RchiOBHm_Chr7g0225701

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000490
Physical Location & Seq
Forward (+)
48542944 .. 48544142
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20215

Sequence Viewer

Length: 1140 bp
ATGGCAAGGGTTTATGGTCCAATTTACAAACTCCAACTTGGTACCAAGTTGTGCATTGTGGTGAGCTCACCTGAGCTTGTGAAGCAAGTGGTTCGTGACCATGACACAACATTTTCCAACCGTGACCCTACAATTGCTGGTCTACTGAGCAAGGTGTTTGTGGGTCAGATGCTAAGCAAAATCAACCTTGATGATGGCTATGCTCTGAGAAAAGAGGAGGTGCACAAGTCGATCAGTCATATTTATCATGACAAAATTGGAACCCAAACTGATTTGGGTGAGTTTGCATTTTCCACAGTAATCAACGCAACTTTGCGTATGCTATGGGGTGCAACTCTACAAGGGACTGATTTTGGTGAAGATTATAGGAAATTGGTGGCAGAAATTGTATATCTATTTGCAAAACCAAACATTTCGGACTATTTTCCTGTGCTTGCAAGGTTTGACATACAAGGAATTGAGAGGCAAGCAAAGAAAGTTCAATCCGCGATTGACAAGATTCTAAGTCGTGCCATAGAAGAACGGATGAAGATTCTAAGTCGTGCCATAATAGGGGAATGGGTTCTGACTGAGCTGATGCAGCACCCAGAAGAAATGATAAGAGTTCAAGAAGAACTAACACAAATTGTGGGGTTGAACAACTTGGTTGAAGAGTTTCATTTGCCGAAATTACATCACTTAGATGCTGTGATCAAGGAGACATTTCGCTTGCACCCTCCAGTGCCCCTTCTAGTGCCCCGGCGTTCAAGCCAACCTACCATCATTGGTGGCTATTACATACCAAAAGGTTCCACTATTTTTCTCAATGCTTGGGCCATACAGAGAGTTCCAAGTGTTTGGGACGATCCCTTGGAATTTAGACCCCAGAGGTTCCTAAATCCAAGCAATAGCTTTGATTACCAGGGCAACAAATTTCAGTTTCTTCCATTTGGTTATGGGAGGAGAATATGTGCCGGGATTCCCTTAGCAGAGAGGATGCTGTTCTATGTGTTGGCTTCATTCTTGCATTCGTTTGATTGGAAACTGCCTAATGACAAAAAGCTTGACGTTTCAGACAAATTTGGGATTGTGACAAAGAAAAACACTCCACTTATTGCTGTACCAACACCCAGGTTATCTAATTTGGAGCTCTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

379

Amino Acids

43.31

Weight (kDa)

