RLG00000003652

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
51278990 .. 51280688
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003652

Sequence Viewer

Length: 1395 bp
ATGGGGTCATCACTGTGGGTTACTAGCAATCATGACAATTGGGAAAACCTTCCAGCAATTTCCACACTCTTGTTCATGGTGTTTACTCTGCTCTGGTTCTTATGGATTTGGAAGAAACCGAATAGAAACCCTACACCTTCATTGCCACTAGGCCCTCGTGGTCTGCCGCTACTCAGATATCTTCCATTTCTTGGTACAAACCCCCACCTAGAATTCACAGTCAGGGCAAGGGTTTATGGCCCAATTTACAAACTCCAACTTGGTACCAAGTTGTGCATTGTGGTGAGCTCACTTGAGCTTGTGAAACAAGTGGTTCGTGACCATGACACAACATTTTCCAACCGTGACCTTACAATTGCTGCTCTAGTCGGGTCATATGGAGCATCCGACATTGCATTTGGATCGTATGGTTTAGATTGGAGGAAGCTGCGCAAGGTGTTTGTGAGTAAGATGCTAAGCAAAATCAATCTTGATGATGGCTATGCTCCGAGAAAAGAGGAGGTGCACAAGTCGATCAATCATATTTATCATGACAAAATTGGAACCCAAACTGATTTGGGCGAGTTTGCATTTTCCACAGTAATCAACGCAACTTTGCGTATGCTATGGGGTGCAACTCTACAAGGGACTGATTTTAGTGAAGACTACAGGAAATTGGTGGCAGAAATTGTAGATCTATTTGCGAAACCAAACATTTCGGACTATTTTCTTGTGCTTGCAAGGTTTGACATACAAGGAATTGAGAGACAAGCAAAGAAAGTTCAATCCGCGATAGACAAGATTCTAAGTTGTGCCATAGAAGAACAGATGAAGATGCTGGCCTCAGCCAAAAATGGGGGAGTACAACAAAAACATGAAAGGAAGGACTTTCTGGAATTCCTCTTGGAGAACAATAATAATCATGAAGATGGTTCAACATCCTTTACAGATATCGTGGTGGGTGGAACTGACACTACTGCAATAACAGTGGAATGGGTTCTGACTGAGCTGATGCAGCACCCAGAAGAAATGATAAGAGTTCAAGAAGAACTAACACAAATTGTTGGGTTGAATAACTTGGTTGAAGAGTGTCATTTGCCGAAATTACTTCACTTAGATGCTGTGATCAAGAAGAGTGACACTGCCCCTTCTAGTGCCCCGGCGTTCAAGCCAACCTACCACCATTGGTGGCTATTACATACCAAAAGTTATGGGAGGAGAGTATGTGTCGAGATTACCTTAGCAGAAAGGATGCTGATCTATGCGTTGGCTTCATTCTTGCATTCGTTCGAGTGGAAATTGCCTAATGACGAGAAGCTTGACCTTTCAGACAAATTTGGGATTGTGACAAAGAAAAACACTCCACTTATTGTTGTACCAACACCCAGGTTATCCAATTTGGAGCACTATGCTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

465

Amino Acids

52.81

Weight (kDa)

6.77

Isoelectric Point (pI)

