Rorug07G0232900

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
21372997 .. 21373476
480 bp
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UTR
Exon/CDS
Intron
Rorug07G0232900.1

Sequence Viewer

Length: 480 bp
ATGAAGGTTGTCCTCCCAAGAAACACTACCATCCCCACCAAGAAAGAAATAGTTGTCACAAATGTCCACGCTGGACAAGTATGGATGAAGTTTAAAGTGTATGAGGGTGAAAGCGCAGTAGCTAAAGGTAACACATTGTTGGGTATTTTTGAGCTCAACGGCATCCGTCCTGCTCCAAGGGCAACATCTCAGGTCACCCTTTGCTTTGAGATAGATGCCAACGGAATTATGGTTGTCTCTGCTGAGGAAAAGTCAACGCGGAATAAGAGCAAGATTACAATCACCAATAACAACAAAAGCAAGTTTTCCGAGGAAGAAATTGAGAATATGATCATGGAGGCAAAGAAATACAAGTTCGAGGACAAAGAGAATAAGACAATGGAGGCTAAGCTTGCATTGAAAGATTATGCATCCAACATGATGGACACAGTTTCTAACATCCCAAATCTCAACGAAGCAGACAAGACACAATTATTGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

159

Amino Acids

17.86

Weight (kDa)

8.56

Isoelectric Point (pI)

24.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 3 - 155 1.4e-32 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 259
AciI CCGC 1 cut(s) 259
AgsI TTSAA 1 cut(s) 400
AluBI AGCT 3 cut(s) 122, 154, 391
AluI AGCT 3 cut(s) 122, 154, 391
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 241
AspLEI GCGC 1 cut(s) 116
AsuHPI GGTGA 3 cut(s) 119, 187, 274
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 243
BccI CCATC 2 cut(s) 38, 415
BceAI ACGGC 1 cut(s) 175
BclI TGATCA 1 cut(s) 330
BcoDI GTCTC 1 cut(s) 241
BlpI GCTNAGC 1 cut(s) 387
BmsI GCATC 3 cut(s) 171, 205, 419
Bpu10I CCTNAGC 1 cut(s) 243
Bpu1102I GCTNAGC 1 cut(s) 387
BsaBI GATNNNNATC 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 176, 309
Bse8I GATNNNNATC 1 cut(s) 278
BseDI CCNNGG 2 cut(s) 176, 309
BseGI GGATG 5 cut(s) 30, 90, 162, 410, 438
BseJI GATNNNNATC 1 cut(s) 278
BseMII CTCAG 2 cut(s) 203, 234
Bsh1236I CGCG 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 330
Bsp1720I GCTNAGC 1 cut(s) 387
BspACI CCGC 1 cut(s) 259
BspCNI CTCAG 2 cut(s) 202, 235
BspFNI CGCG 1 cut(s) 259
BssECI CCNNGG 2 cut(s) 176, 309
BssMI GATC 1 cut(s) 330
BssT1I CCWWGG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 430
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 3 cut(s) 189, 243, 387
BstEII GGTNACC 1 cut(s) 193
BstF5I GGATG 5 cut(s) 30, 90, 162, 410, 438
BstFNI CGCG 1 cut(s) 259
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 1 cut(s) 333
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 1 cut(s) 330
BstMWI GCNNNNNNNGC 2 cut(s) 179, 392
BstPI GGTNACC 1 cut(s) 193
BstUI CGCG 1 cut(s) 259
BstXI CCANNNNNNTGG 1 cut(s) 421
BtsCI GGATG 5 cut(s) 30, 90, 162, 410, 438
Cac8I GCNNGC 1 cut(s) 393
CfoI GCGC 1 cut(s) 116
CviAII CATG 2 cut(s) 334, 418
CviJI RGCY 4 cut(s) 122, 154, 386, 391
CviKI_1 RGCY 4 cut(s) 122, 154, 386, 391
DdeI CTNAG 3 cut(s) 189, 243, 387
DpnI GATC 1 cut(s) 332
DpnII GATC 1 cut(s) 330
DraI TTTAAA 1 cut(s) 94
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 154
Eco91I GGTNACC 1 cut(s) 193
EcoICRI GAGCTC 1 cut(s) 154
EcoO65I GGTNACC 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 176
EcoT22I ATGCAT 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 2 cut(s) 337, 421
FaiI YATR 7 cut(s) 82, 102, 230, 329, 335, 408, 419
FatI CATG 2 cut(s) 333, 417
FbaI TGATCA 1 cut(s) 330
FokI GGATG 5 cut(s) 17, 97, 149, 397, 425
FriOI GRGCYC 1 cut(s) 156
GlaI GCGC 1 cut(s) 115
HhaI GCGC 1 cut(s) 116
Hin1II CATG 2 cut(s) 337, 421
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HindIII AAGCTT 1 cut(s) 389
HphI GGTGA 3 cut(s) 119, 187, 274
Hpy166II GTNNAC 2 cut(s) 67, 255
Hpy188I TCNGA 1 cut(s) 310
Hpy8I GTNNAC 2 cut(s) 67, 255
HpyCH4III ACNGT 1 cut(s) 430
HpyCH4V TGCA 2 cut(s) 395, 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 392
HpyF3I CTNAG 3 cut(s) 189, 243, 387
Hsp92II CATG 2 cut(s) 337, 421
HspAI GCGC 1 cut(s) 114
Ksp22I TGATCA 1 cut(s) 330
Kzo9I GATC 1 cut(s) 330
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 3 cut(s) 57, 176, 183
LweI GCATC 3 cut(s) 171, 205, 419
MaeIII GTNAC 3 cut(s) 55, 128, 193
MalI GATC 1 cut(s) 332
MboI GATC 1 cut(s) 330
MboII GAAGA 1 cut(s) 326
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 3 cut(s) 225, 318, 470
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 7 cut(s) 23, 97, 238, 304, 331, 352, 376
Mph1103I ATGCAT 1 cut(s) 412
MseI TTAA 1 cut(s) 93
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 2 cut(s) 179, 392
NdeII GATC 1 cut(s) 330
NlaIII CATG 2 cut(s) 337, 421
NmuCI GTSAC 2 cut(s) 55, 193
NsiI ATGCAT 1 cut(s) 412
Psp124BI GAGCTC 1 cut(s) 156
PspEI GGTNACC 1 cut(s) 193
SacI GAGCTC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 93
Sau3AI GATC 1 cut(s) 330
SduI GDGCHC 1 cut(s) 156
SetI ASST 6 cut(s) 9, 124, 130, 156, 195, 393
SfaNI GCATC 3 cut(s) 171, 205, 419
Sse9I AATT 3 cut(s) 225, 318, 470
SsiI CCGC 1 cut(s) 259
SstI GAGCTC 1 cut(s) 156
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 430
TaqI TCGA 1 cut(s) 357
TasI AATT 3 cut(s) 225, 318, 470
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TseFI GTSAC 2 cut(s) 55, 193
Tsp45I GTSAC 2 cut(s) 55, 193
TspDTI ATGAA 2 cut(s) 17, 101
TspGWI ACGGA 2 cut(s) 155, 237
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.