8.95

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 186 - 362 3.8e-56 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 41
AccI GTMKAC 1 cut(s) 142
AccII CGCG 1 cut(s) 488
AciI CCGC 1 cut(s) 486
AclWI GGATC 1 cut(s) 839
AcsI RAATTY 3 cut(s) 854, 911, 1058
AfaI GTAC 2 cut(s) 43, 1101
AfiI CCNNNNNNNGG 1 cut(s) 552
AgsI TTSAA 5 cut(s) 482, 608, 637, 650, 747
AjnI CCWGG 2 cut(s) 900, 1109
AluBI AGCT 6 cut(s) 66, 76, 574, 891, 1042, 1129
AluI AGCT 6 cut(s) 66, 76, 574, 891, 1042, 1129
Alw21I GWGCWC 3 cut(s) 68, 225, 1131
Alw26I GTCTC 1 cut(s) 692
Alw44I GTGCAC 1 cut(s) 221
AlwI GGATC 1 cut(s) 839
AoxI GGCC 1 cut(s) 813
ApaLI GTGCAC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 580
ApoI RAATTY 3 cut(s) 854, 911, 1058
Asp700I GAANNNNTTC 2 cut(s) 561, 654
Asp718I GGTACC 1 cut(s) 41
AspS9I GGNCC 2 cut(s) 17, 813
AsuC2I CCSGG 2 cut(s) 739, 955
AsuHPI GGTGA 4 cut(s) 60, 73, 290, 368
AvaII GGWCC 1 cut(s) 17
BaeGI GKGCMC 3 cut(s) 225, 726, 738
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 2 cut(s) 68, 1131
Bbv12I GWGCWC 3 cut(s) 68, 225, 1131
BbvI GCAGC 1 cut(s) 592
BccI CCATC 2 cut(s) 188, 767
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 2 cut(s) 902, 1111
BclI TGATCA 1 cut(s) 690
BcnI CCSGG 2 cut(s) 739, 955
BcoDI GTCTC 1 cut(s) 692
BfaI CTAG 1 cut(s) 731
BisI GCNGC 1 cut(s) 581
BlpI GCTNAGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 582
Bme1390I CCNGG 4 cut(s) 739, 902, 955, 1111
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 2 cut(s) 17, 813
BmiI GGNNCC 4 cut(s) 43, 262, 790, 872
BmrFI CCNGG 4 cut(s) 739, 902, 955, 1111
BmsI GCATC 4 cut(s) 159, 567, 673, 966
BpmI CTGGAG 1 cut(s) 702
Bpu10I CCTNAGC 2 cut(s) 72, 964
Bpu1102I GCTNAGC 1 cut(s) 173
BpuMI CCSGG 2 cut(s) 739, 955
BsaJI CCNNGG 4 cut(s) 737, 849, 901, 1109
BsaXI ACNNNNNCTCC 2 cut(s) 934, 964
Bsc4I CCNNNNNNNGG 1 cut(s) 552
Bse1I ACTGG 1 cut(s) 719
BseBI CCWGG 2 cut(s) 902, 1111
BseDI CCNNGG 4 cut(s) 737, 849, 901, 1109
BseGI GGATG 2 cut(s) 531, 981
BseLI CCNNNNNNNGG 1 cut(s) 552
BseMII CTCAG 4 cut(s) 63, 137, 197, 561
BseNI ACTGG 1 cut(s) 719
BseRI GAGGAG 2 cut(s) 230, 955
BseSI GKGCMC 3 cut(s) 225, 726, 738
BseXI GCAGC 1 cut(s) 592
Bsh1236I CGCG 1 cut(s) 488
BshFI GGCC 1 cut(s) 815
BshNI GGYRCC 1 cut(s) 41
BsiHKAI GWGCWC 3 cut(s) 68, 225, 1131
BsiSI CCGG 2 cut(s) 739, 954
BslFI GGGAC 2 cut(s) 358, 854
BslI CCNNNNNNNGG 1 cut(s) 552
BsmAI GTCTC 1 cut(s) 692
BsmFI GGGAC 2 cut(s) 358, 854
BsmI GAATGC 1 cut(s) 1006
BsnI GGCC 1 cut(s) 815
Bsp1286I GDGCHC 5 cut(s) 68, 225, 726, 738, 1131
Bsp143I GATC 3 cut(s) 231, 690, 844
Bsp1720I GCTNAGC 1 cut(s) 173
BspACI CCGC 1 cut(s) 486
