Rorug07G0065700

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
4974293 .. 4975438
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0065700.1

Sequence Viewer

Length: 588 bp
ATGGCCTCCCTTCCTTTTGCCATTTCCTCTCTGACTCTGCTCTTTCTCATTTCCCTGTTTCCATCATCCACCCTTTCACAAGACCCCAACTCCTCAATCCCAACCGTAGCGCAATGCGCTCCTCAGCTGCTTCCACTGGCCACATGCGCACCATTTGTGCAAGGCACCGCCCCGTCACCTGCACAGTCATGCTGTGACAACCTCAATCTGGTCTATAGCCAGCAGCCTAGATGCCTTTGCCTTTTGCTCAACAGCTCTACTCTGAGCTCTTTCCCTATTAACACCACACTAGCTCTTCAGCTGCCTGCTCTTTGCACCCTTCCAGTCGATGCCTCTGCTTGTTCGCGAGCACAGGTGCCACCTAGTACCCCTAGTTCTCAAGTTTCCTTTGGGGCAAACAACACCTCACCTGCTACTAACTCTACAGTGGCTGCTTCTCCAATGGTTCAAGCTCCACCGCCAAGACCAACCACGATGGGGGTAGGGTTTGGCAGAAATGCAAGTAGTGGTCTGAAATCAAAGACTGGAAGTTATCTCACAGTGACGTTGATTATCGCTGGTTTTCTGATGCCAGGAATTCTGTTTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

195

Amino Acids

20.03

Weight (kDa)

8.5

Isoelectric Point (pI)