30.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 49 - 370 6.7e-43 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 431
Acc65I GGTACC 1 cut(s) 263
AccB1I GGYRCC 1 cut(s) 263
AccB7I CCANNNNNTGG 1 cut(s) 191
AccII CGCG 1 cut(s) 770
AciI CCGC 2 cut(s) 167, 768
AclWI GGATC 1 cut(s) 409
AcsI RAATTY 3 cut(s) 212, 875, 1313
AfaI GTAC 4 cut(s) 196, 265, 843, 1356
AfiI CCNNNNNNNGG 2 cut(s) 191, 834
AgsI TTSAA 6 cut(s) 764, 915, 1022, 1051, 1064, 1147
AjnI CCWGG 1 cut(s) 1364
AluBI AGCT 5 cut(s) 288, 298, 427, 988, 1297
AluI AGCT 5 cut(s) 288, 298, 427, 988, 1297
Alw21I GWGCWC 3 cut(s) 290, 507, 1386
Alw26I GTCTC 1 cut(s) 739
Alw44I GTGCAC 1 cut(s) 503
AlwI GGATC 1 cut(s) 409
AoxI GGCC 3 cut(s) 151, 238, 819
ApaLI GTGCAC 1 cut(s) 503
ApeKI GCWGC 3 cut(s) 359, 427, 994
ApoI RAATTY 3 cut(s) 212, 875, 1313
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
Asp700I GAANNNNTTC 2 cut(s) 48, 975
Asp718I GGTACC 1 cut(s) 263
AspLEI GCGC 1 cut(s) 432
AspS9I GGNCC 2 cut(s) 152, 239
AsuC2I CCSGG 1 cut(s) 1139
AsuHPI GGTGA 1 cut(s) 295
BaeGI GKGCMC 2 cut(s) 507, 1138
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 290
BauI CACGAG 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 648
Bbv12I GWGCWC 3 cut(s) 290, 507, 1386
BbvCI CCTCAGC 1 cut(s) 823
BbvI GCAGC 3 cut(s) 346, 414, 1006
BccI CCATC 2 cut(s) 470, 902
BcgI CGANNNNNNTGC 2 cut(s) 384, 418
BciT130I CCWGG 1 cut(s) 1366
BclI TGATCA 1 cut(s) 1104
BcnI CCSGG 1 cut(s) 1139
BcoDI GTCTC 1 cut(s) 739
BfaI CTAG 5 cut(s) 24, 149, 209, 365, 1131
BfmI CTRYAG 1 cut(s) 646
BglII AGATCT 1 cut(s) 673
BisI GCNGC 4 cut(s) 167, 360, 428, 995
BlpI GCTNAGC 1 cut(s) 455
BlsI GCNGC 4 cut(s) 168, 361, 429, 996
Bme1390I CCNGG 2 cut(s) 1139, 1366
BmgT120I GGNCC 2 cut(s) 152, 239
BmiI GGNNCC 2 cut(s) 265, 544
BmrFI CCNGG 2 cut(s) 1139, 1366
BmsI GCATC 6 cut(s) 392, 441, 804, 981, 1087, 1221
BpiI GAAGAC 1 cut(s) 648
Bpu10I CCTNAGC 2 cut(s) 823, 1219
Bpu1102I GCTNAGC 1 cut(s) 455
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 1139
BsaBI GATNNNNATC 1 cut(s) 1235
BsaJI CCNNGG 2 cut(s) 1137, 1364
BsaXI ACNNNNNCTCC 2 cut(s) 1189, 1219
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 834
Bse3DI GCAATG 2 cut(s) 140, 390
Bse8I GATNNNNATC 1 cut(s) 1235
BseBI CCWGG 1 cut(s) 1366
BseDI CCNNGG 2 cut(s) 1137, 1364
BseGI GGATG 3 cut(s) 383, 917, 1236
BseJI GATNNNNATC 1 cut(s) 1235
BseLI CCNNNNNNNGG 2 cut(s) 191, 834
BseMI GCAATG 2 cut(s) 140, 390
BseMII CTCAG 3 cut(s) 187, 837, 975
BseRI GAGGAG 2 cut(s) 512, 1210
BseSI GKGCMC 2 cut(s) 507, 1138
BseXI GCAGC 3 cut(s) 346, 414, 1006
Bsh1236I CGCG 1 cut(s) 770
BshFI GGCC 3 cut(s) 153, 240, 821
BshNI GGYRCC 1 cut(s) 263
BsiHKAI GWGCWC 3 cut(s) 290, 507, 1386
BsiSI CCGG 1 cut(s) 1139
BslFI GGGAC 1 cut(s) 640
BslI CCNNNNNNNGG 2 cut(s) 191, 834
BsmAI GTCTC 1 cut(s) 739
BsmFI GGGAC 1 cut(s) 640
BsmI GAATGC 1 cut(s) 1261
BsnI GGCC 3 cut(s) 153, 240, 821
Bsp1286I GDGCHC 4 cut(s) 290, 507, 1138, 1386
Bsp143I GATC 5 cut(s) 401, 513, 673, 1104, 1236
Bsp1720I GCTNAGC 1 cut(s) 455
BspACI CCGC 2 cut(s) 167, 768
BspANI GGCC 3 cut(s) 153, 240, 821
BspCNI CTCAG 3 cut(s) 186, 836, 976
