTCATAATTGCAAGGGTTATCCCAATCACAGTCATGATGATGAAATTCTACACATACTTGATCTGATAAGAAGTGCTATTGTTGTTCCATTCAACAAATTTGAATCAATCGAACACGAGTCTGCACTGCCCCATGCAACTGCTCTCTTGGAGGCAGGGATTGAATTCAGAAGAAGCTCAGTTGATGGCTTATTGAGTATTGATTTCAAAGATGGAGTTCTCACAATTCCACAGCTTGCAATTGCAGAGATGACTGAACCTTTGTTCAGGAACCTCATTGCCTTTGAGCAGTGCTATCACGGTCGCGACCATAAAGTTTCCTCTTATGCACTTTTAATGGATAACCTCATTGCTTCCAGCAAGGATGTTGTTTTTCTTTGTAAGAAAGAAATAATCAATAATTGGTTGAGTGCTGAAGATGCTTCCCAGTTGTTCAGTGCGCTTCATAGTGACACACTGATCACTTTTTGCTATGGCGGGCTCTGTGCTGCAGTGAACAAATATTACAAAGTTAGATGGAACAAGTGGCTAGCCCGGTTGAAGCGTGATTACTTATCTAATCCATGGAAAATCACTTCTTTGGTTGCAGCCTTTATCCTTCTGGTTCTCACCCTATTGCAGACAACATATACCATCCAGCAATACTATTCTCCTCCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

436

Amino Acids

49.88

Weight (kDa)

6.28

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 41 - 419 3.2e-106 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 954
AciI CCGC 2 cut(s) 88, 1125
AclWI GGATC 2 cut(s) 464, 490
AcsI RAATTY 5 cut(s) 256, 390, 693, 746, 812
AcuI CTGAAG 2 cut(s) 609, 1083
AfiI CCNNNNNNNGG 1 cut(s) 605
AflII CTTAAG 1 cut(s) 268
AgsI TTSAA 7 cut(s) 56, 302, 742, 752, 812, 856, 1189
AluBI AGCT 5 cut(s) 85, 293, 424, 825, 883
AluI AGCT 5 cut(s) 85, 293, 424, 825, 883
Alw21I GWGCWC 2 cut(s) 340, 617
Alw26I GTCTC 4 cut(s) 142, 187, 564, 600
AlwI GGATC 2 cut(s) 464, 490
Ama87I CYCGRG 1 cut(s) 554
ApeKI GCWGC 4 cut(s) 36, 408, 1136, 1235
ApoI RAATTY 5 cut(s) 256, 390, 693, 746, 812
ArsI GACNNNNNNTTYG 2 cut(s) 892, 924
AseI ATTAAT 1 cut(s) 11
Asp700I GAANNNNTTC 2 cut(s) 141, 380
AspLEI GCGC 1 cut(s) 1090
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 1183
AsuHPI GGTGA 3 cut(s) 90, 194, 1249
AsuNHI GCTAGC 1 cut(s) 1177
AvaI CYCGRG 1 cut(s) 554
AvaII GGWCC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 1131
BarI GAAGNNNNNNTAC 2 cut(s) 1181, 1213
BauI CACGAG 2 cut(s) 339, 764
Bbv12I GWGCWC 2 cut(s) 340, 617
BbvI GCAGC 4 cut(s) 48, 395, 1123, 1247
BccI CCATC 6 cut(s) 26, 398, 827, 854, 1158, 1289
BcgI CGANNNNNNTGC 4 cut(s) 202, 236, 317, 351
BclI TGATCA 1 cut(s) 1107
BcnI CCSGG 1 cut(s) 1183
BcoDI GTCTC 4 cut(s) 142, 187, 564, 600
BfaI CTAG 3 cut(s) 527, 605, 1178
BfmI CTRYAG 1 cut(s) 1137
BfrI CTTAAG 1 cut(s) 268
BisI GCNGC 4 cut(s) 37, 409, 1137, 1236
BlsI GCNGC 4 cut(s) 38, 410, 1138, 1237
Bme1390I CCNGG 1 cut(s) 1183
Bme18I GGWCC 1 cut(s) 191
BmeT110I CYCGRG 1 cut(s) 554
