Rh7AG193300

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000490
Physical Location & Seq
Reverse (-)
17278069 .. 17280949
2881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG193300.1

Sequence Viewer

Length: 1134 bp
ATGTGGTCATCATGGGGTACTGATGCTACCAATGATAAAGATGAAAATCTCAAAGCAATATTTCTTGCCCTTCTAGCTATGATGTTAGCTATTTTCTGGTTCCTGTGGTCCAGGAAAAAGTGCTCAAAGAACCCATTACCTCCATTGCCACCAGGACCTATAGGTTTGCCACTACTTGGAAACCTTCCCTTCTTAGGCACCAACCTTCACCATGAATTCACTGAGTTGGCGAGGGTTTATGGCCCTATTTACAAACTCCGCCTCGGAAGCAAATTATGTGTTGTGATCAGTTCCCCAACACTTCTGAAAGAAATGGTTCGTGACCATGACACTGTGTTTGCTAACCATGTTCCTACCACAGCTGCACTAGTTGGCTCATATGGAGCAAGGGACATCGCATTTGGACCCTACGGTCCAGATTGGAGGCGGCTGCGCAAAGTGTTTGTGAGTAAGATGCTAAGCAAAACCAACCTTGATGATAGCTATTCTCTAAGAAGAAAAGAGGTTCACAAGTCAATTGGTCATATTTACGACAGAATTGGCACTCCAATAGATTTGGGAAAGTTGGCATATTCGACTGCAACCAACAACGTCATGCTCATGCTATGGGGTGGAACGATATTAAAGGGAGAAAAGGCAGCTGAGGCTGGAGCTGAGTTTCGAAAAGCAGTGACTGGAACGATGGAGCTACTTGGGAAACCAAATATTTCGGACTTTTTCCCTGCACTTTCCATCTTTGATGTACAAGGAATTGAGAGGGAAGCAGAAAAGCTTATTTCGGTGACCGACAAGATTTTTGGTACTGCCATACAACAACGGATGTATACCTTGGCCAAAGGTGAAAGGAAAGACTTTCTGCAATTCCTCTTGGAATATCATAATCATGAAGATAGTGCAATATCGATTACAATGCAACAACTGAAGGCAGTACTCACGGCTGAGATAGAAAAGGTTAAGAAGAGAAAGGAGGAAAGAGCACTTGAAAAAGCTCAACATGAGGAAGAAATGATGCTGCTTGCCAGAGAACGCGCTCGGGCTGAGTTCCAAGACTGGGAGAAAAAAGAAGATAGGTTCCACTTTGATCAAAGCAAAATGAGATGTTTATTATCTATGCTGAAACTGAAGCTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

377

Amino Acids

43.0

Weight (kDa)

9.22

Isoelectric Point (pI)