BspFNI CGCG 1 cut(s) 770
BspHI TCATGA 3 cut(s) 31, 529, 901
BspLI GGNNCC 2 cut(s) 265, 544
BspPI GGATC 1 cut(s) 409
BspT107I GGYRCC 1 cut(s) 263
BsrDI GCAATG 2 cut(s) 140, 390
BssECI CCNNGG 2 cut(s) 1137, 1364
BssMI GATC 5 cut(s) 401, 513, 673, 1104, 1236
BssSI CACGAG 1 cut(s) 156
Bst2BI CACGAG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 1366
Bst4CI ACNGT 5 cut(s) 15, 220, 344, 580, 967
Bst6I CTCTTC 2 cut(s) 1059, 1106
BstC8I GCNNGC 2 cut(s) 717, 819
BstDEI CTNAG 7 cut(s) 173, 455, 785, 823, 984, 1093, 1219
BstF5I GGATG 3 cut(s) 383, 917, 1236
BstFNI CGCG 1 cut(s) 770
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 5 cut(s) 404, 516, 676, 1107, 1239
BstMAI GTCTC 1 cut(s) 739
BstMBI GATC 5 cut(s) 401, 513, 673, 1104, 1236
BstMWI GCNNNNNNNGC 1 cut(s) 994
BstNI CCWGG 1 cut(s) 1366
BstSCI CCNGG 2 cut(s) 1137, 1364
BstSFI CTRYAG 1 cut(s) 646
BstSLI GKGCMC 2 cut(s) 507, 1138
BstUI CGCG 1 cut(s) 770
BstV1I GCAGC 3 cut(s) 346, 414, 1006
BstV2I GAAGAC 1 cut(s) 648
BstX2I RGATCY 1 cut(s) 673
BstYI RGATCY 1 cut(s) 673
BsuRI GGCC 3 cut(s) 153, 240, 821
BtsCI GGATG 3 cut(s) 383, 917, 1236
BtsI GCAGTG 1 cut(s) 1119
BtsIMutI CAGTG 3 cut(s) 11, 972, 1119
Cac8I GCNNGC 2 cut(s) 717, 819
CciI TCATGA 3 cut(s) 31, 529, 901
CfoI GCGC 1 cut(s) 432
Cfr13I GGNCC 2 cut(s) 152, 239
Csp6I GTAC 4 cut(s) 195, 264, 842, 1355
CspCI CAANNNNNGTGG 2 cut(s) 948, 983
CviAII CATG 6 cut(s) 32, 76, 323, 530, 854, 902
CviQI GTAC 4 cut(s) 195, 264, 842, 1355
DdeI CTNAG 7 cut(s) 173, 455, 785, 823, 984, 1093, 1219
DpnI GATC 5 cut(s) 403, 515, 675, 1106, 1238
DpnII GATC 5 cut(s) 401, 513, 673, 1104, 1236
Eam1104I CTCTTC 2 cut(s) 1059, 1106
EarI CTCTTC 2 cut(s) 1059, 1106
Ecl136II GAGCTC 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 290
Eco32I GATATC 2 cut(s) 179, 931
Eco53kI GAGCTC 1 cut(s) 288
EcoICRI GAGCTC 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 152
EcoRI GAATTC 2 cut(s) 212, 875
EcoRII CCWGG 1 cut(s) 1364
EcoRV GATATC 2 cut(s) 179, 931
EcoT38I GRGCYC 1 cut(s) 290
FaeI CATG 6 cut(s) 35, 79, 326, 533, 857, 905
FaqI GGGAC 1 cut(s) 640
FatI CATG 6 cut(s) 31, 75, 322, 529, 853, 901
FauNDI CATATG 1 cut(s) 376
FbaI TGATCA 1 cut(s) 1104
Fnu4HI GCNGC 4 cut(s) 167, 360, 428, 995
FokI GGATG 3 cut(s) 370, 904, 1243
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 4 cut(s) 167, 360, 428, 995
FspBI CTAG 5 cut(s) 24, 149, 209, 365, 1131
FspI TGCGCA 1 cut(s) 431
GlaI GCGC 1 cut(s) 431
GluI GCNGC 4 cut(s) 167, 360, 428, 995
HaeIII GGCC 3 cut(s) 153, 240, 821
HapII CCGG 1 cut(s) 1139
HhaI GCGC 1 cut(s) 432
Hin1II CATG 6 cut(s) 35, 79, 326, 533, 857, 905
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HindIII AAGCTT 1 cut(s) 1295
HinfI GANTC 1 cut(s) 781
HpaII CCGG 1 cut(s) 1139
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 2 cut(s) 84, 505
Hpy188I TCNGA 6 cut(s) 176, 388, 489, 700, 981, 1309
Hpy188III TCNNGA 9 cut(s) 32, 317, 470, 530, 872, 902, 1022, 1108, 1210
Hpy8I GTNNAC 2 cut(s) 84, 505
HpyAV CCTTC 4 cut(s) 59, 147, 856, 1137
HpyCH4III ACNGT 5 cut(s) 15, 220, 344, 580, 967
HpyCH4V TGCA 9 cut(s) 276, 395, 505, 569, 614, 719, 959, 994, 1261
