Rmu_sc0001030.1_g000005

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001030.1
OG0000490
Physical Location & Seq
Reverse (-)
35206 .. 36077
872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001030.1_g000005.1.cds

Sequence Viewer

Length: 747 bp
atgcattataccttggccaaaggtgaaaggaaagactttctgcaattcgccttggaatatcataatcatgaagatagtgcaacattgattacaatgcaacaactgaaggcagtactcatggacattgtggtaggcggaaccgagaccgtgacggcaatggtggaatgggtaatggctgagatgatgcagcatccagaagaaatgaaaaaagttcaagaagaacttacagaagttgtggggctgaacaatttggttgaagagtttcatttgccgaaattacatcacttggatgctgtggtcaaggagacatttcgattgcacctcgcactgccccttctagtgccccgctgtccaagcgaatctgccaccattggtggctataccatactgagaggtaccactgtcttcatgaatgcttgggccatacatagggacccgagtctttgggacaaccccttggagtttagaccccagaggttcctggatcctagcaacaagttcgattacatgggcaataagtttcagtatgttccatttggctctgggagaagaatatgtgctggacttcccttggctgagaggatgttaacctttgaattggcttcattcttgcattcgtttgagtggcgattgcccaatgacacgaagcttaacctttcagaaaattttgggcttgtggtgaagaagatggctccattgtttgccattgcaacacccaggttatcgagattcgagctctatacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

248

Amino Acids

28.55

Weight (kDa)

