RchiOBHm_Chr7g0201781

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000490
Physical Location & Seq
Reverse (-)
19407156 .. 19408165
1010 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18061

Sequence Viewer

Length: 885 bp
ATGGAGCTACTTAGGAAACCAAATATTTCAGACTTTTTCCTTGCACTTTCCATCTTTGATGAACAAGGAATCGAGAGGGAAGCAAAAAAGCTCATTTCGGTGACCTACAAGATTCTTGATACTGCCATACAACAACGGATGCATTATACCTTGGCCAAAGGTGAAAGGAAAGACTTTCTGCAATTCGCCTTGGAATATCATAATCATGAAGATAGTGCAATATTGATTACAATGCAACAACTGAAGGCAGTACTCATGGACATTGTGGTAGGCGAAACCGAGACCGTGACGGCTATAGTGGAATGGGTAATGGCTGAGATGATGCAGCATCCAGAAGAAATGAAAAAAGTTCAAGAAGAACTTACAGAAGTTGTGGGGCTGAACAATTTGGTTGAAGAGTTTCATTTGCCGAAATTACATCACTTGGATGCTGTGGTCAAGGAGACATTTCGATTGCACCCCGCACTGCCCCTTCTAGTGCCCCGCTGTCCAAGTGAATCTGCCACCATTGGTGGCTATACCATACTGAGAGGTACCACTGTCTTCATGAATGCTTGGGCCATACATAGGGACCCGAGTCTTTGGGACAACCCCTTGGAGTTTAGACCCCAGAGTTTCCTGGATCCTAGCAACAAGTTCGATTACATGGGCAATAAGTTTCAGTATGTTCCATTTGGCTCTGGGAGAAGAATATGTGCTGGACTTCCCTTGGCTGAGAGGATGTTAACCTTTGAATTGGCTTCATTCTTGCATTCGTTTGAGTGGCGATTGCCCAATGACACGAAGCTTAACCTTTCAGAAAATTTTGGGCTTGTGGTGAAGAAGATGGCTCCATTGTTTGCTATTGCAACACCCAGGTTATCGAGATTCGAGCTCTATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

294

Amino Acids

33.9

Weight (kDa)

