Rorug07G0065800

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000490
Physical Location & Seq
Reverse (-)
4975572 .. 4977206
1635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0065800.1

Sequence Viewer

Length: 576 bp
ATGGCTCTAACAATAGCCAACAGTGGCGGTACCAACGGCGGAGCCAGAGTCCTCTACAGAAGCTCCACCACACACCCGTACACCAACCTCTCCTCCCAACGCCACATCCTCTTCCCCCTCTCCCCAAGAAGAACCCTCCACGTGGTCTCCGCCAAGCGCTTCACCTCCAGAACCGGGAGGCTGGACAACAACAAGAACAACAAGAGGAGCAACACCACGACCAAGGACCAAGAACAAGACCAACGGACGGCGGAGATTGAAAGCCTCGCTGCCGATAACATTGATGATGGCTACTTCTTGCCTAAGCTTCCGGGAGATGAGCCGGATTTCTGGGAAGGTGAACAGTGGGACGGTCTTGGATTCTTTGTCGAGTACTTGTGGGCTTTTGGTTTTGGCTTTGCGCTTATTGGAGCAATTGCAGCTGCTGCTACATTCAATGAAGGGGCAACTGATTTCAAGGAGACTCCTACTTACAAAGATGCGATCCAGTCTCGCGAATTACTAGAAGAACCAGAGGGTTCTAGCCCGGATGTCTTTGAATCCAACCCAACTGAAGTGGCTCCTAGTTTGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

191

Amino Acids

21.14

Weight (kDa)

4.8

Isoelectric Point (pI)

