RLG00000003656

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000490
Physical Location & Seq
Forward (+)
51347335 .. 51348306
972 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003656

Sequence Viewer

Length: 825 bp
ATGTGGGATACTAGCAGTGAGAAACATGGAGATCTCAAAGCAGCTCTCACCATCTTCGTCATCATCATGACAACTGTTAGTTTCTGGTTCCTCCAGACTTGGAATAAGCACTCGAGGAACTCGAAACAAGCTCCATTGCCGCCTGGCCCTCATGGTGTTCCACTACTCGGTCACCTTCCATTTTTAGGTACCAACCATCACCACCAGTTCACAGATTTGTCAAGGGTTTATGGCCCGATTTACAGGATCCAACTCGGTACCAAACTAGTCATTGTGGTCAGCTCACCATCGCTGGTGAAAGAAGTGGTTCGTGACCAAGACACAATATTTTTTCACCGCAACCTTAAAGTGGCACAACAAATTCTCTCATATGGAGGATCCGATATAGTCTTTGGGACCCACGTTCCAGAGTGGAGGAAGATGCGCAAGATGCTCGCCAGTCAAATGCTAAGCAAAACCAACCTTGACGATTGTTATGCTCTAAGAAAACAAGAGGTTGTGAAGTCAATTAGGCATGTTTATAATGAAAAAATTGGGACCCCAATTGATTTTGGGCAGTTTGTAATGTCCACAATCTGCAACACATTCTTACGCATGTTATGGGGTGGGACTCTACAAGGAGAGAAGGCAACTGATGTTGGATCCGAGTTTAGAAAGGTAGTGGTGGAAATGATCTGGTTACTTCAGAAACCAAATGTCTCGGACTTTTTCCCTGTGCTTGCTAGGTTTCATATACAGGGAATTAGGAGCCGAGCAAAGAAGCCTCAGTCAGTAACTGAAAACATGTTCGATTCGATCAAAGAAACTCAGATGAATAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

275

Amino Acids

31.39

Weight (kDa)