5.83

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 8 - 274 2.6e-63 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 533
AccB1I GGYRCC 1 cut(s) 533
AciI CCGC 2 cut(s) 462, 484
AclWI GGATC 2 cut(s) 617, 630
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 1 cut(s) 802
AcuI CTGAAG 1 cut(s) 263
AfaI GTAC 2 cut(s) 252, 535
AfiI CCNNNNNNNGG 1 cut(s) 567
AgsI TTSAA 3 cut(s) 353, 395, 734
AjnI CCWGG 2 cut(s) 618, 854
AluBI AGCT 4 cut(s) 7, 91, 787, 874
AluI AGCT 4 cut(s) 7, 91, 787, 874
Alw21I GWGCWC 1 cut(s) 876
Alw26I GTCTC 2 cut(s) 275, 437
AlwI GGATC 2 cut(s) 617, 630
Ama87I CYCGRG 1 cut(s) 574
AoxI GGCC 2 cut(s) 153, 558
ApeKI GCWGC 1 cut(s) 325
ApoI RAATTY 1 cut(s) 802
Asp700I GAANNNNTTC 1 cut(s) 399
Asp718I GGTACC 1 cut(s) 533
AspS9I GGNCC 2 cut(s) 558, 571
AsuHPI GGTGA 3 cut(s) 112, 173, 829
AvaI CYCGRG 1 cut(s) 574
AvaII GGWCC 1 cut(s) 571
BaeGI GKGCMC 1 cut(s) 483
BaeI ACNNNNGTAYC 2 cut(s) 525, 558
BalI TGGCCA 1 cut(s) 155
BamHI GGATCC 1 cut(s) 622
BanI GGYRCC 1 cut(s) 533
BanII GRGCYC 1 cut(s) 876
BbsI GAAGAC 1 cut(s) 535
Bbv12I GWGCWC 1 cut(s) 876
BbvI GCAGC 1 cut(s) 337
BccI CCATC 2 cut(s) 59, 820
BceAI ACGGC 1 cut(s) 306
BcgI CGANNNNNNTGC 2 cut(s) 619, 653
BciT130I CCWGG 2 cut(s) 620, 856
BcoDI GTCTC 2 cut(s) 275, 437
BfaI CTAG 2 cut(s) 476, 627
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 1 cut(s) 326
BlsI GCNGC 1 cut(s) 327
BmcAI AGTACT 1 cut(s) 252
Bme1390I CCNGG 2 cut(s) 620, 856
Bme18I GGWCC 1 cut(s) 571
BmeT110I CYCGRG 1 cut(s) 574
BmgT120I GGNCC 2 cut(s) 558, 571
BmiI GGNNCC 5 cut(s) 535, 572, 573, 624, 831
BmrFI CCNGG 2 cut(s) 620, 856
BmsI GCATC 4 cut(s) 129, 312, 337, 418
BoxI GACNNNNGTC 1 cut(s) 576
BpiI GAAGAC 1 cut(s) 535
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 5 cut(s) 150, 189, 594, 708, 854
Bsc4I CCNNNNNNNGG 1 cut(s) 567
BseBI CCWGG 2 cut(s) 620, 856
BseDI CCNNGG 5 cut(s) 150, 189, 594, 708, 854
BseGI GGATG 4 cut(s) 144, 328, 433, 726
BseLI CCNNNNNNNGG 1 cut(s) 567
BseMII CTCAG 3 cut(s) 306, 518, 705
BseSI GKGCMC 1 cut(s) 483
BseXI GCAGC 1 cut(s) 337
BshFI GGCC 2 cut(s) 155, 560
BshNI GGYRCC 1 cut(s) 533
BsiHKAI GWGCWC 1 cut(s) 876
BsiHKCI CYCGRG 1 cut(s) 574
BslFI GGGAC 2 cut(s) 584, 599
BslI CCNNNNNNNGG 1 cut(s) 567
BsmAI GTCTC 2 cut(s) 275, 437
BsmFI GGGAC 2 cut(s) 584, 599
BsmI GAATGC 2 cut(s) 556, 751
BsnI GGCC 2 cut(s) 155, 560
Bso31I GGTCTC 1 cut(s) 275
BsoBI CYCGRG 1 cut(s) 574
Bsp1286I GDGCHC 2 cut(s) 483, 876
Bsp143I GATC 1 cut(s) 622
BspACI CCGC 2 cut(s) 462, 484
BspANI GGCC 2 cut(s) 155, 560
BspCNI CTCAG 3 cut(s) 307, 519, 706
BspHI TCATGA 2 cut(s) 205, 546
BspLI GGNNCC 5 cut(s) 535, 572, 573, 624, 831
BspPI GGATC 2 cut(s) 617, 630
BspT107I GGYRCC 1 cut(s) 533
BspTNI GGTCTC 1 cut(s) 275
BssECI CCNNGG 5 cut(s) 150, 189, 594, 708, 854
BssMI GATC 1 cut(s) 622
BssT1I CCWWGG 4 cut(s) 150, 189, 594, 708
Bst2UI CCWGG 2 cut(s) 620, 856
