Rh7AG193100

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000490
Physical Location & Seq
Reverse (-)
17275111 .. 17275449
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG193100.1

Sequence Viewer

Length: 339 bp
ATGAATGCTTGGGCCATACATAGAGACCTGAGTCTTTGGGACAACCCCTTGGAGTTTAGACCCCAGAGGTTCCTGGAACCTAGCAACAAGTTCGATTACATGGGCAATAAGTTTCAGTATGTTCCATTTGGCTCTGGGAGAAGAATATGTGCCGGACTTCCCATGGCCGTGAGGATGTTAACCTTTGAATTGGCTACATTCTTGCATTCGTTTGAGTGGCGATTGCCCAATGACACGAAGCTTGACCTTTCAGAAAAATTTGGGCTTGTGGTGAAGAAGATGGCTCCATTGTTTGCCATTCCAACACCCAGGTTATCGAGATTCAAGCTCTATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

112

Amino Acids

13.19

Weight (kDa)

9.84

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 92 2.8e-24 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 257
AgsI TTSAA 2 cut(s) 188, 325
AjnI CCWGG 2 cut(s) 72, 308
AluBI AGCT 2 cut(s) 241, 328
AluI AGCT 2 cut(s) 241, 328
Alw26I GTCTC 1 cut(s) 18
AoxI GGCC 2 cut(s) 12, 165
ApoI RAATTY 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 283
BccI CCATC 1 cut(s) 274
BceAI ACGGC 1 cut(s) 152
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BciT130I CCWGG 2 cut(s) 74, 310
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 1 cut(s) 81
Bme1390I CCNGG 2 cut(s) 74, 310
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 3 cut(s) 71, 78, 285
BmrFI CCNGG 2 cut(s) 74, 310
BoxI GACNNNNGTC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 18
BsaJI CCNNGG 3 cut(s) 48, 162, 308
BseBI CCWGG 2 cut(s) 74, 310
BseDI CCNNGG 3 cut(s) 48, 162, 308
BseGI GGATG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 20
BshFI GGCC 2 cut(s) 14, 167
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 53
BsmI GAATGC 2 cut(s) 10, 205
BsnI GGCC 2 cut(s) 14, 167
Bso31I GGTCTC 1 cut(s) 18
Bsp19I CCATGG 1 cut(s) 162
BspANI GGCC 2 cut(s) 14, 167
BspCNI CTCAG 1 cut(s) 21
BspLI GGNNCC 3 cut(s) 71, 78, 285
BspTNI GGTCTC 1 cut(s) 18
BssECI CCNNGG 3 cut(s) 48, 162, 308
BssT1I CCWWGG 2 cut(s) 48, 162
Bst2UI CCWGG 2 cut(s) 74, 310
BstDEI CTNAG 1 cut(s) 29
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 18
BstNI CCWGG 2 cut(s) 74, 310
BstPAI GACNNNNGTC 1 cut(s) 30
BstSCI CCNGG 2 cut(s) 72, 308
BsuRI GGCC 2 cut(s) 14, 167
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 12
CviAII CATG 2 cut(s) 100, 163
CviJI RGCY 8 cut(s) 14, 132, 167, 194, 241, 265, 284, 328
CviKI_1 RGCY 8 cut(s) 14, 132, 167, 194, 241, 265, 284, 328
DdeI CTNAG 1 cut(s) 29
EaeI YGGCCR 1 cut(s) 165
Eco130I CCWWGG 2 cut(s) 48, 162
Eco31I GGTCTC 1 cut(s) 18
EcoRII CCWGG 2 cut(s) 72, 308
EcoT14I CCWWGG 2 cut(s) 48, 162
ErhI CCWWGG 2 cut(s) 48, 162
FaeI CATG 2 cut(s) 103, 166
FaiI YATR 7 cut(s) 17, 21, 101, 120, 148, 164, 333
FaqI GGGAC 1 cut(s) 53
FatI CATG 2 cut(s) 99, 162
FokI GGATG 1 cut(s) 187
FspBI CTAG 1 cut(s) 81
HaeIII GGCC 2 cut(s) 14, 167
HapII CCGG 1 cut(s) 153
Hin1II CATG 2 cut(s) 103, 166
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 2 cut(s) 31, 321
HpaI GTTAAC 1 cut(s) 180
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 1 cut(s) 318
Hpy8I GTNNAC 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 205
HpyF3I CTNAG 1 cut(s) 29
Hsp92II CATG 2 cut(s) 103, 166
KspAI GTTAAC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 8 cut(s) 41, 59, 77, 86, 120, 166, 295, 322
MaeI CTAG 1 cut(s) 81
MboII GAAGA 3 cut(s) 153, 286, 289
MluCI AATT 2 cut(s) 188, 257
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 326
MnlI CCTC 2 cut(s) 60, 165
MseI TTAA 2 cut(s) 179, 337
MslI CAYNNNNRTG 1 cut(s) 167
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 2 cut(s) 74, 310
Mva1269I GAATGC 2 cut(s) 10, 205
MvaI CCWGG 2 cut(s) 74, 310
NcoI CCATGG 1 cut(s) 162
NlaIII CATG 2 cut(s) 103, 166
NlaIV GGNNCC 3 cut(s) 71, 78, 285
PctI GAATGC 2 cut(s) 10, 205
PfeI GAWTC 1 cut(s) 321
PfoI TCCNGGA 1 cut(s) 72
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
PshAI GACNNNNGTC 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 72, 308
PspGI CCWGG 2 cut(s) 72, 308
PspN4I GGNNCC 3 cut(s) 71, 78, 285
PspPI GGNCC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 2 cut(s) 179, 337
Sau96I GGNCC 1 cut(s) 12
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 2 cut(s) 74, 310
SetI ASST 8 cut(s) 30, 71, 82, 185, 243, 249, 314, 330
SmiMI CAYNNNNRTG 1 cut(s) 167
Sse9I AATT 2 cut(s) 188, 257
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 72, 308
StyI CCWWGG 2 cut(s) 48, 162
TaqI TCGA 2 cut(s) 93, 317
TasI AATT 2 cut(s) 188, 257
TfiI GAWTC 1 cut(s) 321
Tru1I TTAA 2 cut(s) 179, 337
Tru9I TTAA 2 cut(s) 179, 337
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 257
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.