RLG00000003650

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000490
Physical Location & Seq
Forward (+)
51261019 .. 51261607
589 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003650

Sequence Viewer

Length: 501 bp
ATGGTGGAATGGGTAATGGCTGAGCTGATGCAGCATCCAGAAGAAATGAAAAAAGTTCAAGAAGAACTTACAGAAGTAGTGGGGCTGAACAATTTGTGCCCCGCTGTCCAAGCGAATCTGCCACCATTGGTGGCTATACCATACCGAAAGGTACCAGTCTTCATGAATGCTTGGGCCATCCATAGGGACCCGAGTCTTTGGGACAATCCCTTGGAGTTTAGACCCCAGAGGTTCCTGGATCCTAGCAACAAGTTCGATTACTTGGGCAATAAGTTTCAGTATGTTCCATTTGGCTCTGGGAGAAGAATATGTGCTGGACTTCCCTTGGCCGAGAGGATGTTAACCTTTGAATTGGCTTCATTCTTGCATTCGTTTGAGTGGCGATTGCCCAATGACAGGAAGCTTGACCTTTCGGAAAAATTTGGGCTTGTGGTGAAGAAGATGACTCCATTGTTTGCCATTCCAACACCCAGGTTATCGAGATTCGAGCTCTATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

167

Amino Acids

19.37

Weight (kDa)

