FvH4_5g37440

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000490
Physical Location & Seq
Forward (+)
27551845 .. 27552848
1004 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37440.t1

Sequence Viewer

Length: 756 bp
ATGAAGAAGATGGCCTCAGCTGAGAACAATAACAGGAAGGACTTTCTGCAGTTCCTCTTGGAGAACACTAACACTCATGAAGACGGTTCACTATCCCTTACGGTGCAACAACAGAAGGGCATGCTCACGGATATTGTGGTGGGTGGAATTGACACTACGGCAACAGTAGTGGAATGGGTTCTGGCTGAGCTGATGGAGCACCCAGAAGAAATGATAAAAGTTCAAGAAGAACTAACACAAATTGTTGGGTTGAACAACTTGGTTGAAGAGTTTCATTTGCCTAACTTACATCACTTAGATGCTGTGATCAAGGAGACGTTTCGCTTGCACCCTATACTCCCCTTTTTAGTGCCCCGGTGTCCAAGCCAATCTACCACCATTGGTGGCTTTTACATACCAAAAGGTTCCACTATTTTTCTGAACGCTTGGGCCATACACAGAGATCCAATTGTTTGGGAAGCTCCCTTGGAATTTAGACCCCAGAGGTTCCTAAATCCTAGCAACAAGTTTGATTACTTGGGTAATAAGTTTCACTTTCTTCCATTTGGTTCTGGGAGAAGAGTTTGTGCTGGGATTCCCTTAGCAGAGAGGATGCTAATCTATGAATTGGCTTCATTCTTGCATTCGTTCGATTGGAAATTGCCTGATGACGAAAAGCTTGACCTCTCAGACAAATTTGGAATTGTGACAAAGAAGAAGACTCCACTTACTGCTGTACCAACAGTCAGGTTATCCAATTTGGAGCTCTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

252

Amino Acids

28.61

Weight (kDa)

5.85

Isoelectric Point (pI)