Bst4CI ACNGT 2 cut(s) 286, 541
Bst6I CTCTTC 1 cut(s) 390
BstDEI CTNAG 4 cut(s) 11, 315, 527, 714
BstEII GGTNACC 1 cut(s) 100
BstF5I GGATG 4 cut(s) 144, 328, 433, 726
BstKTI GATC 1 cut(s) 625
BstMAI GTCTC 2 cut(s) 275, 437
BstMBI GATC 1 cut(s) 622
BstNI CCWGG 2 cut(s) 620, 856
BstPAI GACNNNNGTC 1 cut(s) 576
BstPI GGTNACC 1 cut(s) 100
BstSCI CCNGG 2 cut(s) 618, 854
BstSFI CTRYAG 1 cut(s) 294
BstSLI GKGCMC 1 cut(s) 483
BstV1I GCAGC 1 cut(s) 337
BstV2I GAAGAC 1 cut(s) 535
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
BsuRI GGCC 2 cut(s) 155, 560
BtsCI GGATG 4 cut(s) 144, 328, 433, 726
BtsI GCAGTG 1 cut(s) 464
BtsIMutI CAGTG 2 cut(s) 464, 537
CciI TCATGA 2 cut(s) 205, 546
Cfr13I GGNCC 2 cut(s) 558, 571
Csp6I GTAC 2 cut(s) 251, 534
CviAII CATG 4 cut(s) 206, 256, 547, 646
CviQI GTAC 2 cut(s) 251, 534
DdeI CTNAG 4 cut(s) 11, 315, 527, 714
DpnI GATC 1 cut(s) 624
DpnII GATC 1 cut(s) 622
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Ecl136II GAGCTC 1 cut(s) 874
Eco130I CCWWGG 4 cut(s) 150, 189, 594, 708
Eco24I GRGCYC 1 cut(s) 876
Eco31I GGTCTC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 571
Eco53kI GAGCTC 1 cut(s) 874
Eco57I CTGAAG 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 574
Eco91I GGTNACC 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 874
EcoO109I RGGNCCY 1 cut(s) 571
EcoO65I GGTNACC 1 cut(s) 100
EcoRII CCWGG 2 cut(s) 618, 854
EcoT14I CCWWGG 4 cut(s) 150, 189, 594, 708
EcoT22I ATGCAT 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 876
ErhI CCWWGG 4 cut(s) 150, 189, 594, 708
FaeI CATG 4 cut(s) 209, 259, 550, 649
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FaqI GGGAC 2 cut(s) 584, 599
FatI CATG 4 cut(s) 205, 255, 546, 645
FauI CCCGC 2 cut(s) 469, 491
Fnu4HI GCNGC 1 cut(s) 326
FokI GGATG 4 cut(s) 151, 315, 440, 733
FriOI GRGCYC 1 cut(s) 876
Fsp4HI GCNGC 1 cut(s) 326
FspBI CTAG 2 cut(s) 476, 627
GluI GCNGC 1 cut(s) 326
HaeIII GGCC 2 cut(s) 155, 560
Hin1II CATG 4 cut(s) 209, 259, 550, 649
HincII GTYRAC 1 cut(s) 726
HindII GTYRAC 1 cut(s) 726
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 5 cut(s) 69, 112, 497, 577, 867
HpaI GTTAAC 1 cut(s) 726
HphI GGTGA 3 cut(s) 112, 173, 829
Hpy166II GTNNAC 1 cut(s) 726
Hpy188I TCNGA 2 cut(s) 31, 799
Hpy188III TCNNGA 7 cut(s) 73, 116, 206, 332, 353, 547, 864
Hpy8I GTNNAC 1 cut(s) 726
HpyAV CCTTC 2 cut(s) 238, 482
HpyCH4III ACNGT 2 cut(s) 286, 541
HpyCH4V TGCA 9 cut(s) 44, 142, 181, 218, 235, 325, 457, 751, 848
HpyF3I CTNAG 4 cut(s) 11, 315, 527, 714
Hsp92II CATG 4 cut(s) 209, 259, 550, 649
KflI GGGWCCC 1 cut(s) 571
KpnI GGTACC 1 cut(s) 537
KspAI GTTAAC 1 cut(s) 726
Kzo9I GATC 1 cut(s) 622
LmnI GCTCC 2 cut(s) 4, 835
LpnPI CCDG 8 cut(s) 345, 605, 623, 632, 666, 684, 841, 868
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 4 cut(s) 129, 312, 337, 418
MaeI CTAG 2 cut(s) 476, 627