BspANI GGCC 1 cut(s) 815
BspCNI CTCAG 4 cut(s) 64, 138, 198, 562
BspFNI CGCG 1 cut(s) 488
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 4 cut(s) 43, 262, 790, 872
BspPI GGATC 1 cut(s) 839
BspT107I GGYRCC 1 cut(s) 41
BsrI ACTGG 1 cut(s) 719
BssECI CCNNGG 4 cut(s) 737, 849, 901, 1109
BssMI GATC 3 cut(s) 231, 690, 844
BssT1I CCWWGG 1 cut(s) 849
Bst2UI CCWGG 2 cut(s) 902, 1111
Bst4CI ACNGT 2 cut(s) 122, 298
Bst6I CTCTTC 1 cut(s) 645
BstC8I GCNNGC 3 cut(s) 435, 468, 710
BstDEI CTNAG 9 cut(s) 72, 146, 173, 206, 503, 536, 570, 679, 964
BstF5I GGATG 2 cut(s) 531, 981
BstFNI CGCG 1 cut(s) 488
BstKTI GATC 3 cut(s) 234, 693, 847
BstMAI GTCTC 1 cut(s) 692
BstMBI GATC 3 cut(s) 231, 690, 844
BstMWI GCNNNNNNNGC 2 cut(s) 82, 580
BstNI CCWGG 2 cut(s) 902, 1111
BstSCI CCNGG 4 cut(s) 737, 900, 953, 1109
BstSLI GKGCMC 3 cut(s) 225, 726, 738
BstUI CGCG 1 cut(s) 488
BstV1I GCAGC 1 cut(s) 592
BstXI CCANNNNNNTGG 1 cut(s) 837
BsuRI GGCC 1 cut(s) 815
BtsCI GGATG 2 cut(s) 531, 981
BtsIMutI CAGTG 1 cut(s) 726
Cac8I GCNNGC 3 cut(s) 435, 468, 710
CciI TCATGA 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 17, 813
Csp6I GTAC 2 cut(s) 42, 1100
CviAII CATG 2 cut(s) 101, 248
CviQI GTAC 2 cut(s) 42, 1100
DdeI CTNAG 9 cut(s) 72, 146, 173, 206, 503, 536, 570, 679, 964
DpnI GATC 3 cut(s) 233, 692, 846
DpnII GATC 3 cut(s) 231, 690, 844
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
Ecl136II GAGCTC 2 cut(s) 66, 1129
Eco130I CCWWGG 1 cut(s) 849
Eco24I GRGCYC 2 cut(s) 68, 1131
Eco47I GGWCC 1 cut(s) 17
Eco53kI GAGCTC 2 cut(s) 66, 1129
EcoICRI GAGCTC 2 cut(s) 66, 1129
EcoRII CCWGG 2 cut(s) 900, 1109
EcoT14I CCWWGG 1 cut(s) 849
EcoT38I GRGCYC 2 cut(s) 68, 1131
ErhI CCWWGG 1 cut(s) 849
FaeI CATG 2 cut(s) 104, 251
FaqI GGGAC 2 cut(s) 358, 854
FatI CATG 2 cut(s) 100, 247
FbaI TGATCA 1 cut(s) 690
FblI GTMKAC 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 581
FokI GGATG 2 cut(s) 538, 988
FriOI GRGCYC 2 cut(s) 68, 1131
Fsp4HI GCNGC 1 cut(s) 581
FspBI CTAG 1 cut(s) 731
GluI GCNGC 1 cut(s) 581
GsuI CTGGAG 1 cut(s) 702
HaeIII GGCC 1 cut(s) 815
HapII CCGG 2 cut(s) 739, 954
Hin1II CATG 2 cut(s) 104, 251
HindIII AAGCTT 1 cut(s) 1040
HinfI GANTC 3 cut(s) 499, 532, 958
HpaII CCGG 2 cut(s) 739, 954
HphI GGTGA 4 cut(s) 60, 73, 290, 368
Hpy166II GTNNAC 2 cut(s) 143, 223
Hpy188I TCNGA 5 cut(s) 168, 207, 418, 567, 1054
Hpy188III TCNNGA 3 cut(s) 95, 248, 608
Hpy8I GTNNAC 2 cut(s) 143, 223
HpyAV CCTTC 1 cut(s) 737
HpyCH4III ACNGT 2 cut(s) 122, 298
HpyCH4IV ACGT 1 cut(s) 1047
HpyCH4V TGCA 9 cut(s) 54, 223, 287, 332, 401, 437, 580, 712, 1006
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 580