31.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 5 - 234 1.4e-67 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 437
AcsI RAATTY 2 cut(s) 470, 674
AfaI GTAC 1 cut(s) 717
AgsI TTSAA 3 cut(s) 224, 253, 266
AluBI AGCT 5 cut(s) 20, 190, 461, 658, 745
AluI AGCT 5 cut(s) 20, 190, 461, 658, 745
Alw21I GWGCWC 2 cut(s) 201, 747
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 1 cut(s) 437
AoxI GGCC 2 cut(s) 12, 429
ApoI RAATTY 2 cut(s) 470, 674
Asp700I GAANNNNTTC 2 cut(s) 177, 270
AspS9I GGNCC 1 cut(s) 429
AsuC2I CCSGG 1 cut(s) 355
BaeGI GKGCMC 1 cut(s) 354
BaeI ACNNNNGTAYC 2 cut(s) 699, 732
BanII GRGCYC 1 cut(s) 747
BbsI GAAGAC 2 cut(s) 87, 704
Bbv12I GWGCWC 2 cut(s) 201, 747
BbvCI CCTCAGC 1 cut(s) 16
BccI CCATC 2 cut(s) 4, 187
BceAI ACGGC 1 cut(s) 174
BclI TGATCA 1 cut(s) 306
BcnI CCSGG 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 1 cut(s) 498
BfmI CTRYAG 1 cut(s) 47
BlpI GCTNAGC 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 355
BmgT120I GGNCC 1 cut(s) 429
BmiI GGNNCC 2 cut(s) 406, 488
BmrFI CCNGG 1 cut(s) 355
BmsI GCATC 2 cut(s) 289, 582
BpiI GAAGAC 2 cut(s) 87, 704
Bpu10I CCTNAGC 2 cut(s) 16, 580
Bpu1102I GCTNAGC 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 355
BsaBI GATNNNNATC 1 cut(s) 596
BsaJI CCNNGG 2 cut(s) 353, 465
Bse8I GATNNNNATC 1 cut(s) 596
BseDI CCNNGG 2 cut(s) 353, 465
BseGI GGATG 1 cut(s) 597
BseJI GATNNNNATC 1 cut(s) 596
BseMII CTCAG 4 cut(s) 12, 30, 177, 681
BseSI GKGCMC 1 cut(s) 354
BseYI CCCAGC 1 cut(s) 569
BshFI GGCC 2 cut(s) 14, 431
BsiHKAI GWGCWC 2 cut(s) 201, 747
BsiSI CCGG 1 cut(s) 355
BsmAI GTCTC 1 cut(s) 308
BsmBI CGTCTC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 2 cut(s) 14, 431
Bsp1286I GDGCHC 3 cut(s) 201, 354, 747
Bsp143I GATC 2 cut(s) 306, 442
Bsp1720I GCTNAGC 1 cut(s) 186
BspANI GGCC 2 cut(s) 14, 431
BspCNI CTCAG 4 cut(s) 13, 29, 178, 680
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 406, 488
BspMAI CTGCAG 1 cut(s) 51
BspPI GGATC 1 cut(s) 437
BssECI CCNNGG 2 cut(s) 353, 465
BssMI GATC 2 cut(s) 306, 442
BssT1I CCWWGG 1 cut(s) 465
Bst4CI ACNGT 4 cut(s) 86, 103, 166, 724
Bst6I CTCTTC 2 cut(s) 261, 553
BstC8I GCNNGC 2 cut(s) 122, 326
BstDEI CTNAG 6 cut(s) 16, 21, 186, 295, 580, 667
BstF5I GGATG 1 cut(s) 597
BstKTI GATC 2 cut(s) 309, 445
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 2 cut(s) 306, 442
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 353
BstSFI CTRYAG 1 cut(s) 47
BstSLI GKGCMC 1 cut(s) 354
BstV2I GAAGAC 2 cut(s) 87, 704
BstX2I RGATCY 1 cut(s) 442
BstXI CCANNNNNNTGG 1 cut(s) 453
BstYI RGATCY 1 cut(s) 442
BsuRI GGCC 2 cut(s) 14, 431
BtsCI GGATG 1 cut(s) 597
Cac8I GCNNGC 2 cut(s) 122, 326
CciI TCATGA 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 429
Csp6I GTAC 1 cut(s) 716
CspCI CAANNNNNGTGG 2 cut(s) 150, 185
CviAII CATG 2 cut(s) 77, 121
CviQI GTAC 1 cut(s) 716
DdeI CTNAG 6 cut(s) 16, 21, 186, 295, 580, 667
DpnI GATC 2 cut(s) 308, 444
DpnII GATC 2 cut(s) 306, 442
Eam1104I CTCTTC 2 cut(s) 261, 553
EarI CTCTTC 2 cut(s) 261, 553
Ecl136II GAGCTC 1 cut(s) 745
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 747
Eco53kI GAGCTC 1 cut(s) 745
EcoICRI GAGCTC 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 1 cut(s) 747
ErhI CCWWGG 1 cut(s) 465
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 2 cut(s) 80, 124