64.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 32 - 114 3.8e-14 Probable lipid transfer
Tryp_alpha_amyl PF00234 39 - 111 1.4e-09 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 187, 418
Acc16I TGCGCA 1 cut(s) 148
Acc36I ACCTGC 2 cut(s) 187, 418
AccB1I GGYRCC 2 cut(s) 164, 355
AccII CGCG 1 cut(s) 346
AciI CCGC 2 cut(s) 168, 458
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 1 cut(s) 576
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 2 cut(s) 208, 477
AgsI TTSAA 1 cut(s) 449
AjnI CCWGG 1 cut(s) 571
AluBI AGCT 6 cut(s) 127, 255, 267, 293, 301, 452
AluI AGCT 6 cut(s) 127, 255, 267, 293, 301, 452
Alw21I GWGCWC 2 cut(s) 269, 352
AlwNI CAGNNNCTG 1 cut(s) 431
AoxI GGCC 2 cut(s) 3, 138
ApeKI GCWGC 4 cut(s) 127, 223, 301, 431
ApoI RAATTY 1 cut(s) 576
AspLEI GCGC 3 cut(s) 112, 119, 149
AsuHPI GGTGA 2 cut(s) 168, 399
BalI TGGCCA 1 cut(s) 140
BanI GGYRCC 2 cut(s) 164, 355
BanII GRGCYC 1 cut(s) 269
Bbv12I GWGCWC 2 cut(s) 269, 352
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 4 cut(s) 114, 235, 288, 418
BccI CCATC 2 cut(s) 70, 469
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BciT130I CCWGG 1 cut(s) 573
BfaI CTAG 4 cut(s) 228, 290, 363, 372
BfmI CTRYAG 2 cut(s) 214, 423
BfuAI ACCTGC 2 cut(s) 187, 418
BisI GCNGC 4 cut(s) 128, 224, 302, 432
BlsI GCNGC 4 cut(s) 129, 225, 303, 433
Bme1390I CCNGG 1 cut(s) 573
BmiI GGNNCC 2 cut(s) 166, 357
BmrFI CCNGG 1 cut(s) 573
BmsI GCATC 3 cut(s) 221, 319, 558
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 363
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 477
Bse1I ACTGG 3 cut(s) 141, 323, 529
Bse3DI GCAATG 1 cut(s) 119
BseBI CCWGG 1 cut(s) 573
BseGI GGATG 1 cut(s) 65
BseLI CCNNNNNNNGG 2 cut(s) 208, 477
BseMI GCAATG 1 cut(s) 119
BseMII CTCAG 2 cut(s) 137, 254
BseNI ACTGG 3 cut(s) 141, 323, 529
BseRI GAGGAG 2 cut(s) 82, 111
BseXI GCAGC 4 cut(s) 114, 235, 288, 418
BsgI GTGCAG 1 cut(s) 165
Bsh1236I CGCG 1 cut(s) 346
BshFI GGCC 2 cut(s) 5, 140
BshNI GGYRCC 2 cut(s) 164, 355
BsiHKAI GWGCWC 2 cut(s) 269, 352
BslI CCNNNNNNNGG 2 cut(s) 208, 477
BsnI GGCC 2 cut(s) 5, 140
Bsp1286I GDGCHC 2 cut(s) 269, 352
Bsp68I TCGCGA 1 cut(s) 346
BspACI CCGC 2 cut(s) 168, 458
BspANI GGCC 2 cut(s) 5, 140
BspCNI CTCAG 2 cut(s) 136, 255
BspFNI CGCG 1 cut(s) 346
BspLI GGNNCC 2 cut(s) 166, 357
BspMI ACCTGC 2 cut(s) 187, 418
BspQI GCTCTTC 1 cut(s) 300
BspT107I GGYRCC 2 cut(s) 164, 355
BsrDI GCAATG 1 cut(s) 119
BsrI ACTGG 3 cut(s) 141, 323, 529
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 4 cut(s) 106, 186, 427, 541
Bst6I CTCTTC 1 cut(s) 300
BstC8I GCNNGC 3 cut(s) 221, 306, 348
BstDEI CTNAG 2 cut(s) 123, 263
BstF5I GGATG 1 cut(s) 65
BstFNI CGCG 1 cut(s) 346
BstHHI GCGC 3 cut(s) 112, 119, 149
BstMWI GCNNNNNNNGC 2 cut(s) 116, 146
BstNI CCWGG 1 cut(s) 573
BstNSI RCATGY 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 571
BstSFI CTRYAG 2 cut(s) 214, 423
BstUI CGCG 1 cut(s) 346
BstV1I GCAGC 4 cut(s) 114, 235, 288, 418
BsuRI GGCC 2 cut(s) 5, 140
BtsCI GGATG 1 cut(s) 65
BtsIMutI CAGTG 3 cut(s) 134, 432, 546
BtuMI TCGCGA 1 cut(s) 346
BveI ACCTGC 2 cut(s) 187, 418
Cac8I GCNNGC 3 cut(s) 221, 306, 348
CaiI CAGNNNCTG 1 cut(s) 431
CfoI GCGC 3 cut(s) 112, 119, 149
Csp6I GTAC 1 cut(s) 366
CviAII CATG 2 cut(s) 144, 189
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 2 cut(s) 123, 263
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Ecl136II GAGCTC 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 269
Eco53kI GAGCTC 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 576