30.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 50 - 311 1.3e-27 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 411
Acc16I TGCGCA 1 cut(s) 434
AccB1I GGYRCC 1 cut(s) 197
AccB7I CCANNNNNTGG 1 cut(s) 176
AccI GTMKAC 1 cut(s) 824
AccII CGCG 1 cut(s) 1029
AciI CCGC 2 cut(s) 259, 427
AcoI YGGCCR 1 cut(s) 831
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 941
AfaI GTAC 4 cut(s) 19, 744, 802, 930
AfiI CCNNNNNNNGG 3 cut(s) 176, 194, 1051
AgsI TTSAA 1 cut(s) 983
AhlI ACTAGT 1 cut(s) 367
AjnI CCWGG 2 cut(s) 110, 151
Alw21I GWGCWC 2 cut(s) 125, 979
AlwNI CAGNNNCTG 1 cut(s) 674
Ama87I CYCGRG 1 cut(s) 1032
AoxI GGCC 2 cut(s) 241, 831
ApeKI GCWGC 4 cut(s) 362, 430, 638, 1012
ApoI RAATTY 1 cut(s) 215
ArsI GACNNNNNNTTYG 6 cut(s) 320, 352, 383, 415, 779, 811
Asp700I GAANNNNTTC 1 cut(s) 315
AspLEI GCGC 2 cut(s) 435, 1031
AspS9I GGNCC 5 cut(s) 108, 155, 242, 404, 413
AsuHPI GGTGA 3 cut(s) 200, 793, 851
AsuII TTCGAA 1 cut(s) 661
AvaI CYCGRG 1 cut(s) 1032
AvaII GGWCC 4 cut(s) 108, 155, 404, 413
BalI TGGCCA 1 cut(s) 833
BanI GGYRCC 1 cut(s) 197
Bbv12I GWGCWC 2 cut(s) 125, 979
BbvCI CCTCAGC 1 cut(s) 642
BbvI GCAGC 4 cut(s) 349, 417, 650, 999
BccI CCATC 2 cut(s) 676, 740
BceAI ACGGC 1 cut(s) 951
BcgI CGANNNNNNTGC 2 cut(s) 892, 926
BciT130I CCWGG 2 cut(s) 112, 153
BclI TGATCA 2 cut(s) 285, 1081
BcuI ACTAGT 1 cut(s) 367
BfaI CTAG 2 cut(s) 74, 368
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 5 cut(s) 363, 428, 431, 639, 1013
BlpI GCTNAGC 1 cut(s) 458
BlsI GCNGC 5 cut(s) 364, 429, 432, 640, 1014
BmcAI AGTACT 1 cut(s) 930
Bme1390I CCNGG 2 cut(s) 112, 153
Bme18I GGWCC 4 cut(s) 108, 155, 404, 413
BmeT110I CYCGRG 1 cut(s) 1032
BmgT120I GGNCC 5 cut(s) 108, 155, 242, 404, 413
BmiI GGNNCC 4 cut(s) 101, 199, 406, 1073
BmrFI CCNGG 2 cut(s) 112, 153
BmrI ACTGGG 1 cut(s) 1060
BmsI GCATC 3 cut(s) 13, 444, 999
BmuI ACTGGG 1 cut(s) 1060
BpmI CTGGAG 1 cut(s) 669
Bpu10I CCTNAGC 1 cut(s) 642
Bpu1102I GCTNAGC 1 cut(s) 458
Bpu14I TTCGAA 1 cut(s) 661
Bsa29I ATCGAT 1 cut(s) 902
BsaBI GATNNNNATC 1 cut(s) 45
BsaJI CCNNGG 2 cut(s) 262, 828
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 194, 1051
Bse1I ACTGG 2 cut(s) 679, 1055
Bse3DI GCAATG 1 cut(s) 143
Bse8I GATNNNNATC 1 cut(s) 45
BseBI CCWGG 2 cut(s) 112, 153
BseCI ATCGAT 1 cut(s) 902
BseDI CCNNGG 2 cut(s) 262, 828
BseGI GGATG 1 cut(s) 825
BseJI GATNNNNATC 1 cut(s) 45
BseLI CCNNNNNNNGG 3 cut(s) 176, 194, 1051
BseMI GCAATG 1 cut(s) 143
BseMII CTCAG 5 cut(s) 213, 633, 645, 930, 1029