FaiI YATR 7 cut(s) 78, 122, 335, 395, 434, 603, 750
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FatI CATG 2 cut(s) 76, 120
FbaI TGATCA 1 cut(s) 306
FokI GGATG 1 cut(s) 604
FriOI GRGCYC 1 cut(s) 747
FspBI CTAG 1 cut(s) 498
GsaI CCCAGC 1 cut(s) 573
HaeIII GGCC 2 cut(s) 14, 431
HapII CCGG 1 cut(s) 355
Hin1II CATG 2 cut(s) 80, 124
HindIII AAGCTT 1 cut(s) 656
HinfI GANTC 2 cut(s) 574, 700
HpaII CCGG 1 cut(s) 355
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 2 cut(s) 420, 670
Hpy188III TCNNGA 2 cut(s) 77, 224
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 31, 109
HpyCH4III ACNGT 4 cut(s) 86, 103, 166, 724
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 4 cut(s) 49, 106, 328, 622
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 6 cut(s) 16, 21, 186, 295, 580, 667
HpySE526I ACGT 1 cut(s) 317
Hsp92II CATG 2 cut(s) 80, 124
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 2 cut(s) 306, 442
LmnI GCTCC 3 cut(s) 196, 466, 742
LpnPI CCDG 9 cut(s) 19, 167, 216, 368, 494, 537, 555, 657, 712
LweI GCATC 2 cut(s) 289, 582
MaeI CTAG 1 cut(s) 498
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 1 cut(s) 685
MalI GATC 2 cut(s) 308, 444
MboI GATC 2 cut(s) 306, 442
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 1 cut(s) 442
MhlI GDGCHC 3 cut(s) 201, 354, 747
MluCI AATT 9 cut(s) 147, 240, 447, 470, 605, 638, 674, 681, 736
MlyI GAGTC 1 cut(s) 694
MnlI CCTC 5 cut(s) 25, 65, 477, 582, 674
MroXI GAANNNNTTC 2 cut(s) 177, 270
MseI TTAA 1 cut(s) 754
MslI CAYNNNNRTG 1 cut(s) 297
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 1 cut(s) 355
MspR9I CCNGG 1 cut(s) 355
MunI CAATTG 1 cut(s) 447
Mva1269I GAATGC 1 cut(s) 622
MwoI GCNNNNNNNGC 1 cut(s) 196
NciI CCSGG 1 cut(s) 355
NdeII GATC 2 cut(s) 306, 442
NlaIII CATG 2 cut(s) 80, 124
NlaIV GGNNCC 2 cut(s) 406, 488
NmuCI GTSAC 1 cut(s) 685
NspI RCATGY 1 cut(s) 124
PaeI GCATGC 1 cut(s) 124
PagI TCATGA 1 cut(s) 76
PctI GAATGC 1 cut(s) 622
PdmI GAANNNNTTC 2 cut(s) 177, 270
PfeI GAWTC 1 cut(s) 574
PleI GAGTC 1 cut(s) 694
PpsI GAGTC 1 cut(s) 694
Psp124BI GAGCTC 1 cut(s) 747
PspFI CCCAGC 1 cut(s) 569
PspN4I GGNNCC 2 cut(s) 406, 488
PspPI GGNCC 1 cut(s) 429
PstI CTGCAG 1 cut(s) 51
PsuI RGATCY 1 cut(s) 442
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 1 cut(s) 717
RsaNI GTAC 1 cut(s) 716
RseI CAYNNNNRTG 1 cut(s) 297
SacI GAGCTC 1 cut(s) 747
SaqAI TTAA 1 cut(s) 754
Sau3AI GATC 2 cut(s) 306, 442
Sau96I GGNCC 1 cut(s) 429
SchI GAGTC 1 cut(s) 694
ScrFI CCNGG 1 cut(s) 355
SduI GDGCHC 3 cut(s) 201, 354, 747
SfaNI GCATC 2 cut(s) 289, 582
SfcI CTRYAG 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 297
SphI GCATGC 1 cut(s) 124
Sse9I AATT 9 cut(s) 147, 240, 447, 470, 605, 638, 674, 681, 736
SspMI CTAG 1 cut(s) 498
SstI GAGCTC 1 cut(s) 747
StyD4I CCNGG 1 cut(s) 353
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 4 cut(s) 86, 103, 166, 724
TaiI ACGT 1 cut(s) 320
TaqI TCGA 1 cut(s) 630
TasI AATT 9 cut(s) 147, 240, 447, 470, 605, 638, 674, 681, 736
TfiI GAWTC 1 cut(s) 574
Tru1I TTAA 1 cut(s) 754
Tru9I TTAA 1 cut(s) 754
TseFI GTSAC 1 cut(s) 685
Tsp45I GTSAC 1 cut(s) 685
TspDTI ATGAA 5 cut(s) 17, 93, 263, 603, 618
TspGWI ACGGA 1 cut(s) 143
XapI RAATTY 2 cut(s) 470, 674
XceI RCATGY 1 cut(s) 124
XmnI GAANNNNTTC 2 cut(s) 177, 270
XspI CTAG 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.