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 2 cut(s) 193, 920
BmrFI CCNGG 1 cut(s) 1183
BmrI ACTGGG 1 cut(s) 1069
BmsI GCATC 1 cut(s) 1057
BmtI GCTAGC 1 cut(s) 1181
BmuI ACTGGG 1 cut(s) 1069
BoxI GACNNNNGTC 1 cut(s) 636
BpuMI CCSGG 1 cut(s) 1183
BsaJI CCNNGG 2 cut(s) 542, 1211
Bsc4I CCNNNNNNNGG 1 cut(s) 605
Bse1I ACTGG 3 cut(s) 251, 499, 1075
Bse3DI GCAATG 2 cut(s) 924, 996
BseDI CCNNGG 2 cut(s) 542, 1211
BseGI GGATG 2 cut(s) 1018, 1281
BseLI CCNNNNNNNGG 1 cut(s) 605
BseMI GCAATG 2 cut(s) 924, 996
BseMII CTCAG 1 cut(s) 840
BseNI ACTGG 3 cut(s) 251, 499, 1075
BseRI GAGGAG 1 cut(s) 1290
BseXI GCAGC 4 cut(s) 48, 395, 1123, 1247
BsgI GTGCAG 1 cut(s) 756
Bsh1236I CGCG 1 cut(s) 954
Bsh1285I CGRYCG 1 cut(s) 952
BsiEI CGRYCG 1 cut(s) 952
BsiHKAI GWGCWC 2 cut(s) 340, 617
BsiHKCI CYCGRG 1 cut(s) 554
BsiSI CCGG 1 cut(s) 1183
BslI CCNNNNNNNGG 1 cut(s) 605
BsmAI GTCTC 4 cut(s) 142, 187, 564, 600
BsoBI CYCGRG 1 cut(s) 554
Bsp1286I GDGCHC 3 cut(s) 340, 617, 1131
Bsp143I GATC 6 cut(s) 364, 469, 495, 514, 709, 1107
Bsp19I CCATGG 1 cut(s) 1211
Bsp68I TCGCGA 1 cut(s) 954
BspACI CCGC 2 cut(s) 88, 1125
BspCNI CTCAG 1 cut(s) 839
BspFNI CGCG 1 cut(s) 954
BspHI TCATGA 1 cut(s) 682
BspLI GGNNCC 2 cut(s) 193, 920
BspMAI CTGCAG 1 cut(s) 1141
BspOI GCTAGC 1 cut(s) 1181
BspPI GGATC 2 cut(s) 464, 490
BspTI CTTAAG 1 cut(s) 268
BsrDI GCAATG 2 cut(s) 924, 996
BsrI ACTGG 3 cut(s) 251, 499, 1075
BssECI CCNNGG 2 cut(s) 542, 1211
BssMI GATC 6 cut(s) 364, 469, 495, 514, 709, 1107
BssSI CACGAG 2 cut(s) 339, 764
BssT1I CCWWGG 2 cut(s) 542, 1211
Bst2BI CACGAG 2 cut(s) 339, 764
Bst4CI ACNGT 4 cut(s) 206, 322, 680, 950
BstAFI CTTAAG 1 cut(s) 268
BstC8I GCNNGC 3 cut(s) 885, 1127, 1179
BstDEI CTNAG 2 cut(s) 826, 1305
BstDSI CCRYGG 1 cut(s) 1211
BstF5I GGATG 2 cut(s) 1018, 1281
BstFNI CGCG 1 cut(s) 954
BstHHI GCGC 1 cut(s) 1090
BstKTI GATC 6 cut(s) 367, 472, 498, 517, 712, 1110
BstMAI GTCTC 4 cut(s) 142, 187, 564, 600
BstMBI GATC 6 cut(s) 364, 469, 495, 514, 709, 1107
BstMCI CGRYCG 1 cut(s) 952
BstMWI GCNNNNNNNGC 1 cut(s) 1067
BstPAI GACNNNNGTC 1 cut(s) 636
BstSCI CCNGG 1 cut(s) 1181
BstSFI CTRYAG 1 cut(s) 1137
BstUI CGCG 1 cut(s) 954
BstV1I GCAGC 4 cut(s) 48, 395, 1123, 1247
BtgI CCRYGG 1 cut(s) 1211
BtsCI GGATG 2 cut(s) 1018, 1281
BtsI GCAGTG 4 cut(s) 97, 773, 944, 1146
BtsIMutI CAGTG 7 cut(s) 97, 244, 773, 944, 1090, 1103, 1146
BtuMI TCGCGA 1 cut(s) 954
Cac8I GCNNGC 3 cut(s) 885, 1127, 1179
