Rh5CG585000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000490
Physical Location & Seq
Reverse (-)
82907792 .. 82908345
554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG585000.1

Sequence Viewer

Length: 390 bp
ATGATACTCCAAAGAGTAGAGCACAAACCAGAGTCAATTGACAATCCACTTGCCTTCCTCTTGCCCTTCAACAGTGGGAAGCACCACGCGCTGAGCTCCTTTCTGCTTTTGCTTAGACTACTCGGCTTGGGCGATGTTCTTGCCGTGCCAGGTGGACCTTCCGGTGGCGAGGACCATGAAATCGGCCCACTCGCAGTGCTTGTTCGCCGGTATGACCTTGACGTCGTCGGCCTTGACTTCGCTGAGAACCGTTTCGACCTCCTGGAGATCAAGCAGGCCTTCCTTGGCTGCGGAGGAGGAGAAGGCCTAGTGCAGAGATGGAAACCCTGGCCTCCATTGTCGAAGAAGGCAGTGAGGACGACGATCGGGAGCGTAGAGCGGCTAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.1

Weight (kDa)

6.41

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 221
AatII GACGTC 1 cut(s) 225
AccBSI CCGCTC 1 cut(s) 379
AccII CGCG 1 cut(s) 89
AciI CCGC 2 cut(s) 291, 379
AcyI GRCGYC 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 1 cut(s) 70
AjnI CCWGG 3 cut(s) 148, 261, 326
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
Alw21I GWGCWC 2 cut(s) 24, 98
AoxI GGCC 5 cut(s) 184, 229, 276, 304, 329
ApeKI GCWGC 1 cut(s) 288
Asp700I GAANNNNTTC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 3 cut(s) 155, 172, 185
AvaII GGWCC 2 cut(s) 155, 172
BanII GRGCYC 1 cut(s) 98
Bbv12I GWGCWC 2 cut(s) 24, 98
BbvI GCAGC 1 cut(s) 275
BccI CCATC 1 cut(s) 312
BceAI ACGGC 1 cut(s) 128
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 3 cut(s) 150, 263, 328
BfaI CTAG 1 cut(s) 308
BisI GCNGC 2 cut(s) 289, 380
BlpI GCTNAGC 1 cut(s) 92
BlsI GCNGC 2 cut(s) 290, 381
Bme1390I CCNGG 3 cut(s) 150, 263, 328
Bme18I GGWCC 2 cut(s) 155, 172
BmgT120I GGNCC 3 cut(s) 155, 172, 185
BmrFI CCNGG 3 cut(s) 150, 263, 328
BpmI CTGGAG 1 cut(s) 284
Bpu1102I GCTNAGC 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 283, 326
BsaWI WCCGGW 1 cut(s) 161
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse118I RCCGGY 1 cut(s) 207
BseBI CCWGG 3 cut(s) 150, 263, 328
BseDI CCNNGG 2 cut(s) 283, 326
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMII CTCAG 2 cut(s) 83, 234
BseRI GAGGAG 2 cut(s) 309, 312
BseXI GCAGC 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 332
Bsh1236I CGCG 1 cut(s) 89
Bsh1285I CGRYCG 1 cut(s) 366
BshFI GGCC 5 cut(s) 186, 231, 278, 306, 331
BsiEI CGRYCG 1 cut(s) 366
BsiHKAI GWGCWC 2 cut(s) 24, 98
BsiSI CCGG 2 cut(s) 162, 208
BslI CCNNNNNNNGG 1 cut(s) 164
BsnI GGCC 5 cut(s) 186, 231, 278, 306, 331
Bsp1286I GDGCHC 2 cut(s) 24, 98
Bsp143I GATC 2 cut(s) 267, 363
Bsp1720I GCTNAGC 1 cut(s) 92
BspACI CCGC 2 cut(s) 291, 379
BspANI GGCC 5 cut(s) 186, 231, 278, 306, 331
BspCNI CTCAG 2 cut(s) 84, 235
BspFNI CGCG 1 cut(s) 89
BsrBI CCGCTC 1 cut(s) 379
BsrFI RCCGGY 1 cut(s) 207
BssAI RCCGGY 1 cut(s) 207
BssECI CCNNGG 2 cut(s) 283, 326
BssMI GATC 2 cut(s) 267, 363
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 283
Bst2UI CCWGG 3 cut(s) 150, 263, 328
Bst4CI ACNGT 2 cut(s) 74, 251
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 3 cut(s) 92, 113, 243
BstFNI CGCG 1 cut(s) 89
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 2 cut(s) 270, 366
BstMBI GATC 2 cut(s) 267, 363
BstMCI CGRYCG 1 cut(s) 366
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNI CCWGG 3 cut(s) 150, 263, 328
BstSCI CCNGG 3 cut(s) 148, 261, 326
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 275
BsuRI GGCC 5 cut(s) 186, 231, 278, 306, 331
BtgZI GCGATG 1 cut(s) 147
BtsI GCAGTG 2 cut(s) 201, 357
BtsIMutI CAGTG 3 cut(s) 79, 201, 357
Cac8I GCNNGC 1 cut(s) 276
CfoI GCGC 1 cut(s) 91
Cfr10I RCCGGY 1 cut(s) 207
Cfr13I GGNCC 3 cut(s) 155, 172, 185
CviAII CATG 2 cut(s) 176, 387
CviJI RGCY 9 cut(s) 96, 126, 186, 231, 278, 288, 306, 331, 382
CviKI_1 RGCY 9 cut(s) 96, 126, 186, 231, 278, 288, 306, 331, 382