54.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 29
AccB1I GGYRCC 1 cut(s) 29
AccII CGCG 1 cut(s) 495
AciI CCGC 4 cut(s) 27, 39, 150, 251
AclWI GGATC 1 cut(s) 478
AcuI CTGAAG 1 cut(s) 573
AcvI CACGTG 1 cut(s) 142
AfaI GTAC 3 cut(s) 31, 80, 374
AfeI AGCGCT 1 cut(s) 158
AfiI CCNNNNNNNGG 3 cut(s) 142, 174, 247
AgsI TTSAA 4 cut(s) 260, 436, 457, 539
AluBI AGCT 3 cut(s) 63, 307, 422
AluI AGCT 3 cut(s) 63, 307, 422
Alw26I GTCTC 3 cut(s) 151, 455, 495
AlwI GGATC 1 cut(s) 478
AlwNI CAGNNNCTG 1 cut(s) 425
Aor51HI AGCGCT 1 cut(s) 158
ApeKI GCWGC 4 cut(s) 269, 419, 422, 425
Asp718I GGTACC 1 cut(s) 29
AspLEI GCGC 2 cut(s) 159, 403
AspS9I GGNCC 1 cut(s) 226
AsuC2I CCSGG 3 cut(s) 175, 312, 527
AsuHPI GGTGA 2 cut(s) 154, 350
AvaII GGWCC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 29
BbrPI CACGTG 1 cut(s) 142
BbvI GCAGC 4 cut(s) 256, 409, 412, 431
BccI CCATC 1 cut(s) 281
BceAI ACGGC 2 cut(s) 52, 264
BcnI CCSGG 3 cut(s) 175, 312, 527
BcoDI GTCTC 3 cut(s) 151, 455, 495
BfaI CTAG 3 cut(s) 503, 522, 564
BfmI CTRYAG 1 cut(s) 55
BfoI RGCGCY 1 cut(s) 160
BisI GCNGC 4 cut(s) 270, 420, 423, 426
BlsI GCNGC 4 cut(s) 271, 421, 424, 427
BmcAI AGTACT 1 cut(s) 374
Bme1390I CCNGG 3 cut(s) 175, 312, 527
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 3 cut(s) 31, 43, 561
BmrFI CCNGG 3 cut(s) 175, 312, 527
BmsI GCATC 1 cut(s) 469
BpmI CTGGAG 1 cut(s) 151
Bpu10I CCTNAGC 1 cut(s) 303
BpuMI CCSGG 3 cut(s) 175, 312, 527
BsaAI YACGTR 1 cut(s) 142
BsaI GGTCTC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 222
BsaXI ACNNNNNCTCC 8 cut(s) 33, 47, 63, 77, 77, 107, 131, 161
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 174, 247
Bse1I ACTGG 1 cut(s) 487
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 2 cut(s) 105, 535
BseLI CCNNNNNNNGG 3 cut(s) 142, 174, 247
BseNI ACTGG 1 cut(s) 487
BseRI GAGGAG 2 cut(s) 82, 220
BseXI GCAGC 4 cut(s) 256, 409, 412, 431
Bsh1236I CGCG 1 cut(s) 495
BshNI GGYRCC 1 cut(s) 29
BsiSI CCGG 4 cut(s) 174, 311, 323, 527
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 3 cut(s) 142, 174, 247
BsmAI GTCTC 3 cut(s) 151, 455, 495
BsmFI GGGAC 1 cut(s) 362
Bso31I GGTCTC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 483
Bsp68I TCGCGA 1 cut(s) 495
BspACI CCGC 4 cut(s) 27, 39, 150, 251
BspFNI CGCG 1 cut(s) 495
BspLI GGNNCC 3 cut(s) 31, 43, 561
BspPI GGATC 1 cut(s) 478
BspT107I GGYRCC 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 151
BsrI ACTGG 1 cut(s) 487
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 222
Bst4CI ACNGT 3 cut(s) 23, 345, 353
Bst6I CTCTTC 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 425
BstBAI YACGTR 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 2 cut(s) 105, 535
BstFNI CGCG 1 cut(s) 495
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 2 cut(s) 159, 403
BstKTI GATC 1 cut(s) 486
BstMAI GTCTC 3 cut(s) 151, 455, 495
BstMBI GATC 1 cut(s) 483
BstMWI GCNNNNNNNGC 2 cut(s) 419, 425
BstSCI CCNGG 3 cut(s) 173, 310, 525
BstSFI CTRYAG 1 cut(s) 55
BstUI CGCG 1 cut(s) 495
BstV1I GCAGC 4 cut(s) 256, 409, 412, 431
BtsCI GGATG 2 cut(s) 105, 535
BtsIMutI CAGTG 2 cut(s) 28, 350
BtuMI TCGCGA 1 cut(s) 495
CaiI CAGNNNCTG 1 cut(s) 425
CfoI GCGC 2 cut(s) 159, 403
Cfr13I GGNCC 1 cut(s) 226
Csp6I GTAC 3 cut(s) 30, 79, 373
CspCI CAANNNNNGTGG 2 cut(s) 537, 572
CviQI GTAC 3 cut(s) 30, 79, 373
DdeI CTNAG 1 cut(s) 303
DpnI GATC 1 cut(s) 485
DpnII GATC 1 cut(s) 483