BseNI ACTGG 2 cut(s) 679, 1055
BseXI GCAGC 4 cut(s) 349, 417, 650, 999
BsgI GTGCAG 2 cut(s) 348, 708
Bsh1236I CGCG 1 cut(s) 1029
BshFI GGCC 2 cut(s) 243, 833
BshNI GGYRCC 1 cut(s) 197
BshVI ATCGAT 1 cut(s) 902
BsiHKAI GWGCWC 2 cut(s) 125, 979
BsiHKCI CYCGRG 1 cut(s) 1032
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 3 cut(s) 176, 194, 1051
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 2 cut(s) 243, 833
BsoBI CYCGRG 1 cut(s) 1032
Bsp119I TTCGAA 1 cut(s) 661
Bsp1286I GDGCHC 2 cut(s) 125, 979
Bsp1407I TGTACA 1 cut(s) 742
Bsp143I GATC 2 cut(s) 285, 1081
Bsp1720I GCTNAGC 1 cut(s) 458
BspACI CCGC 2 cut(s) 259, 427
BspANI GGCC 2 cut(s) 243, 833
BspCNI CTCAG 5 cut(s) 214, 634, 646, 931, 1030
BspDI ATCGAT 1 cut(s) 902
BspFNI CGCG 1 cut(s) 1029
BspHI TCATGA 1 cut(s) 883
BspLI GGNNCC 4 cut(s) 101, 199, 406, 1073
BspT104I TTCGAA 1 cut(s) 661
BspT107I GGYRCC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 143
BsrGI TGTACA 1 cut(s) 742
BsrI ACTGG 2 cut(s) 679, 1055
BssECI CCNNGG 2 cut(s) 262, 828
BssMI GATC 2 cut(s) 285, 1081
BssNAI GTATAC 1 cut(s) 825
BssT1I CCWWGG 1 cut(s) 828
Bst1107I GTATAC 1 cut(s) 825
Bst2UI CCWGG 2 cut(s) 112, 153
Bst4CI ACNGT 2 cut(s) 334, 413
Bst6I CTCTTC 1 cut(s) 953
BstAUI TGTACA 1 cut(s) 742
BstBI TTCGAA 1 cut(s) 661
BstC8I GCNNGC 1 cut(s) 1017
BstDEI CTNAG 8 cut(s) 193, 222, 458, 491, 642, 654, 939, 1038
BstEII GGTNACC 1 cut(s) 781
BstF5I GGATG 1 cut(s) 825
BstFNI CGCG 1 cut(s) 1029
BstHHI GCGC 2 cut(s) 435, 1031
BstKTI GATC 2 cut(s) 288, 1084
BstMBI GATC 2 cut(s) 285, 1081
BstMWI GCNNNNNNNGC 3 cut(s) 74, 267, 644
BstNI CCWGG 2 cut(s) 112, 153
BstPI GGTNACC 1 cut(s) 781
BstSCI CCNGG 2 cut(s) 110, 151
BstSFI CTRYAG 1 cut(s) 159
BstUI CGCG 1 cut(s) 1029
BstV1I GCAGC 4 cut(s) 349, 417, 650, 999
BstZ17I GTATAC 1 cut(s) 825
Bsu15I ATCGAT 1 cut(s) 902
BsuRI GGCC 2 cut(s) 243, 833
BsuTUI ATCGAT 1 cut(s) 902
BtgZI GCGATG 1 cut(s) 379
BtsCI GGATG 1 cut(s) 825
BtsI GCAGTG 1 cut(s) 675
BtsIMutI CAGTG 3 cut(s) 219, 330, 675
Cac8I GCNNGC 1 cut(s) 1017
CaiI CAGNNNCTG 1 cut(s) 674
CciI TCATGA 1 cut(s) 883
CfoI GCGC 2 cut(s) 435, 1031
Cfr13I GGNCC 5 cut(s) 108, 155, 242, 404, 413
ClaI ATCGAT 1 cut(s) 902
Csp6I GTAC 4 cut(s) 18, 743, 801, 929
CviAII CATG 8 cut(s) 12, 212, 326, 347, 595, 601, 884, 995
CviQI GTAC 4 cut(s) 18, 743, 801, 929
DdeI CTNAG 8 cut(s) 193, 222, 458, 491, 642, 654, 939, 1038
DpnI GATC 2 cut(s) 287, 1083
DpnII GATC 2 cut(s) 285, 1081