HpyF10VI GCNNNNNNNGC 1 cut(s) 994
HpyF3I CTNAG 7 cut(s) 173, 455, 785, 823, 984, 1093, 1219
Hsp92II CATG 6 cut(s) 35, 79, 326, 533, 857, 905
HspAI GCGC 1 cut(s) 430
KpnI GGTACC 1 cut(s) 267
Ksp22I TGATCA 1 cut(s) 1104
Kzo9I GATC 5 cut(s) 401, 513, 673, 1104, 1236
LmnI GCTCC 3 cut(s) 380, 490, 1381
Lsp1109I GCAGC 3 cut(s) 346, 414, 1006
LweI GCATC 6 cut(s) 392, 441, 804, 981, 1087, 1221
MaeI CTAG 5 cut(s) 24, 149, 209, 365, 1131
MaeIII GTNAC 5 cut(s) 19, 317, 344, 1115, 1324
MalI GATC 5 cut(s) 403, 515, 675, 1106, 1238
MboI GATC 5 cut(s) 401, 513, 673, 1104, 1236
MfeI CAATTG 2 cut(s) 37, 354
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 4 cut(s) 290, 507, 1138, 1386
MmeI TCCRAC 3 cut(s) 280, 363, 411
MnlI CCTC 7 cut(s) 165, 414, 490, 493, 832, 890, 1188
MroXI GAANNNNTTC 2 cut(s) 48, 975
MseI TTAA 1 cut(s) 1393
MslI CAYNNNNRTG 4 cut(s) 13, 281, 906, 1095
MspI CCGG 1 cut(s) 1139
MspR9I CCNGG 2 cut(s) 1139, 1366
MunI CAATTG 2 cut(s) 37, 354
Mva1269I GAATGC 1 cut(s) 1261
MvaI CCWGG 1 cut(s) 1366
MvnI CGCG 1 cut(s) 770
MwoI GCNNNNNNNGC 1 cut(s) 994
NciI CCSGG 1 cut(s) 1139
NdeI CATATG 1 cut(s) 376
NdeII GATC 5 cut(s) 401, 513, 673, 1104, 1236
NlaIII CATG 6 cut(s) 35, 79, 326, 533, 857, 905
NlaIV GGNNCC 2 cut(s) 265, 544
NmuCI GTSAC 4 cut(s) 317, 344, 1115, 1324
NsbI TGCGCA 1 cut(s) 431
PagI TCATGA 3 cut(s) 31, 529, 901
PctI GAATGC 1 cut(s) 1261
PdmI GAANNNNTTC 2 cut(s) 48, 975
PfeI GAWTC 1 cut(s) 781
PflMI CCANNNNNTGG 1 cut(s) 191
PkrI GCNGC 4 cut(s) 168, 361, 429, 996
Psp124BI GAGCTC 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 1364
PspGI CCWGG 1 cut(s) 1364
PspN4I GGNNCC 2 cut(s) 265, 544
PspPI GGNCC 2 cut(s) 152, 239
PsrI GAACNNNNNNTAC 2 cut(s) 937, 969
PsuI RGATCY 1 cut(s) 673
RsaI GTAC 4 cut(s) 196, 265, 843, 1356
RsaNI GTAC 4 cut(s) 195, 264, 842, 1355
RseI CAYNNNNRTG 4 cut(s) 13, 281, 906, 1095
SacI GAGCTC 1 cut(s) 290
SaqAI TTAA 1 cut(s) 1393
SatI GCNGC 4 cut(s) 167, 360, 428, 995
Sau3AI GATC 5 cut(s) 401, 513, 673, 1104, 1236
Sau96I GGNCC 2 cut(s) 152, 239
ScrFI CCNGG 2 cut(s) 1139, 1366
SduI GDGCHC 4 cut(s) 290, 507, 1138, 1386
SfaNI GCATC 6 cut(s) 392, 441, 804, 981, 1087, 1221
SfcI CTRYAG 1 cut(s) 646
SmiMI CAYNNNNRTG 4 cut(s) 13, 281, 906, 1095
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
SsiI CCGC 2 cut(s) 167, 768
SspMI CTAG 5 cut(s) 24, 149, 209, 365, 1131
SstI GAGCTC 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 1137, 1364
TaaI ACNGT 5 cut(s) 15, 220, 344, 580, 967
TaqI TCGA 3 cut(s) 512, 1209, 1269
TatI WGTACW 1 cut(s) 841
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 1 cut(s) 781
Tru1I TTAA 1 cut(s) 1393
Tru9I TTAA 1 cut(s) 1393
TscAI CASTG 3 cut(s) 18, 972, 1126
TseFI GTSAC 4 cut(s) 317, 344, 1115, 1324
TseI GCWGC 3 cut(s) 359, 427, 994
Tsp45I GTSAC 4 cut(s) 317, 344, 1115, 1324
TspDTI ATGAA 6 cut(s) 64, 129, 824, 870, 918, 1242
TspRI CASTG 3 cut(s) 18, 972, 1126
Van91I CCANNNNNTGG 1 cut(s) 191
VneI GTGCAC 1 cut(s) 503
XapI RAATTY 3 cut(s) 212, 875, 1313
XmnI GAANNNNTTC 2 cut(s) 48, 975
XspI CTAG 5 cut(s) 24, 149, 209, 365, 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.