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 3 cut(s) 54, 139, 266
Eco130I CCWWGG 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 226
Eco47III AGCGCT 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 573
Eco72I CACGTG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaqI GGGAC 1 cut(s) 362
Fnu4HI GCNGC 4 cut(s) 270, 420, 423, 426
FokI GGATG 2 cut(s) 92, 542
Fsp4HI GCNGC 4 cut(s) 270, 420, 423, 426
FspBI CTAG 3 cut(s) 503, 522, 564
GlaI GCGC 2 cut(s) 158, 402
GluI GCNGC 4 cut(s) 270, 420, 423, 426
GsuI CTGGAG 1 cut(s) 151
HaeII RGCGCY 1 cut(s) 160
HapII CCGG 4 cut(s) 174, 311, 323, 527
HhaI GCGC 2 cut(s) 159, 403
Hin6I GCGC 2 cut(s) 157, 401
HinP1I GCGC 2 cut(s) 157, 401
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 4 cut(s) 48, 360, 463, 539
HpaII CCGG 4 cut(s) 174, 311, 323, 527
HphI GGTGA 2 cut(s) 154, 350
Hpy166II GTNNAC 2 cut(s) 81, 341
Hpy188III TCNNGA 2 cut(s) 168, 494
Hpy8I GTNNAC 2 cut(s) 81, 341
HpyAV CCTTC 2 cut(s) 329, 434
HpyCH4III ACNGT 3 cut(s) 23, 345, 353
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 1 cut(s) 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 425
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 1 cut(s) 141
HspAI GCGC 2 cut(s) 157, 401
KpnI GGTACC 1 cut(s) 33
Kzo9I GATC 1 cut(s) 483
LmnI GCTCC 5 cut(s) 41, 68, 207, 410, 565
Lsp1109I GCAGC 4 cut(s) 256, 409, 412, 431
LweI GCATC 1 cut(s) 469
MaeI CTAG 3 cut(s) 503, 522, 564
MaeII ACGT 1 cut(s) 141
MalI GATC 1 cut(s) 485
MboI GATC 1 cut(s) 483
MboII GAAGA 3 cut(s) 103, 141, 518
MfeI CAATTG 1 cut(s) 414
MluCI AATT 2 cut(s) 414, 497
MlyI GAGTC 2 cut(s) 57, 457
MmeI TCCRAC 1 cut(s) 567
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 4 cut(s) 174, 311, 323, 527
MspR9I CCNGG 3 cut(s) 175, 312, 527
MunI CAATTG 1 cut(s) 414
MvnI CGCG 1 cut(s) 495
MwoI GCNNNNNNNGC 2 cut(s) 419, 425
NciI CCSGG 3 cut(s) 175, 312, 527
NdeII GATC 1 cut(s) 483
NlaIV GGNNCC 3 cut(s) 31, 43, 561
NruI TCGCGA 1 cut(s) 495
PfeI GAWTC 2 cut(s) 360, 539
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 4 cut(s) 271, 421, 424, 427
PleI GAGTC 2 cut(s) 56, 457
PmaCI CACGTG 1 cut(s) 142
PmlI CACGTG 1 cut(s) 142
PpsI GAGTC 2 cut(s) 56, 457
Ppu21I YACGTR 1 cut(s) 142
PspCI CACGTG 1 cut(s) 142
PspN4I GGNNCC 3 cut(s) 31, 43, 561
PspPI GGNCC 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 425
PvuII CAGCTG 1 cut(s) 422
RruI TCGCGA 1 cut(s) 495
RsaI GTAC 3 cut(s) 31, 80, 374
RsaNI GTAC 3 cut(s) 30, 79, 373
SatI GCNGC 4 cut(s) 270, 420, 423, 426
Sau3AI GATC 1 cut(s) 483
Sau96I GGNCC 1 cut(s) 226
ScaI AGTACT 1 cut(s) 374
SchI GAGTC 2 cut(s) 57, 457
ScrFI CCNGG 3 cut(s) 175, 312, 527
SetI ASST 7 cut(s) 65, 90, 144, 167, 309, 340, 424
SfaNI GCATC 1 cut(s) 469
SfcI CTRYAG 1 cut(s) 55
SinI GGWCC 1 cut(s) 226
Sse9I AATT 2 cut(s) 414, 497
SsiI CCGC 4 cut(s) 27, 39, 150, 251
SspMI CTAG 3 cut(s) 503, 522, 564
StyD4I CCNGG 3 cut(s) 173, 310, 525
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 3 cut(s) 23, 345, 353
TaiI ACGT 1 cut(s) 144
TaqI TCGA 1 cut(s) 369
TasI AATT 2 cut(s) 414, 497
TatI WGTACW 1 cut(s) 372
TfiI GAWTC 2 cut(s) 360, 539
TscAI CASTG 2 cut(s) 28, 350
TseI GCWGC 4 cut(s) 269, 419, 422, 425
TspDTI ATGAA 1 cut(s) 453
TspGWI ACGGA 1 cut(s) 259
TspRI CASTG 2 cut(s) 28, 350
VpaK11BI GGWCC 1 cut(s) 226
XspI CTAG 3 cut(s) 503, 522, 564
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.