RchiOBHm_Chr7g0225731

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000490
Physical Location & Seq
Forward (+)
48590168 .. 48590788
621 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20218

Sequence Viewer

Length: 576 bp
ATGGTGGGTGGAACTGACACTACGGCAACAATAGGGGAATGGGTTCTGACTGAGCTGATGCAGCACCCAGAAGAAATGATAAGAGTTCAAGAAGAACTAACACAAATTGTGGGGTTGAACAACTTGGTTGAAGAGTTTCATTTGCCGAAATTACATCACTTAGATGCTGTGATCAAGGAGACATTTCGCTTGCACCCTCCAGTGCCCCTTCTTGTGCCCCGGCGTTCCACTATTTTTCTCAATGCTTGGGCCATACACAGAGATCCAAGTGTTTGGGATGATCCCTTGGAATTTAGACCCCAGAGGTTCCTAAATCCAAGCAATAGCTTTGATTACCAGGGCAACAAATTTCAATTTCTTCCATTTGGTTCTGGGAGGAGAATATGTGCCGGGATTCCCTTAGCAGAGAGGATGATGTTCTATGTGTTGGCTTCATTCTTGCATTCGTTTGATTGGAAATTGCCTAATGACAAAAAGCTTGACGTTTCAGACAAATTTGGGATTGTGACAAAGAAAAACACTCCACTTATTGCTGTACCAACACCCAGGTTATCTAATTTGGAGCTCTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

191

Amino Acids

21.99

Weight (kDa)