6.06

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 395
AccB1I GGYRCC 1 cut(s) 395
AciI CCGC 2 cut(s) 135, 346
AclWI GGATC 2 cut(s) 479, 492
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 1 cut(s) 664
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 2 cut(s) 114, 397
AfiI CCNNNNNNNGG 1 cut(s) 429
AgsI TTSAA 3 cut(s) 215, 257, 596
AjnI CCWGG 2 cut(s) 480, 716
AluBI AGCT 2 cut(s) 649, 736
AluI AGCT 2 cut(s) 649, 736
Alw21I GWGCWC 1 cut(s) 738
Alw26I GTCTC 2 cut(s) 137, 299
AlwI GGATC 2 cut(s) 479, 492
Ama87I CYCGRG 1 cut(s) 436
AoxI GGCC 2 cut(s) 15, 420
ApeKI GCWGC 1 cut(s) 187
ApoI RAATTY 1 cut(s) 664
Asp700I GAANNNNTTC 1 cut(s) 261
Asp718I GGTACC 1 cut(s) 395
AspS9I GGNCC 2 cut(s) 420, 433
AsuHPI GGTGA 2 cut(s) 35, 691
AvaI CYCGRG 1 cut(s) 436
AvaII GGWCC 1 cut(s) 433
BaeGI GKGCMC 1 cut(s) 345
BaeI ACNNNNGTAYC 2 cut(s) 387, 420
BalI TGGCCA 1 cut(s) 17
BamHI GGATCC 1 cut(s) 484
BanI GGYRCC 1 cut(s) 395
BanII GRGCYC 1 cut(s) 738
BbsI GAAGAC 1 cut(s) 397
Bbv12I GWGCWC 1 cut(s) 738
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 682
BceAI ACGGC 1 cut(s) 168
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BciT130I CCWGG 2 cut(s) 482, 718
BcoDI GTCTC 2 cut(s) 137, 299
BfaI CTAG 2 cut(s) 338, 489
BisI GCNGC 1 cut(s) 188
BlsI GCNGC 1 cut(s) 189
BmcAI AGTACT 1 cut(s) 114
Bme1390I CCNGG 2 cut(s) 482, 718
Bme18I GGWCC 1 cut(s) 433
BmeT110I CYCGRG 1 cut(s) 436
BmgT120I GGNCC 2 cut(s) 420, 433
BmiI GGNNCC 7 cut(s) 139, 397, 434, 435, 479, 486, 693
BmrFI CCNGG 2 cut(s) 482, 718
BmsI GCATC 3 cut(s) 174, 199, 280
BoxI GACNNNNGTC 1 cut(s) 438
BpiI GAAGAC 1 cut(s) 397
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 5 cut(s) 12, 51, 456, 570, 716
Bsc4I CCNNNNNNNGG 1 cut(s) 429
Bse3DI GCAATG 2 cut(s) 162, 705
BseBI CCWGG 2 cut(s) 482, 718
BseDI CCNNGG 5 cut(s) 12, 51, 456, 570, 716
BseGI GGATG 3 cut(s) 190, 295, 588
BseLI CCNNNNNNNGG 1 cut(s) 429
BseMI GCAATG 2 cut(s) 162, 705
BseMII CTCAG 3 cut(s) 168, 380, 567
BseSI GKGCMC 1 cut(s) 345
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 2 cut(s) 17, 422
BshNI GGYRCC 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 738
BsiHKCI CYCGRG 1 cut(s) 436
BslFI GGGAC 2 cut(s) 446, 461
BslI CCNNNNNNNGG 1 cut(s) 429
BsmAI GTCTC 2 cut(s) 137, 299
BsmFI GGGAC 2 cut(s) 446, 461
BsmI GAATGC 2 cut(s) 418, 613
BsnI GGCC 2 cut(s) 17, 422
Bso31I GGTCTC 1 cut(s) 137
BsoBI CYCGRG 1 cut(s) 436
Bsp1286I GDGCHC 2 cut(s) 345, 738
Bsp143I GATC 1 cut(s) 484
BspACI CCGC 2 cut(s) 135, 346
BspANI GGCC 2 cut(s) 17, 422
BspCNI CTCAG 3 cut(s) 169, 381, 568
BspHI TCATGA 2 cut(s) 67, 408
BspLI GGNNCC 7 cut(s) 139, 397, 434, 435, 479, 486, 693
BspPI GGATC 2 cut(s) 479, 492
BspT107I GGYRCC 1 cut(s) 395
BspTNI GGTCTC 1 cut(s) 137
BsrDI GCAATG 2 cut(s) 162, 705
BssECI CCNNGG 5 cut(s) 12, 51, 456, 570, 716
BssMI GATC 1 cut(s) 484
BssT1I CCWWGG 4 cut(s) 12, 51, 456, 570
Bst2UI CCWGG 2 cut(s) 482, 718
Bst4CI ACNGT 2 cut(s) 148, 403
Bst6I CTCTTC 1 cut(s) 252
BstDEI CTNAG 3 cut(s) 177, 389, 576
BstF5I GGATG 3 cut(s) 190, 295, 588
BstKTI GATC 1 cut(s) 487
BstMAI GTCTC 2 cut(s) 137, 299
BstMBI GATC 1 cut(s) 484
BstMWI GCNNNNNNNGC 1 cut(s) 354
BstNI CCWGG 2 cut(s) 482, 718
BstPAI GACNNNNGTC 1 cut(s) 438
BstSCI CCNGG 2 cut(s) 480, 716
BstSLI GKGCMC 1 cut(s) 345
BstV1I GCAGC 1 cut(s) 199
BstV2I GAAGAC 1 cut(s) 397
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BsuRI GGCC 2 cut(s) 17, 422
BtsCI GGATG 3 cut(s) 190, 295, 588
BtsI GCAGTG 1 cut(s) 326
BtsIMutI CAGTG 2 cut(s) 326, 399
CciI TCATGA 2 cut(s) 67, 408
Cfr13I GGNCC 2 cut(s) 420, 433
Csp6I GTAC 2 cut(s) 113, 396
CviAII CATG 4 cut(s) 68, 118, 409, 508
CviQI GTAC 2 cut(s) 113, 396
DdeI CTNAG 3 cut(s) 177, 389, 576
DpnI GATC 1 cut(s) 486
DpnII GATC 1 cut(s) 484
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
EciI GGCGGA 1 cut(s) 150
Ecl136II GAGCTC 1 cut(s) 736
Eco130I CCWWGG 4 cut(s) 12, 51, 456, 570
Eco24I GRGCYC 1 cut(s) 738
Eco31I GGTCTC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 433
Eco53kI GAGCTC 1 cut(s) 736
Eco57I CTGAAG 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 436
EcoICRI GAGCTC 1 cut(s) 736
EcoO109I RGGNCCY 1 cut(s) 433