HpyF3I CTNAG 9 cut(s) 72, 146, 173, 206, 503, 536, 570, 679, 964
HpySE526I ACGT 1 cut(s) 1047
Hsp92II CATG 2 cut(s) 104, 251
KpnI GGTACC 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 690
Kzo9I GATC 3 cut(s) 231, 690, 844
LmnI GCTCC 1 cut(s) 1126
Lsp1109I GCAGC 1 cut(s) 592
LweI GCATC 4 cut(s) 159, 567, 673, 966
MaeI CTAG 1 cut(s) 731
MaeII ACGT 1 cut(s) 1047
MaeIII GTNAC 3 cut(s) 95, 122, 1069
MalI GATC 3 cut(s) 233, 692, 846
MboI GATC 3 cut(s) 231, 690, 844
MboII GAAGA 7 cut(s) 371, 530, 541, 602, 623, 662, 914
MfeI CAATTG 1 cut(s) 132
MhlI GDGCHC 5 cut(s) 68, 225, 726, 738, 1131
MmeI TCCRAC 2 cut(s) 58, 141
MnlI CCTC 7 cut(s) 208, 211, 456, 726, 861, 933, 966
MroXI GAANNNNTTC 2 cut(s) 561, 654
MseI TTAA 1 cut(s) 1138
MslI CAYNNNNRTG 2 cut(s) 59, 681
MspI CCGG 2 cut(s) 739, 954
MspR9I CCNGG 4 cut(s) 739, 902, 955, 1111
MunI CAATTG 1 cut(s) 132
Mva1269I GAATGC 1 cut(s) 1006
MvaI CCWGG 2 cut(s) 902, 1111
MvnI CGCG 1 cut(s) 488
MwoI GCNNNNNNNGC 2 cut(s) 82, 580
NciI CCSGG 2 cut(s) 739, 955
NdeII GATC 3 cut(s) 231, 690, 844
NlaIII CATG 2 cut(s) 104, 251
NlaIV GGNNCC 4 cut(s) 43, 262, 790, 872
NmuCI GTSAC 3 cut(s) 95, 122, 1069
PagI TCATGA 1 cut(s) 247
PctI GAATGC 1 cut(s) 1006
PdmI GAANNNNTTC 2 cut(s) 561, 654
PfeI GAWTC 3 cut(s) 499, 532, 958
PkrI GCNGC 1 cut(s) 582
Psp124BI GAGCTC 2 cut(s) 68, 1131
Psp6I CCWGG 2 cut(s) 900, 1109
PspGI CCWGG 2 cut(s) 900, 1109
PspN4I GGNNCC 4 cut(s) 43, 262, 790, 872
PspPI GGNCC 2 cut(s) 17, 813
RsaI GTAC 2 cut(s) 43, 1101
RsaNI GTAC 2 cut(s) 42, 1100
RseI CAYNNNNRTG 2 cut(s) 59, 681
SacI GAGCTC 2 cut(s) 68, 1131
SaqAI TTAA 1 cut(s) 1138
SatI GCNGC 1 cut(s) 581
Sau3AI GATC 3 cut(s) 231, 690, 844
Sau96I GGNCC 2 cut(s) 17, 813
ScrFI CCNGG 4 cut(s) 739, 902, 955, 1111
SduI GDGCHC 5 cut(s) 68, 225, 726, 738, 1131
SfaNI GCATC 4 cut(s) 159, 567, 673, 966
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 2 cut(s) 59, 681
SsiI CCGC 1 cut(s) 486
SspMI CTAG 1 cut(s) 731
SstI GAGCTC 2 cut(s) 68, 1131
StyD4I CCNGG 4 cut(s) 737, 900, 953, 1109
StyI CCWWGG 1 cut(s) 849
TaaI ACNGT 2 cut(s) 122, 298
TaiI ACGT 1 cut(s) 1050
TaqI TCGA 1 cut(s) 230
TfiI GAWTC 3 cut(s) 499, 532, 958
Tru1I TTAA 1 cut(s) 1138
Tru9I TTAA 1 cut(s) 1138
TscAI CASTG 1 cut(s) 726
TseFI GTSAC 3 cut(s) 95, 122, 1069
TseI GCWGC 1 cut(s) 580
Tsp45I GTSAC 3 cut(s) 95, 122, 1069
TspDTI ATGAA 3 cut(s) 542, 647, 987
TspGWI ACGGA 1 cut(s) 538
TspRI CASTG 1 cut(s) 726
VneI GTGCAC 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 3 cut(s) 854, 911, 1058
XmiI GTMKAC 1 cut(s) 142
XmnI GAANNNNTTC 2 cut(s) 561, 654
XspI CTAG 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.