6.38

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 76 1.5e-20 Cytochrome P450
p450 PF00067 77 - 174 1.3e-29 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 257, 275
AcsI RAATTY 3 cut(s) 290, 347, 494
AfaI GTAC 1 cut(s) 537
AgsI TTSAA 4 cut(s) 89, 118, 131, 353
AjnI CCWGG 2 cut(s) 336, 545
AluBI AGCT 4 cut(s) 55, 327, 478, 565
AluI AGCT 4 cut(s) 55, 327, 478, 565
Alw21I GWGCWC 1 cut(s) 567
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 2 cut(s) 257, 275
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 1 cut(s) 61
ApoI RAATTY 3 cut(s) 290, 347, 494
Asp700I GAANNNNTTC 2 cut(s) 42, 135
AspS9I GGNCC 1 cut(s) 249
AsuC2I CCSGG 2 cut(s) 220, 391
BaeGI GKGCMC 2 cut(s) 207, 219
BanII GRGCYC 1 cut(s) 567
Bbv12I GWGCWC 1 cut(s) 567
BbvI GCAGC 1 cut(s) 73
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 2 cut(s) 338, 547
BclI TGATCA 1 cut(s) 171
BcnI CCSGG 2 cut(s) 220, 391
BcoDI GTCTC 1 cut(s) 173
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
Bme1390I CCNGG 4 cut(s) 220, 338, 391, 547
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 1 cut(s) 308
BmrFI CCNGG 4 cut(s) 220, 338, 391, 547
BmsI GCATC 2 cut(s) 48, 154
BpmI CTGGAG 1 cut(s) 183
Bpu10I CCTNAGC 1 cut(s) 400
BpuMI CCSGG 2 cut(s) 220, 391
BsaJI CCNNGG 4 cut(s) 218, 285, 337, 545
BsaXI ACNNNNNCTCC 2 cut(s) 370, 400
Bse1I ACTGG 1 cut(s) 200
BseBI CCWGG 2 cut(s) 338, 547
BseDI CCNNGG 4 cut(s) 218, 285, 337, 545
BseGI GGATG 2 cut(s) 283, 417
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 391
BseSI GKGCMC 2 cut(s) 207, 219
BseXI GCAGC 1 cut(s) 73
BshFI GGCC 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 567
BsiSI CCGG 2 cut(s) 220, 390
BsmAI GTCTC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 442
BsnI GGCC 1 cut(s) 251
Bsp1286I GDGCHC 3 cut(s) 207, 219, 567
Bsp143I GATC 3 cut(s) 171, 262, 280
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 308
BspPI GGATC 2 cut(s) 257, 275
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 4 cut(s) 218, 285, 337, 545
BssMI GATC 3 cut(s) 171, 262, 280
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 2 cut(s) 338, 547
Bst6I CTCTTC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 3 cut(s) 51, 160, 400
BstF5I GGATG 2 cut(s) 283, 417
BstKTI GATC 3 cut(s) 174, 265, 283
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 3 cut(s) 171, 262, 280
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstNI CCWGG 2 cut(s) 338, 547
BstSCI CCNGG 4 cut(s) 218, 336, 389, 545
BstSLI GKGCMC 2 cut(s) 207, 219
BstV1I GCAGC 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 273
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 1 cut(s) 251
BtsCI GGATG 2 cut(s) 283, 417
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 249
Csp6I GTAC 1 cut(s) 536
CviJI RGCY 6 cut(s) 55, 251, 327, 431, 478, 565
CviKI_1 RGCY 6 cut(s) 55, 251, 327, 431, 478, 565
CviQI GTAC 1 cut(s) 536
DdeI CTNAG 3 cut(s) 51, 160, 400
DpnI GATC 3 cut(s) 173, 264, 282
DpnII GATC 3 cut(s) 171, 262, 280
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Ecl136II GAGCTC 1 cut(s) 565
Eco130I CCWWGG 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 567
Eco53kI GAGCTC 1 cut(s) 565
EcoICRI GAGCTC 1 cut(s) 565
EcoRII CCWGG 2 cut(s) 336, 545
EcoT14I CCWWGG 1 cut(s) 285
EcoT38I GRGCYC 1 cut(s) 567
ErhI CCWWGG 1 cut(s) 285
FaiI YATR 4 cut(s) 254, 385, 423, 570
FbaI TGATCA 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 62
FokI GGATG 2 cut(s) 290, 424
FriOI GRGCYC 1 cut(s) 567
Fsp4HI GCNGC 1 cut(s) 62
GluI GCNGC 1 cut(s) 62
GsuI CTGGAG 1 cut(s) 183
HaeIII GGCC 1 cut(s) 251
HapII CCGG 2 cut(s) 220, 390
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 1 cut(s) 394
HpaII CCGG 2 cut(s) 220, 390
Hpy188I TCNGA 2 cut(s) 48, 490
Hpy188III TCNNGA 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 3 cut(s) 61, 193, 442
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 3 cut(s) 51, 160, 400
HpySE526I ACGT 1 cut(s) 483
Ksp22I TGATCA 1 cut(s) 171
Kzo9I GATC 3 cut(s) 171, 262, 280
LmnI GCTCC 1 cut(s) 562
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 2 cut(s) 48, 154
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 1 cut(s) 505
MalI GATC 3 cut(s) 173, 264, 282
MboI GATC 3 cut(s) 171, 262, 280
MboII GAAGA 4 cut(s) 83, 104, 143, 350
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 3 cut(s) 207, 219, 567
MluCI AATT 8 cut(s) 105, 149, 290, 347, 353, 458, 494, 556
MnlI CCTC 4 cut(s) 207, 297, 369, 402
MroXI GAANNNNTTC 2 cut(s) 42, 135
MseI TTAA 1 cut(s) 574
MslI CAYNNNNRTG 1 cut(s) 162
MspI CCGG 2 cut(s) 220, 390
MspR9I CCNGG 4 cut(s) 220, 338, 391, 547
Mva1269I GAATGC 1 cut(s) 442
MvaI CCWGG 2 cut(s) 338, 547
MwoI GCNNNNNNNGC 1 cut(s) 61
NciI CCSGG 2 cut(s) 220, 391
NdeII GATC 3 cut(s) 171, 262, 280
NlaIV GGNNCC 1 cut(s) 308
NmuCI GTSAC 1 cut(s) 505
PctI GAATGC 1 cut(s) 442
PdmI GAANNNNTTC 2 cut(s) 42, 135
PfeI GAWTC 1 cut(s) 394
PkrI GCNGC 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 567
Psp6I CCWGG 2 cut(s) 336, 545
PspGI CCWGG 2 cut(s) 336, 545
PspN4I GGNNCC 1 cut(s) 308
PspPI GGNCC 1 cut(s) 249
PsrI GAACNNNNNNTAC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 1 cut(s) 537
RsaNI GTAC 1 cut(s) 536
RseI CAYNNNNRTG 1 cut(s) 162
SacI GAGCTC 1 cut(s) 567
SaqAI TTAA 1 cut(s) 574
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 3 cut(s) 171, 262, 280
Sau96I GGNCC 1 cut(s) 249
ScrFI CCNGG 4 cut(s) 220, 338, 391, 547
SduI GDGCHC 3 cut(s) 207, 219, 567
SetI ASST 7 cut(s) 57, 308, 329, 480, 486, 551, 567
SfaNI GCATC 2 cut(s) 48, 154
SmiMI CAYNNNNRTG 1 cut(s) 162
Sse9I AATT 8 cut(s) 105, 149, 290, 347, 353, 458, 494, 556
SstI GAGCTC 1 cut(s) 567
StyD4I CCNGG 4 cut(s) 218, 336, 389, 545
StyI CCWWGG 1 cut(s) 285
TaiI ACGT 1 cut(s) 486
TasI AATT 8 cut(s) 105, 149, 290, 347, 353, 458, 494, 556
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 1 cut(s) 574
Tru9I TTAA 1 cut(s) 574
TscAI CASTG 1 cut(s) 207
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 2 cut(s) 128, 423
TspRI CASTG 1 cut(s) 207
XapI RAATTY 3 cut(s) 290, 347, 494
XmnI GAANNNNTTC 2 cut(s) 42, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.