CciI TCATGA 1 cut(s) 682
CfoI GCGC 1 cut(s) 1090
Cfr13I GGNCC 1 cut(s) 191
DdeI CTNAG 2 cut(s) 826, 1305
DpnI GATC 6 cut(s) 366, 471, 497, 516, 711, 1109
DpnII GATC 6 cut(s) 364, 469, 495, 514, 709, 1107
DraI TTTAAA 2 cut(s) 255, 288
Eco130I CCWWGG 2 cut(s) 542, 1211
Eco24I GRGCYC 1 cut(s) 1131
Eco47I GGWCC 1 cut(s) 191
Eco57I CTGAAG 2 cut(s) 609, 1083
Eco88I CYCGRG 1 cut(s) 554
EcoRI GAATTC 1 cut(s) 812
EcoT14I CCWWGG 2 cut(s) 542, 1211
EcoT22I ATGCAT 1 cut(s) 647
EcoT38I GRGCYC 1 cut(s) 1131
ErhI CCWWGG 2 cut(s) 542, 1211
FauI CCCGC 1 cut(s) 1118
FauNDI CATATG 1 cut(s) 166
FbaI TGATCA 1 cut(s) 1107
Fnu4HI GCNGC 4 cut(s) 37, 409, 1137, 1236
FokI GGATG 2 cut(s) 1025, 1268
FriOI GRGCYC 1 cut(s) 1131
Fsp4HI GCNGC 4 cut(s) 37, 409, 1137, 1236
FspBI CTAG 3 cut(s) 527, 605, 1178
GlaI GCGC 1 cut(s) 1089
GluI GCNGC 4 cut(s) 37, 409, 1137, 1236
HapII CCGG 1 cut(s) 1183
HhaI GCGC 1 cut(s) 1090
Hin6I GCGC 1 cut(s) 1088
HinP1I GCGC 1 cut(s) 1088
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 7 cut(s) 95, 298, 356, 376, 557, 752, 767
HpaII CCGG 1 cut(s) 1183
HphI GGTGA 3 cut(s) 90, 194, 1249
Hpy166II GTNNAC 1 cut(s) 1144
Hpy188I TCNGA 6 cut(s) 128, 147, 191, 432, 714, 818
Hpy188III TCNNGA 8 cut(s) 134, 328, 341, 368, 554, 683, 916, 953
Hpy8I GTNNAC 1 cut(s) 1144
HpyAV CCTTC 1 cut(s) 1256
HpyCH4III ACNGT 4 cut(s) 206, 322, 680, 950
HpyCH4IV ACGT 1 cut(s) 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 1067
HpyF3I CTNAG 2 cut(s) 826, 1305
HpySE526I ACGT 1 cut(s) 334
HspAI GCGC 1 cut(s) 1088
Ksp22I TGATCA 1 cut(s) 1107
Kzo9I GATC 6 cut(s) 364, 469, 495, 514, 709, 1107
LmnI GCTCC 2 cut(s) 90, 421
Lsp1109I GCAGC 4 cut(s) 48, 395, 1123, 1247
LweI GCATC 1 cut(s) 1057
MaeI CTAG 3 cut(s) 527, 605, 1178
MaeII ACGT 1 cut(s) 334
MaeIII GTNAC 2 cut(s) 206, 1097
MalI GATC 6 cut(s) 366, 471, 497, 516, 711, 1109
MboI GATC 6 cut(s) 364, 469, 495, 514, 709, 1107
MboII GAAGA 6 cut(s) 38, 289, 509, 615, 831, 1076
MfeI CAATTG 3 cut(s) 360, 536, 888
MhlI GDGCHC 3 cut(s) 340, 617, 1131
MlyI GAGTC 2 cut(s) 566, 776
MnlI CCTC 7 cut(s) 154, 610, 793, 932, 979, 1004, 1311
Mph1103I ATGCAT 1 cut(s) 647
MroXI GAANNNNTTC 2 cut(s) 141, 380
MseI TTAA 7 cut(s) 11, 254, 269, 287, 465, 479, 983
MslI CAYNNNNRTG 2 cut(s) 681, 687
MspCI CTTAAG 1 cut(s) 268
MspI CCGG 1 cut(s) 1183
MspR9I CCNGG 1 cut(s) 1183
MunI CAATTG 3 cut(s) 360, 536, 888
MvnI CGCG 1 cut(s) 954