DrdI GACNNNNNNGTC 1 cut(s) 411
DseDI GACNNNNNNGTC 1 cut(s) 411
EaeI YGGCCR 1 cut(s) 831
Eam1104I CTCTTC 1 cut(s) 953
EarI CTCTTC 1 cut(s) 953
EciI GGCGGA 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 828
Eco47I GGWCC 4 cut(s) 108, 155, 404, 413
Eco57I CTGAAG 1 cut(s) 941
Eco88I CYCGRG 1 cut(s) 1032
Eco91I GGTNACC 1 cut(s) 781
EcoO109I RGGNCCY 1 cut(s) 155
EcoO65I GGTNACC 1 cut(s) 781
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 2 cut(s) 110, 151
EcoT14I CCWWGG 1 cut(s) 828
ErhI CCWWGG 1 cut(s) 828
FaeI CATG 8 cut(s) 15, 215, 329, 350, 598, 604, 887, 998
FaqI GGGAC 1 cut(s) 404
FatI CATG 8 cut(s) 11, 211, 325, 346, 594, 600, 883, 994
FauNDI CATATG 1 cut(s) 379
FbaI TGATCA 2 cut(s) 285, 1081
FblI GTMKAC 1 cut(s) 824
Fnu4HI GCNGC 5 cut(s) 363, 428, 431, 639, 1013
FokI GGATG 1 cut(s) 832
Fsp4HI GCNGC 5 cut(s) 363, 428, 431, 639, 1013
FspBI CTAG 2 cut(s) 74, 368
FspI TGCGCA 1 cut(s) 434
GlaI GCGC 2 cut(s) 434, 1030
GluI GCNGC 5 cut(s) 363, 428, 431, 639, 1013
GsuI CTGGAG 1 cut(s) 669
HaeIII GGCC 2 cut(s) 243, 833
HhaI GCGC 2 cut(s) 435, 1031
Hin1II CATG 8 cut(s) 15, 215, 329, 350, 598, 604, 887, 998
Hin6I GCGC 2 cut(s) 433, 1029
HinP1I GCGC 2 cut(s) 433, 1029
HindIII AAGCTT 2 cut(s) 770, 1124
HphI GGTGA 3 cut(s) 200, 793, 851
Hpy166II GTNNAC 2 cut(s) 508, 825
Hpy188I TCNGA 3 cut(s) 266, 306, 712
Hpy188III TCNNGA 3 cut(s) 320, 416, 884
Hpy8I GTNNAC 2 cut(s) 508, 825
HpyAV CCTTC 5 cut(s) 80, 194, 199, 215, 916
HpyCH4III ACNGT 2 cut(s) 334, 413
HpyCH4IV ACGT 1 cut(s) 591
HpyCH4V TGCA 6 cut(s) 365, 581, 725, 859, 896, 913
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 267, 644
HpyF3I CTNAG 8 cut(s) 193, 222, 458, 491, 642, 654, 939, 1038
HpySE526I ACGT 1 cut(s) 591
Hsp92II CATG 8 cut(s) 15, 215, 329, 350, 598, 604, 887, 998
HspAI GCGC 2 cut(s) 433, 1029
Ksp22I TGATCA 2 cut(s) 285, 1081
Kzo9I GATC 2 cut(s) 285, 1081
LmnI GCTCC 3 cut(s) 383, 650, 685
Lsp1109I GCAGC 4 cut(s) 349, 417, 650, 999
LweI GCATC 3 cut(s) 13, 444, 999
MaeI CTAG 2 cut(s) 74, 368
MaeII ACGT 1 cut(s) 591
MaeIII GTNAC 3 cut(s) 320, 670, 781
MalI GATC 2 cut(s) 287, 1083
MboI GATC 2 cut(s) 285, 1081
MboII GAAGA 5 cut(s) 507, 899, 970, 1013, 1076
MfeI CAATTG 1 cut(s) 516
MhlI GDGCHC 2 cut(s) 125, 979
MlsI TGGCCA 1 cut(s) 833
MluCI AATT 6 cut(s) 215, 272, 516, 537, 750, 860
MluNI TGGCCA 1 cut(s) 833
Mox20I TGGCCA 1 cut(s) 833
MroXI GAANNNNTTC 1 cut(s) 315
MscI TGGCCA 1 cut(s) 833
MseI TTAA 2 cut(s) 623, 954
MslI CAYNNNNRTG 2 cut(s) 599, 882