EcoRII CCWGG 1 cut(s) 571
EcoT38I GRGCYC 1 cut(s) 269
FaeI CATG 2 cut(s) 147, 192
FaiI YATR 3 cut(s) 145, 190, 216
FatI CATG 2 cut(s) 143, 188
Fnu4HI GCNGC 4 cut(s) 128, 224, 302, 432
FokI GGATG 1 cut(s) 52
FriOI GRGCYC 1 cut(s) 269
Fsp4HI GCNGC 4 cut(s) 128, 224, 302, 432
FspAI RTGCGCAY 1 cut(s) 148
FspBI CTAG 4 cut(s) 228, 290, 363, 372
FspI TGCGCA 1 cut(s) 148
GlaI GCGC 3 cut(s) 111, 118, 148
GluI GCNGC 4 cut(s) 128, 224, 302, 432
HaeIII GGCC 2 cut(s) 5, 140
HhaI GCGC 3 cut(s) 112, 119, 149
Hin1II CATG 2 cut(s) 147, 192
Hin6I GCGC 3 cut(s) 110, 117, 147
HinP1I GCGC 3 cut(s) 110, 117, 147
HinfI GANTC 1 cut(s) 34
HphI GGTGA 2 cut(s) 168, 399
Hpy188I TCNGA 4 cut(s) 33, 264, 513, 567
Hpy188III TCNNGA 1 cut(s) 345
HpyAV CCTTC 2 cut(s) 20, 329
HpyCH4III ACNGT 4 cut(s) 106, 186, 427, 541
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 4 cut(s) 160, 182, 315, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 146
HpyF3I CTNAG 2 cut(s) 123, 263
HpySE526I ACGT 1 cut(s) 545
Hsp92II CATG 2 cut(s) 147, 192
HspAI GCGC 3 cut(s) 110, 117, 147
LguI GCTCTTC 1 cut(s) 300
LmnI GCTCC 2 cut(s) 124, 457
Lsp1109I GCAGC 4 cut(s) 114, 235, 288, 418
LweI GCATC 3 cut(s) 221, 319, 558
MaeI CTAG 4 cut(s) 228, 290, 363, 372
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 3 cut(s) 174, 194, 541
MboII GAAGA 1 cut(s) 287
MhlI GDGCHC 2 cut(s) 269, 352
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 1 cut(s) 576
MluNI TGGCCA 1 cut(s) 140
MlyI GAGTC 1 cut(s) 28
MnlI CCTC 7 cut(s) 16, 37, 103, 132, 212, 343, 415
Mox20I TGGCCA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 140
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 187
Msp20I TGGCCA 1 cut(s) 140
MspA1I CMGCKG 2 cut(s) 127, 301
MspR9I CCNGG 1 cut(s) 573
MvaI CCWGG 1 cut(s) 573
MvnI CGCG 1 cut(s) 346
MwoI GCNNNNNNNGC 2 cut(s) 116, 146
NlaIII CATG 2 cut(s) 147, 192
NlaIV GGNNCC 2 cut(s) 166, 357
NmuCI GTSAC 3 cut(s) 174, 194, 541
NruI TCGCGA 1 cut(s) 346
NsbI TGCGCA 1 cut(s) 148
NspI RCATGY 1 cut(s) 147
PaqCI CACCTGC 2 cut(s) 187, 418
PciSI GCTCTTC 1 cut(s) 300
PkrI GCNGC 4 cut(s) 129, 225, 303, 433
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
Psp124BI GAGCTC 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 571
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 2 cut(s) 166, 357
PsrI GAACNNNNNNTAC 2 cut(s) 358, 390
PstNI CAGNNNCTG 1 cut(s) 431
PvuII CAGCTG 2 cut(s) 127, 301
RruI TCGCGA 1 cut(s) 346
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
RseI CAYNNNNRTG 1 cut(s) 187
SacI GAGCTC 1 cut(s) 269
SapI GCTCTTC 1 cut(s) 300
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 4 cut(s) 128, 224, 302, 432
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 573
SduI GDGCHC 2 cut(s) 269, 352
SfaNI GCATC 3 cut(s) 221, 319, 558
SfcI CTRYAG 2 cut(s) 214, 423
SmiMI CAYNNNNRTG 1 cut(s) 187
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
Sse9I AATT 1 cut(s) 576
SsiI CCGC 2 cut(s) 168, 458
SspMI CTAG 4 cut(s) 228, 290, 363, 372
SstI GAGCTC 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 571
TaaI ACNGT 4 cut(s) 106, 186, 427, 541
TaiI ACGT 1 cut(s) 548
TaqI TCGA 1 cut(s) 327
TasI AATT 1 cut(s) 576
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 3 cut(s) 141, 432, 546
TseFI GTSAC 3 cut(s) 174, 194, 541
TseI GCWGC 4 cut(s) 127, 223, 301, 431
Tsp45I GTSAC 3 cut(s) 174, 194, 541
TspRI CASTG 3 cut(s) 141, 432, 546
XapI RAATTY 1 cut(s) 576
XceI RCATGY 1 cut(s) 147
XspI CTAG 4 cut(s) 228, 290, 363, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.