MwoI GCNNNNNNNGC 1 cut(s) 1067
NciI CCSGG 1 cut(s) 1183
NcoI CCATGG 1 cut(s) 1211
NdeI CATATG 1 cut(s) 166
NdeII GATC 6 cut(s) 364, 469, 495, 514, 709, 1107
NheI GCTAGC 1 cut(s) 1177
NlaIV GGNNCC 2 cut(s) 193, 920
NmeAIII GCCGAG 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 1097
NruI TCGCGA 1 cut(s) 954
NsiI ATGCAT 1 cut(s) 647
PaeR7I CTCGAG 1 cut(s) 554
PagI TCATGA 1 cut(s) 682
PdmI GAANNNNTTC 2 cut(s) 141, 380
PfeI GAWTC 5 cut(s) 95, 298, 356, 376, 752
PkrI GCNGC 4 cut(s) 38, 410, 1138, 1237
PleI GAGTC 2 cut(s) 565, 775
PpsI GAGTC 2 cut(s) 565, 775
PshAI GACNNNNGTC 1 cut(s) 636
PshBI ATTAAT 1 cut(s) 11
PspN4I GGNNCC 2 cut(s) 193, 920
PspPI GGNCC 1 cut(s) 191
PsrI GAACNNNNNNTAC 2 cut(s) 1136, 1168
PstI CTGCAG 1 cut(s) 1141
RruI TCGCGA 1 cut(s) 954
RseI CAYNNNNRTG 2 cut(s) 681, 687
SaqAI TTAA 7 cut(s) 11, 254, 269, 287, 465, 479, 983
SatI GCNGC 4 cut(s) 37, 409, 1137, 1236
Sau3AI GATC 6 cut(s) 364, 469, 495, 514, 709, 1107
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 2 cut(s) 566, 776
ScrFI CCNGG 1 cut(s) 1183
SduI GDGCHC 3 cut(s) 340, 617, 1131
SfaNI GCATC 1 cut(s) 1057
SfcI CTRYAG 1 cut(s) 1137
Sfr274I CTCGAG 1 cut(s) 554
SinI GGWCC 1 cut(s) 191
SlaI CTCGAG 1 cut(s) 554
SmiI ATTTAAAT 1 cut(s) 255
SmiMI CAYNNNNRTG 2 cut(s) 681, 687
SmlI CTYRAG 2 cut(s) 268, 554
SmoI CTYRAG 2 cut(s) 268, 554
SsiI CCGC 2 cut(s) 88, 1125
SspI AATATT 3 cut(s) 46, 316, 1151
SspMI CTAG 3 cut(s) 527, 605, 1178
StyD4I CCNGG 1 cut(s) 1181
StyI CCWWGG 2 cut(s) 542, 1211
SwaI ATTTAAAT 1 cut(s) 255
TaaI ACNGT 4 cut(s) 206, 322, 680, 950
TaiI ACGT 1 cut(s) 337
TaqI TCGA 3 cut(s) 327, 555, 759
TfiI GAWTC 5 cut(s) 95, 298, 356, 376, 752
Tru1I TTAA 7 cut(s) 11, 254, 269, 287, 465, 479, 983
Tru9I TTAA 7 cut(s) 11, 254, 269, 287, 465, 479, 983
TscAI CASTG 7 cut(s) 97, 251, 780, 944, 1090, 1110, 1146
TseFI GTSAC 1 cut(s) 1097
TseI GCWGC 4 cut(s) 36, 408, 1136, 1235
Tsp45I GTSAC 1 cut(s) 1097
TspDTI ATGAA 6 cut(s) 89, 188, 245, 373, 705, 1082
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 7 cut(s) 97, 251, 780, 944, 1090, 1110, 1146
Vha464I CTTAAG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 191
VspI ATTAAT 1 cut(s) 11
XapI RAATTY 5 cut(s) 256, 390, 693, 746, 812
XhoI CTCGAG 1 cut(s) 554
XmnI GAANNNNTTC 2 cut(s) 141, 380
XspI CTAG 3 cut(s) 527, 605, 1178
Zsp2I ATGCAT 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.