Msp20I TGGCCA 1 cut(s) 833
MspA1I CMGCKG 2 cut(s) 362, 641
MspR9I CCNGG 2 cut(s) 112, 153
MunI CAATTG 1 cut(s) 516
MvaI CCWGG 2 cut(s) 112, 153
MvnI CGCG 1 cut(s) 1029
MwoI GCNNNNNNNGC 3 cut(s) 74, 267, 644
NdeI CATATG 1 cut(s) 379
NdeII GATC 2 cut(s) 285, 1081
NlaIII CATG 8 cut(s) 15, 215, 329, 350, 598, 604, 887, 998
NlaIV GGNNCC 4 cut(s) 101, 199, 406, 1073
NmuCI GTSAC 3 cut(s) 320, 670, 781
NsbI TGCGCA 1 cut(s) 434
NspV TTCGAA 1 cut(s) 661
PagI TCATGA 1 cut(s) 883
PdmI GAANNNNTTC 1 cut(s) 315
PflMI CCANNNNNTGG 1 cut(s) 176
PfoI TCCNGGA 1 cut(s) 110
PkrI GCNGC 5 cut(s) 364, 429, 432, 640, 1014
PpuMI RGGWCCY 1 cut(s) 155
Psp5II RGGWCCY 1 cut(s) 155
Psp6I CCWGG 2 cut(s) 110, 151
PspEI GGTNACC 1 cut(s) 781
PspGI CCWGG 2 cut(s) 110, 151
PspN4I GGNNCC 4 cut(s) 101, 199, 406, 1073
PspPI GGNCC 5 cut(s) 108, 155, 242, 404, 413
PspPPI RGGWCCY 1 cut(s) 155
PstNI CAGNNNCTG 1 cut(s) 674
PvuII CAGCTG 2 cut(s) 362, 641
RsaI GTAC 4 cut(s) 19, 744, 802, 930
RsaNI GTAC 4 cut(s) 18, 743, 801, 929
RseI CAYNNNNRTG 2 cut(s) 599, 882
SaqAI TTAA 2 cut(s) 623, 954
SatI GCNGC 5 cut(s) 363, 428, 431, 639, 1013
Sau3AI GATC 2 cut(s) 285, 1081
Sau96I GGNCC 5 cut(s) 108, 155, 242, 404, 413
ScaI AGTACT 1 cut(s) 930
ScrFI CCNGG 2 cut(s) 112, 153
SduI GDGCHC 2 cut(s) 125, 979
SfaNI GCATC 3 cut(s) 13, 444, 999
SfcI CTRYAG 1 cut(s) 159
SfuI TTCGAA 1 cut(s) 661
SinI GGWCC 4 cut(s) 108, 155, 404, 413
SmiMI CAYNNNNRTG 2 cut(s) 599, 882
SpeI ACTAGT 1 cut(s) 367
Sse9I AATT 6 cut(s) 215, 272, 516, 537, 750, 860
SsiI CCGC 2 cut(s) 259, 427
SspI AATATT 2 cut(s) 60, 706
SspMI CTAG 2 cut(s) 74, 368
StyD4I CCNGG 2 cut(s) 110, 151
StyI CCWWGG 1 cut(s) 828
TaaI ACNGT 2 cut(s) 334, 413
TaiI ACGT 1 cut(s) 594
TaqI TCGA 3 cut(s) 575, 661, 902
TaqII GACCGA 1 cut(s) 800
TasI AATT 6 cut(s) 215, 272, 516, 537, 750, 860
TatI WGTACW 2 cut(s) 742, 928
TauI GCSGC 1 cut(s) 430
Tru1I TTAA 2 cut(s) 623, 954
Tru9I TTAA 2 cut(s) 623, 954
TscAI CASTG 3 cut(s) 226, 337, 675
TseFI GTSAC 3 cut(s) 320, 670, 781
TseI GCWGC 4 cut(s) 362, 430, 638, 1012
Tsp45I GTSAC 3 cut(s) 320, 670, 781
TspDTI ATGAA 3 cut(s) 57, 228, 900
TspGWI ACGGA 1 cut(s) 832
TspRI CASTG 3 cut(s) 226, 337, 675
Van91I CCANNNNNTGG 1 cut(s) 176
VpaK11BI GGWCC 4 cut(s) 108, 155, 404, 413
XapI RAATTY 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 824
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 2 cut(s) 74, 368
ZrmI AGTACT 1 cut(s) 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.