9.69

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 47 - 268 4e-25 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 522
Acc16I TGCGCA 1 cut(s) 425
Acc65I GGTACC 2 cut(s) 188, 257
AccB1I GGYRCC 2 cut(s) 188, 257
AciI CCGC 2 cut(s) 140, 337
AclWI GGATC 6 cut(s) 241, 254, 372, 385, 636, 649
AcsI RAATTY 1 cut(s) 360
AcuI CTGAAG 1 cut(s) 668
AfaI GTAC 2 cut(s) 190, 259
AfiI CCNNNNNNNGG 3 cut(s) 167, 185, 349
AflIII ACRYGT 1 cut(s) 783
AhlI ACTAGT 1 cut(s) 265
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 3 cut(s) 44, 131, 282
AluI AGCT 3 cut(s) 44, 131, 282
Alw26I GTCTC 1 cut(s) 703
AlwI GGATC 6 cut(s) 241, 254, 372, 385, 636, 649
AlwNI CAGNNNCTG 1 cut(s) 776
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 2 cut(s) 145, 232
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 360
Asp700I GAANNNNTTC 1 cut(s) 306
Asp718I GGTACC 2 cut(s) 188, 257
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 4 cut(s) 146, 233, 396, 537
AsuHPI GGTGA 6 cut(s) 40, 164, 191, 276, 307, 326
AvaI CYCGRG 1 cut(s) 112
AvaII GGWCC 2 cut(s) 396, 537
BamHI GGATCC 3 cut(s) 246, 377, 641
BanI GGYRCC 2 cut(s) 188, 257
BbvI GCAGC 1 cut(s) 53
BccI CCATC 3 cut(s) 59, 204, 295
BcgI CGANNNNNNTGC 4 cut(s) 415, 449, 458, 492
BciT130I CCWGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 703
BcuI ACTAGT 1 cut(s) 265
BfaI CTAG 3 cut(s) 12, 266, 723
BglII AGATCT 1 cut(s) 31
BisI GCNGC 2 cut(s) 42, 140
BlpI GCTNAGC 1 cut(s) 449
BlsI GCNGC 2 cut(s) 43, 141
Bme1390I CCNGG 1 cut(s) 144
Bme18I GGWCC 2 cut(s) 396, 537
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 4 cut(s) 146, 233, 396, 537
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 2 cut(s) 411, 420
BpmI CTGGAG 1 cut(s) 77
Bpu1102I GCTNAGC 1 cut(s) 449
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 185, 349
Bse1I ACTGG 2 cut(s) 205, 438
Bse3DI GCAATG 1 cut(s) 134
BseBI CCWGG 1 cut(s) 144
BseLI CCNNNNNNNGG 3 cut(s) 167, 185, 349
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 2 cut(s) 779, 821
BseNI ACTGG 2 cut(s) 205, 438
BseXI GCAGC 1 cut(s) 53
BshFI GGCC 2 cut(s) 147, 234
BshNI GGYRCC 2 cut(s) 188, 257
BsiHKCI CYCGRG 1 cut(s) 112
BslFI GGGAC 3 cut(s) 409, 550, 622
BslI CCNNNNNNNGG 3 cut(s) 167, 185, 349
BsmAI GTCTC 1 cut(s) 703
BsmFI GGGAC 3 cut(s) 409, 550, 622
BsnI GGCC 2 cut(s) 147, 234
BsoBI CYCGRG 1 cut(s) 112
Bsp143I GATC 6 cut(s) 31, 246, 377, 641, 672, 795
Bsp1720I GCTNAGC 1 cut(s) 449
BspACI CCGC 2 cut(s) 140, 337
BspANI GGCC 2 cut(s) 147, 234
BspCNI CTCAG 2 cut(s) 778, 820
BspHI TCATGA 1 cut(s) 66
BspPI GGATC 6 cut(s) 241, 254, 372, 385, 636, 649
BspT107I GGYRCC 2 cut(s) 188, 257
BsrDI GCAATG 1 cut(s) 134
BsrI ACTGG 2 cut(s) 205, 438
BssMI GATC 6 cut(s) 31, 246, 377, 641, 672, 795
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 76
BstC8I GCNNGC 2 cut(s) 435, 720
BstDEI CTNAG 4 cut(s) 449, 482, 765, 807
BstEII GGTNACC 1 cut(s) 170
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 6 cut(s) 34, 249, 380, 644, 675, 798
BstMAI GTCTC 1 cut(s) 703
BstMBI GATC 6 cut(s) 31, 246, 377, 641, 672, 795
BstMWI GCNNNNNNNGC 1 cut(s) 430
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 3 cut(s) 518, 598, 787
BstPI GGTNACC 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 53
BstX2I RGATCY 4 cut(s) 31, 246, 377, 641
BstYI RGATCY 4 cut(s) 31, 246, 377, 641
BsuRI GGCC 2 cut(s) 147, 234
BtgZI GCGATG 1 cut(s) 273
BtsI GCAGTG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 435, 720
CaiI CAGNNNCTG 1 cut(s) 776
CciI TCATGA 1 cut(s) 66
CfoI GCGC 1 cut(s) 426
Cfr13I GGNCC 4 cut(s) 146, 233, 396, 537
Csp6I GTAC 2 cut(s) 189, 258
CviAII CATG 6 cut(s) 26, 67, 152, 515, 595, 784
CviJI RGCY 7 cut(s) 44, 131, 147, 234, 282, 750, 763
CviKI_1 RGCY 7 cut(s) 44, 131, 147, 234, 282, 750, 763
CviQI GTAC 2 cut(s) 189, 258
DdeI CTNAG 4 cut(s) 449, 482, 765, 807
DpnI GATC 6 cut(s) 33, 248, 379, 643, 674, 797
DpnII GATC 6 cut(s) 31, 246, 377, 641, 672, 795
Eco47I GGWCC 2 cut(s) 396, 537
Eco57I CTGAAG 1 cut(s) 668
Eco88I CYCGRG 1 cut(s) 112
Eco91I GGTNACC 1 cut(s) 170
EcoO109I RGGNCCY 2 cut(s) 396, 537