MaeIII GTNAC 2 cut(s) 100, 286
MalI GATC 1 cut(s) 624
MboI GATC 1 cut(s) 622
MboII GAAGA 8 cut(s) 221, 347, 368, 407, 535, 699, 832, 835
MflI RGATCY 1 cut(s) 622
MhlI GDGCHC 2 cut(s) 483, 876
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 5 cut(s) 182, 385, 413, 734, 802
MluNI TGGCCA 1 cut(s) 155
MlyI GAGTC 1 cut(s) 586
MnlI CCTC 3 cut(s) 69, 524, 711
Mox20I TGGCCA 1 cut(s) 155
Mph1103I ATGCAT 1 cut(s) 144
MroXI GAANNNNTTC 1 cut(s) 399
MscI TGGCCA 1 cut(s) 155
MseI TTAA 3 cut(s) 725, 789, 883
MslI CAYNNNNRTG 3 cut(s) 98, 204, 426
Msp20I TGGCCA 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 486
MspR9I CCNGG 2 cut(s) 620, 856
Mva1269I GAATGC 2 cut(s) 556, 751
MvaI CCWGG 2 cut(s) 620, 856
NdeII GATC 1 cut(s) 622
NlaIII CATG 4 cut(s) 209, 259, 550, 649
NlaIV GGNNCC 5 cut(s) 535, 572, 573, 624, 831
NmuCI GTSAC 2 cut(s) 100, 286
NsiI ATGCAT 1 cut(s) 144
PagI TCATGA 2 cut(s) 205, 546
PctI GAATGC 2 cut(s) 556, 751
PdmI GAANNNNTTC 1 cut(s) 399
PfeI GAWTC 4 cut(s) 69, 112, 497, 867
PfoI TCCNGGA 1 cut(s) 618
PkrI GCNGC 1 cut(s) 327
PleI GAGTC 1 cut(s) 585
PpsI GAGTC 1 cut(s) 585
PpuMI RGGWCCY 1 cut(s) 571
PshAI GACNNNNGTC 1 cut(s) 576
Psp124BI GAGCTC 1 cut(s) 876
Psp5II RGGWCCY 1 cut(s) 571
Psp6I CCWGG 2 cut(s) 618, 854
PspEI GGTNACC 1 cut(s) 100
PspGI CCWGG 2 cut(s) 618, 854
PspN4I GGNNCC 5 cut(s) 535, 572, 573, 624, 831
PspPI GGNCC 2 cut(s) 558, 571
PspPPI RGGWCCY 1 cut(s) 571
PsuI RGATCY 1 cut(s) 622
RsaI GTAC 2 cut(s) 252, 535
RsaNI GTAC 2 cut(s) 251, 534
RseI CAYNNNNRTG 3 cut(s) 98, 204, 426
SacI GAGCTC 1 cut(s) 876
SaqAI TTAA 3 cut(s) 725, 789, 883
SatI GCNGC 1 cut(s) 326
Sau3AI GATC 1 cut(s) 622
Sau96I GGNCC 2 cut(s) 558, 571
ScaI AGTACT 1 cut(s) 252
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 2 cut(s) 620, 856
SduI GDGCHC 2 cut(s) 483, 876
SfaNI GCATC 4 cut(s) 129, 312, 337, 418
SfcI CTRYAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 571
SmiMI CAYNNNNRTG 3 cut(s) 98, 204, 426
Sse9I AATT 5 cut(s) 182, 385, 413, 734, 802
SsiI CCGC 2 cut(s) 462, 484
SspI AATATT 2 cut(s) 25, 222
SspMI CTAG 2 cut(s) 476, 627
SstI GAGCTC 1 cut(s) 876
StyD4I CCNGG 2 cut(s) 618, 854
StyI CCWWGG 4 cut(s) 150, 189, 594, 708
TaaI ACNGT 2 cut(s) 286, 541
TaqI TCGA 5 cut(s) 72, 451, 639, 863, 870
TasI AATT 5 cut(s) 182, 385, 413, 734, 802
TatI WGTACW 1 cut(s) 250
TfiI GAWTC 4 cut(s) 69, 112, 497, 867
Tru1I TTAA 3 cut(s) 725, 789, 883
Tru9I TTAA 3 cut(s) 725, 789, 883
TscAI CASTG 2 cut(s) 471, 544
TseFI GTSAC 2 cut(s) 100, 286
TseI GCWGC 1 cut(s) 325
Tsp45I GTSAC 2 cut(s) 100, 286
TspDTI ATGAA 7 cut(s) 75, 222, 356, 392, 535, 563, 732
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 2 cut(s) 471, 544
VpaK11BI GGWCC 1 cut(s) 571
XapI RAATTY 1 cut(s) 802
XmnI GAANNNNTTC 1 cut(s) 399
XspI CTAG 2 cut(s) 476, 627
ZrmI AGTACT 1 cut(s) 252
Zsp2I ATGCAT 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.