EcoRII CCWGG 2 cut(s) 480, 716
EcoT14I CCWWGG 4 cut(s) 12, 51, 456, 570
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 738
ErhI CCWWGG 4 cut(s) 12, 51, 456, 570
FaeI CATG 4 cut(s) 71, 121, 412, 511
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FaqI GGGAC 2 cut(s) 446, 461
FatI CATG 4 cut(s) 67, 117, 408, 507
FauI CCCGC 1 cut(s) 353
Fnu4HI GCNGC 1 cut(s) 188
FokI GGATG 3 cut(s) 177, 302, 595
FriOI GRGCYC 1 cut(s) 738
Fsp4HI GCNGC 1 cut(s) 188
FspBI CTAG 2 cut(s) 338, 489
GluI GCNGC 1 cut(s) 188
HaeIII GGCC 2 cut(s) 17, 422
Hin1II CATG 4 cut(s) 71, 121, 412, 511
HincII GTYRAC 1 cut(s) 588
HindII GTYRAC 1 cut(s) 588
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 3 cut(s) 359, 439, 729
HpaI GTTAAC 1 cut(s) 588
HphI GGTGA 2 cut(s) 35, 691
Hpy166II GTNNAC 1 cut(s) 588
Hpy188I TCNGA 1 cut(s) 661
Hpy188III TCNNGA 5 cut(s) 68, 194, 215, 409, 726
Hpy8I GTNNAC 1 cut(s) 588
HpyAV CCTTC 2 cut(s) 100, 344
HpyCH4III ACNGT 2 cut(s) 148, 403
HpyCH4V TGCA 8 cut(s) 4, 43, 80, 97, 187, 319, 613, 710
HpyF10VI GCNNNNNNNGC 1 cut(s) 354
HpyF3I CTNAG 3 cut(s) 177, 389, 576
Hsp92II CATG 4 cut(s) 71, 121, 412, 511
KflI GGGWCCC 1 cut(s) 433
KpnI GGTACC 1 cut(s) 399
KspAI GTTAAC 1 cut(s) 588
Kzo9I GATC 1 cut(s) 484
LmnI GCTCC 1 cut(s) 697
LpnPI CCDG 8 cut(s) 207, 467, 485, 494, 528, 546, 703, 730
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 3 cut(s) 174, 199, 280
MaeI CTAG 2 cut(s) 338, 489
MaeIII GTNAC 1 cut(s) 148
MalI GATC 1 cut(s) 486
MboI GATC 1 cut(s) 484
MboII GAAGA 8 cut(s) 83, 209, 230, 269, 397, 561, 694, 697
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 2 cut(s) 345, 738
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 5 cut(s) 44, 247, 275, 596, 664
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 448
MnlI CCTC 4 cut(s) 332, 386, 468, 573
Mox20I TGGCCA 1 cut(s) 17
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 261
MscI TGGCCA 1 cut(s) 17
MseI TTAA 3 cut(s) 587, 651, 745
MslI CAYNNNNRTG 2 cut(s) 66, 288
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 348
MspR9I CCNGG 2 cut(s) 482, 718
Mva1269I GAATGC 2 cut(s) 418, 613
MvaI CCWGG 2 cut(s) 482, 718
MwoI GCNNNNNNNGC 1 cut(s) 354
NdeII GATC 1 cut(s) 484
NlaIII CATG 4 cut(s) 71, 121, 412, 511
NlaIV GGNNCC 7 cut(s) 139, 397, 434, 435, 479, 486, 693
NmuCI GTSAC 1 cut(s) 148
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 2 cut(s) 67, 408
PctI GAATGC 2 cut(s) 418, 613
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 2 cut(s) 359, 729
PfoI TCCNGGA 1 cut(s) 480
PkrI GCNGC 1 cut(s) 189
PleI GAGTC 1 cut(s) 447
PpsI GAGTC 1 cut(s) 447
PpuMI RGGWCCY 1 cut(s) 433
PshAI GACNNNNGTC 1 cut(s) 438
Psp124BI GAGCTC 1 cut(s) 738
Psp5II RGGWCCY 1 cut(s) 433
Psp6I CCWGG 2 cut(s) 480, 716
PspGI CCWGG 2 cut(s) 480, 716
PspN4I GGNNCC 7 cut(s) 139, 397, 434, 435, 479, 486, 693
PspPI GGNCC 2 cut(s) 420, 433
PspPPI RGGWCCY 1 cut(s) 433
PsuI RGATCY 1 cut(s) 484
RsaI GTAC 2 cut(s) 114, 397
RsaNI GTAC 2 cut(s) 113, 396
RseI CAYNNNNRTG 2 cut(s) 66, 288
SacI GAGCTC 1 cut(s) 738
SaqAI TTAA 3 cut(s) 587, 651, 745
SatI GCNGC 1 cut(s) 188
Sau3AI GATC 1 cut(s) 484
Sau96I GGNCC 2 cut(s) 420, 433
ScaI AGTACT 1 cut(s) 114
SchI GAGTC 1 cut(s) 448
ScrFI CCNGG 2 cut(s) 482, 718
SduI GDGCHC 2 cut(s) 345, 738
SfaNI GCATC 3 cut(s) 174, 199, 280
SinI GGWCC 1 cut(s) 433
SmiMI CAYNNNNRTG 2 cut(s) 66, 288
Sse9I AATT 5 cut(s) 44, 247, 275, 596, 664
SsiI CCGC 2 cut(s) 135, 346
SspMI CTAG 2 cut(s) 338, 489
SstI GAGCTC 1 cut(s) 738
StyD4I CCNGG 2 cut(s) 480, 716
StyI CCWWGG 4 cut(s) 12, 51, 456, 570
TaaI ACNGT 2 cut(s) 148, 403
TaqI TCGA 4 cut(s) 313, 501, 725, 732
TasI AATT 5 cut(s) 44, 247, 275, 596, 664
TatI WGTACW 1 cut(s) 112
TfiI GAWTC 2 cut(s) 359, 729
Tru1I TTAA 3 cut(s) 587, 651, 745
Tru9I TTAA 3 cut(s) 587, 651, 745
TscAI CASTG 2 cut(s) 333, 406
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 6 cut(s) 84, 218, 254, 397, 425, 594
TspRI CASTG 2 cut(s) 333, 406
VpaK11BI GGWCC 1 cut(s) 433
XapI RAATTY 1 cut(s) 664
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 2 cut(s) 338, 489
ZrmI AGTACT 1 cut(s) 114
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.