DdeI CTNAG 3 cut(s) 92, 113, 243
DpnI GATC 2 cut(s) 269, 365
DpnII GATC 2 cut(s) 267, 363
DrdI GACNNNNNNGTC 1 cut(s) 221
DseDI GACNNNNNNGTC 1 cut(s) 221
Ecl136II GAGCTC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 283
Eco147I AGGCCT 2 cut(s) 278, 306
Eco24I GRGCYC 1 cut(s) 98
Eco47I GGWCC 2 cut(s) 155, 172
Eco53kI GAGCTC 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 96
EcoRII CCWGG 3 cut(s) 148, 261, 326
EcoT14I CCWWGG 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 2 cut(s) 179, 390
FaiI YATR 3 cut(s) 177, 213, 388
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FatI CATG 2 cut(s) 175, 386
Fnu4HI GCNGC 2 cut(s) 289, 380
FriOI GRGCYC 1 cut(s) 98
Fsp4HI GCNGC 2 cut(s) 289, 380
FspBI CTAG 1 cut(s) 308
GlaI GCGC 1 cut(s) 90
GluI GCNGC 2 cut(s) 289, 380
GsuI CTGGAG 1 cut(s) 284
HaeIII GGCC 5 cut(s) 186, 231, 278, 306, 331
HapII CCGG 2 cut(s) 162, 208
HhaI GCGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 2 cut(s) 179, 390
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HinfI GANTC 1 cut(s) 32
HpaII CCGG 2 cut(s) 162, 208
Hpy166II GTNNAC 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 367
Hpy8I GTNNAC 1 cut(s) 155
Hpy99I CGWCG 3 cut(s) 227, 230, 364
HpyAV CCTTC 6 cut(s) 64, 76, 168, 289, 296, 340
HpyCH4III ACNGT 2 cut(s) 74, 251
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 1 cut(s) 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 3 cut(s) 92, 113, 243
HpySE526I ACGT 1 cut(s) 222
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 2 cut(s) 179, 390
HspAI GCGC 1 cut(s) 89
Kzo9I GATC 2 cut(s) 267, 363
LmnI GCTCC 2 cut(s) 101, 369
Lsp1109I GCAGC 1 cut(s) 275
MaeI CTAG 1 cut(s) 308
MaeII ACGT 1 cut(s) 222
MalI GATC 2 cut(s) 269, 365
MbiI CCGCTC 1 cut(s) 379
MboI GATC 2 cut(s) 267, 363
MboII GAAGA 1 cut(s) 355
MfeI CAATTG 1 cut(s) 36
MhlI GDGCHC 2 cut(s) 24, 98
MluCI AATT 1 cut(s) 36
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 7 cut(s) 68, 163, 269, 287, 290, 342, 348
MroXI GAANNNNTTC 1 cut(s) 251
MspI CCGG 2 cut(s) 162, 208
MspR9I CCNGG 3 cut(s) 150, 263, 328
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 3 cut(s) 150, 263, 328
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 88
NdeII GATC 2 cut(s) 267, 363
NlaIII CATG 2 cut(s) 179, 390
NmeAIII GCCGAG 1 cut(s) 102
PceI AGGCCT 2 cut(s) 278, 306
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 251
PflFI GACNNNGTC 1 cut(s) 224
PfoI TCCNGGA 1 cut(s) 261
PkrI GCNGC 2 cut(s) 290, 381
Ple19I CGATCG 1 cut(s) 366
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Psp124BI GAGCTC 1 cut(s) 98
Psp6I CCWGG 3 cut(s) 148, 261, 326
PspGI CCWGG 3 cut(s) 148, 261, 326
PspPI GGNCC 3 cut(s) 155, 172, 185
PsyI GACNNNGTC 1 cut(s) 224
PvuI CGATCG 1 cut(s) 366
SacI GAGCTC 1 cut(s) 98
SatI GCNGC 2 cut(s) 289, 380
Sau3AI GATC 2 cut(s) 267, 363
Sau96I GGNCC 3 cut(s) 155, 172, 185
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 3 cut(s) 150, 263, 328
SduI GDGCHC 2 cut(s) 24, 98
SetI ASST 6 cut(s) 98, 154, 160, 219, 225, 261
SinI GGWCC 2 cut(s) 155, 172
Sse9I AATT 1 cut(s) 36
SseBI AGGCCT 2 cut(s) 278, 306
SsiI CCGC 2 cut(s) 291, 379
SspMI CTAG 1 cut(s) 308
SstI GAGCTC 1 cut(s) 98
StuI AGGCCT 2 cut(s) 278, 306
StyD4I CCNGG 3 cut(s) 148, 261, 326
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 2 cut(s) 74, 251
TaiI ACGT 1 cut(s) 225
TaqI TCGA 2 cut(s) 255, 341
TasI AATT 1 cut(s) 36
TauI GCSGC 1 cut(s) 382
TscAI CASTG 3 cut(s) 79, 201, 357
TseI GCWGC 1 cut(s) 288
TspDTI ATGAA 1 cut(s) 192
TspRI CASTG 3 cut(s) 79, 201, 357
Tth111I GACNNNGTC 1 cut(s) 224
VpaK11BI GGWCC 2 cut(s) 155, 172
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 1 cut(s) 308
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.