7.79

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 53 - 147 8e-27 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 151
AccB1I GGYRCC 1 cut(s) 151
AciI CCGC 1 cut(s) 102
AclWI GGATC 2 cut(s) 233, 246
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 1 cut(s) 419
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 2 cut(s) 183, 396
AgsI TTSAA 2 cut(s) 59, 350
AjnI CCWGG 2 cut(s) 234, 470
AluBI AGCT 3 cut(s) 25, 403, 490
AluI AGCT 3 cut(s) 25, 403, 490
Alw21I GWGCWC 1 cut(s) 492
AlwI GGATC 2 cut(s) 233, 246
Ama87I CYCGRG 1 cut(s) 190
AoxI GGCC 2 cut(s) 174, 327
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 1 cut(s) 419
Asp718I GGTACC 1 cut(s) 151
AspS9I GGNCC 2 cut(s) 174, 187
AsuHPI GGTGA 1 cut(s) 445
AvaI CYCGRG 1 cut(s) 190
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 101
BamHI GGATCC 1 cut(s) 238
BanI GGYRCC 1 cut(s) 151
BanII GRGCYC 1 cut(s) 492
BbsI GAAGAC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 492
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 185
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 2 cut(s) 236, 472
BfaI CTAG 1 cut(s) 243
BisI GCNGC 1 cut(s) 32
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 33
Bme1390I CCNGG 2 cut(s) 236, 472
Bme18I GGWCC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 174, 187
BmiI GGNNCC 5 cut(s) 153, 188, 189, 233, 240
BmrFI CCNGG 2 cut(s) 236, 472
BmsI GCATC 2 cut(s) 18, 43
BoxI GACNNNNGTC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 151
Bpu1102I GCTNAGC 1 cut(s) 21
BsaJI CCNNGG 3 cut(s) 210, 324, 470
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 396
Bse1I ACTGG 1 cut(s) 155
BseBI CCWGG 2 cut(s) 236, 472
BseDI CCNNGG 3 cut(s) 210, 324, 470
BseGI GGATG 3 cut(s) 34, 177, 342
BseLI CCNNNNNNNGG 2 cut(s) 183, 396
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 101
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 2 cut(s) 176, 329
BshNI GGYRCC 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 492
BsiHKCI CYCGRG 1 cut(s) 190
BslFI GGGAC 2 cut(s) 200, 215
BslI CCNNNNNNNGG 2 cut(s) 183, 396
BsmFI GGGAC 2 cut(s) 200, 215
BsmI GAATGC 2 cut(s) 172, 367
BsnI GGCC 2 cut(s) 176, 329
BsoBI CYCGRG 1 cut(s) 190
Bsp1286I GDGCHC 2 cut(s) 101, 492
Bsp143I GATC 1 cut(s) 238
Bsp1720I GCTNAGC 1 cut(s) 21
BspACI CCGC 1 cut(s) 102
BspANI GGCC 2 cut(s) 176, 329
BspCNI CTCAG 1 cut(s) 13
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 5 cut(s) 153, 188, 189, 233, 240
BspPI GGATC 2 cut(s) 233, 246
BspT107I GGYRCC 1 cut(s) 151
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 3 cut(s) 210, 324, 470
BssMI GATC 1 cut(s) 238
BssT1I CCWWGG 2 cut(s) 210, 324
Bst2UI CCWGG 2 cut(s) 236, 472
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 3 cut(s) 34, 177, 342
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 31, 110
BstNI CCWGG 2 cut(s) 236, 472
BstPAI GACNNNNGTC 1 cut(s) 192
BstSCI CCNGG 2 cut(s) 234, 470
BstSLI GKGCMC 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 2 cut(s) 176, 329
BtsCI GGATG 3 cut(s) 34, 177, 342
CciI TCATGA 1 cut(s) 162
Cfr13I GGNCC 2 cut(s) 174, 187
Csp6I GTAC 1 cut(s) 152
CviAII CATG 1 cut(s) 163
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 1 cut(s) 21
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 327
Ecl136II GAGCTC 1 cut(s) 490
Eco130I CCWWGG 2 cut(s) 210, 324
Eco24I GRGCYC 1 cut(s) 492
Eco47I GGWCC 1 cut(s) 187
Eco53kI GAGCTC 1 cut(s) 490
Eco88I CYCGRG 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 490
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 234, 470
EcoT14I CCWWGG 2 cut(s) 210, 324
EcoT38I GRGCYC 1 cut(s) 492
ErhI CCWWGG 2 cut(s) 210, 324
FaeI CATG 1 cut(s) 166
FaiI YATR 7 cut(s) 137, 142, 164, 183, 282, 310, 495
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 2 cut(s) 200, 215
FatI CATG 1 cut(s) 162
FauI CCCGC 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 3 cut(s) 21, 164, 349
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 1 cut(s) 32
FspBI CTAG 1 cut(s) 243
GluI GCNGC 1 cut(s) 32
HaeIII GGCC 2 cut(s) 176, 329
Hin1II CATG 1 cut(s) 166
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 4 cut(s) 115, 193, 445, 483
HpaI GTTAAC 1 cut(s) 342
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 4 cut(s) 38, 59, 163, 480
Hpy8I GTNNAC 1 cut(s) 342
HpyCH4V TGCA 2 cut(s) 31, 367
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 110
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 1 cut(s) 166
KflI GGGWCCC 1 cut(s) 187
KpnI GGTACC 1 cut(s) 155
KspAI GTTAAC 1 cut(s) 342
Kzo9I GATC 1 cut(s) 238
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 2 cut(s) 18, 43
MaeI CTAG 1 cut(s) 243
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 6 cut(s) 53, 74, 151, 315, 448, 451
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 2 cut(s) 101, 492
MluCI AATT 3 cut(s) 91, 350, 419
MlyI GAGTC 2 cut(s) 202, 439
MmeI TCCRAC 1 cut(s) 488
MnlI CCTC 2 cut(s) 222, 327
MseI TTAA 2 cut(s) 341, 499
MspA1I CMGCKG 1 cut(s) 104
MspR9I CCNGG 2 cut(s) 236, 472
Mva1269I GAATGC 2 cut(s) 172, 367
MvaI CCWGG 2 cut(s) 236, 472
MwoI GCNNNNNNNGC 2 cut(s) 31, 110
NdeII GATC 1 cut(s) 238
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 5 cut(s) 153, 188, 189, 233, 240
NmeAIII GCCGAG 1 cut(s) 355
PagI TCATGA 1 cut(s) 162
PctI GAATGC 2 cut(s) 172, 367
PfeI GAWTC 2 cut(s) 115, 483
PfoI TCCNGGA 1 cut(s) 234
PkrI GCNGC 1 cut(s) 33
PleI GAGTC 2 cut(s) 201, 439
PpsI GAGTC 2 cut(s) 201, 439
PpuMI RGGWCCY 1 cut(s) 187
PshAI GACNNNNGTC 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 2 cut(s) 234, 470
PspGI CCWGG 2 cut(s) 234, 470
PspN4I GGNNCC 5 cut(s) 153, 188, 189, 233, 240
PspPI GGNCC 2 cut(s) 174, 187
PspPPI RGGWCCY 1 cut(s) 187
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SacI GAGCTC 1 cut(s) 492
SaqAI TTAA 2 cut(s) 341, 499
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 2 cut(s) 174, 187
SchI GAGTC 2 cut(s) 202, 439
ScrFI CCNGG 2 cut(s) 236, 472
SduI GDGCHC 2 cut(s) 101, 492
SetI ASST 8 cut(s) 27, 153, 233, 347, 405, 411, 476, 492
SfaNI GCATC 2 cut(s) 18, 43
SinI GGWCC 1 cut(s) 187
Sse9I AATT 3 cut(s) 91, 350, 419
SsiI CCGC 1 cut(s) 102
SspMI CTAG 1 cut(s) 243
SstI GAGCTC 1 cut(s) 492
StyD4I CCNGG 2 cut(s) 234, 470
StyI CCWWGG 2 cut(s) 210, 324
TaqI TCGA 3 cut(s) 255, 479, 486
TasI AATT 3 cut(s) 91, 350, 419
TfiI GAWTC 2 cut(s) 115, 483
Tru1I TTAA 2 cut(s) 341, 499
Tru9I TTAA 2 cut(s) 341, 499
TseI GCWGC 1 cut(s) 31
TspDTI ATGAA 4 cut(s) 62, 151, 179, 348
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 419
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.