EcoO65I GGTNACC 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 142
FaeI CATG 6 cut(s) 29, 70, 155, 518, 598, 787
FaqI GGGAC 3 cut(s) 409, 550, 622
FatI CATG 6 cut(s) 25, 66, 151, 514, 594, 783
FauNDI CATATG 1 cut(s) 370
Fnu4HI GCNGC 2 cut(s) 42, 140
Fsp4HI GCNGC 2 cut(s) 42, 140
FspBI CTAG 3 cut(s) 12, 266, 723
FspI TGCGCA 1 cut(s) 425
GlaI GCGC 1 cut(s) 425
GluI GCNGC 2 cut(s) 42, 140
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 2 cut(s) 147, 234
HhaI GCGC 1 cut(s) 426
Hin1II CATG 6 cut(s) 29, 70, 155, 518, 598, 787
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HinfI GANTC 2 cut(s) 610, 791
HphI GGTGA 6 cut(s) 40, 164, 191, 276, 307, 326
Hpy166II GTNNAC 2 cut(s) 210, 570
Hpy188I TCNGA 5 cut(s) 382, 646, 687, 703, 810
Hpy188III TCNNGA 4 cut(s) 67, 94, 311, 407
Hpy8I GTNNAC 2 cut(s) 210, 570
HpyAV CCTTC 2 cut(s) 185, 619
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 1 cut(s) 579
HpyF10VI GCNNNNNNNGC 1 cut(s) 430
HpyF3I CTNAG 4 cut(s) 449, 482, 765, 807
HpySE526I ACGT 1 cut(s) 402
Hsp92II CATG 6 cut(s) 29, 70, 155, 518, 598, 787
HspAI GCGC 1 cut(s) 424
KflI GGGWCCC 2 cut(s) 396, 537
KpnI GGTACC 2 cut(s) 192, 261
Kzo9I GATC 6 cut(s) 31, 246, 377, 641, 672, 795
LmnI GCTCC 2 cut(s) 136, 747
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 2 cut(s) 411, 420
MaeI CTAG 3 cut(s) 12, 266, 723
MaeII ACGT 1 cut(s) 402
MaeIII GTNAC 4 cut(s) 170, 311, 678, 772
MalI GATC 6 cut(s) 33, 248, 379, 643, 674, 797
MboI GATC 6 cut(s) 31, 246, 377, 641, 672, 795
MboII GAAGA 2 cut(s) 46, 430
MfeI CAATTG 1 cut(s) 543
MflI RGATCY 4 cut(s) 31, 246, 377, 641
MluCI AATT 5 cut(s) 360, 507, 531, 543, 741
MlyI GAGTC 1 cut(s) 604
MmeI TCCRAC 2 cut(s) 274, 619
MnlI CCTC 7 cut(s) 101, 108, 159, 368, 408, 487, 774
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 2 cut(s) 345, 823
MslI CAYNNNNRTG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 144
MunI CAATTG 1 cut(s) 543
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 430
NdeI CATATG 1 cut(s) 370
NdeII GATC 6 cut(s) 31, 246, 377, 641, 672, 795
NlaIII CATG 6 cut(s) 29, 70, 155, 518, 598, 787
NmeAIII GCCGAG 1 cut(s) 776
NmuCI GTSAC 2 cut(s) 170, 311
NsbI TGCGCA 1 cut(s) 425
NspI RCATGY 3 cut(s) 518, 598, 787
PaeR7I CTCGAG 1 cut(s) 112
PagI TCATGA 1 cut(s) 66
PciI ACATGT 1 cut(s) 783
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 1 cut(s) 791
PkrI GCNGC 2 cut(s) 43, 141
PleI GAGTC 1 cut(s) 604
PpsI GAGTC 1 cut(s) 604
PpuMI RGGWCCY 2 cut(s) 396, 537
PscI ACATGT 1 cut(s) 783
PsiI TTATAA 1 cut(s) 522
Psp5II RGGWCCY 2 cut(s) 396, 537
Psp6I CCWGG 1 cut(s) 142
PspEI GGTNACC 1 cut(s) 170
PspGI CCWGG 1 cut(s) 142
PspPI GGNCC 4 cut(s) 146, 233, 396, 537
PspPPI RGGWCCY 2 cut(s) 396, 537
PspXI VCTCGAGB 1 cut(s) 112
PstNI CAGNNNCTG 1 cut(s) 776
PsuI RGATCY 4 cut(s) 31, 246, 377, 641
RsaI GTAC 2 cut(s) 190, 259
RsaNI GTAC 2 cut(s) 189, 258
RseI CAYNNNNRTG 1 cut(s) 65
SaqAI TTAA 2 cut(s) 345, 823
SatI GCNGC 2 cut(s) 42, 140
Sau3AI GATC 6 cut(s) 31, 246, 377, 641, 672, 795
Sau96I GGNCC 4 cut(s) 146, 233, 396, 537
SchI GAGTC 1 cut(s) 604
ScrFI CCNGG 1 cut(s) 144
SfaNI GCATC 2 cut(s) 411, 420
Sfr274I CTCGAG 1 cut(s) 112
SinI GGWCC 2 cut(s) 396, 537
SlaI CTCGAG 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
SpeI ACTAGT 1 cut(s) 265
Sse9I AATT 5 cut(s) 360, 507, 531, 543, 741
SsiI CCGC 2 cut(s) 140, 337
SspI AATATT 1 cut(s) 327
SspMI CTAG 3 cut(s) 12, 266, 723
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 1 cut(s) 405
TaqI TCGA 4 cut(s) 113, 122, 789, 794
TaqII GACCGA 1 cut(s) 158
TasI AATT 5 cut(s) 360, 507, 531, 543, 741
TauI GCSGC 1 cut(s) 142
TfiI GAWTC 1 cut(s) 791
Tru1I TTAA 2 cut(s) 345, 823
Tru9I TTAA 2 cut(s) 345, 823
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 2 cut(s) 170, 311
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 2 cut(s) 170, 311
TspDTI ATGAA 2 cut(s) 540, 719
TspRI CASTG 1 cut(s) 22
VpaK11BI GGWCC 2 cut(s) 396, 537
XapI RAATTY 1 cut(s) 360
XceI RCATGY 3 cut(s) 518, 598, 787
XhoI CTCGAG 1 cut(s) 112
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 3 cut(s) 12, 266, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.