Rh7DG198900

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000490
Physical Location & Seq
Reverse (-)
18740525 .. 18742692
2168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG198900.1

Sequence Viewer

Length: 1122 bp
ATGGGGTCATCACTGTGGGTTACTAGCAATCATGACAAAGGGGAAAACCTTCCAGCAATTTCCACACTCTTGTTCATGGTGTTTACTCTGCTCTGGTTCTTCTGGATTTGGAAGAAACCGAATAGGAACCCTACACCTCCATTGCCACCAGGCCCTCGTGGTTTGCCGCTACTCGGATATCTTCCATTTCTTGGTACAAACCTCCACCTAGAATTCGCAGACATGGCAAGGGTTTATGGCCCAATTTACAAACTCCAACTTGGTACCAAGTTGTGGATTGTGGTCAGCTCACCTGAGCTTGTGAAACAAGTGGTTCGTGACCATGACACAACATTTTCAAACCGTGATCCTACAGTTGCTGCTCTAATTGCCTCATATGGAGCAACCGACATAGCCTTTGGATCCTATGGTTCAGATTGGAGGAAGCTGCGCAAGGTGTTTGTGGGTCTGGTGCTAAGCAAAACCAACCTTGATAATTGCTATGCTCTGAGAAAAGAGGAAATGCACAAGTCGATCAGTCAGATATATCATGACAAAATTGGAACCCCAACTGATTTGGGTGGGTTTGCATTTTCCACAGCAATCAACACAATCTTGCGTATGCTATGGGGTGCCACTCCACAAGGTGAGAAGGGGAGTGACTATGGGAAACAGTATAGAAAAGTGATGGCAGAAATGGTTTATCTACTTGGGAAACCAAACATTTCGGACTATTTTCCTGCGCTTGCAAGGTTTGACATACAAGGAATTGAGAGGCAAGCAAAGAAGGTTCAATCCGAGATTGACAAGATTCTAACTTGTGCCATAGAAGAACGGATGAAGAAGCTGGCCTCGGGTGAAAATGGGGGAGTACAACAAAAACATGAAAGGAAGGACTTTCTGCAGTTGCTCTTGGAGAGCAATAATTCTCATGAAGACGGTTCAACATCCGTTAGGGTGCAACAATTGAAGGGCATGCTCGCGAAACCTTGGTTCTCTAGTCAGGAGCAACTGGTTGCTTTTGCAGAACCTCATTTGTTCATGACCAATCTACTCTGCCCAAAAATAGCCCGAGCAGCCTTGGTCGAGTCTCTCCTTGCTTTAAGTAGCCAAACATGTACTCAAAGACTCTGCAACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

373

Amino Acids

41.92

Weight (kDa)

9.25

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 49 - 308 1.2e-31 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 431
Acc65I GGTACC 1 cut(s) 263
AccB1I GGYRCC 2 cut(s) 263, 611
AccB7I CCANNNNNTGG 2 cut(s) 191, 273
AccII CGCG 1 cut(s) 962
AciI CCGC 1 cut(s) 167
AclWI GGATC 3 cut(s) 341, 396, 409
AcsI RAATTY 1 cut(s) 212
AdeI CACNNNGTG 1 cut(s) 626
AfaI GTAC 4 cut(s) 196, 265, 852, 1099
AfiI CCNNNNNNNGG 3 cut(s) 173, 191, 273
AflIII ACRYGT 1 cut(s) 1094
AgsI TTSAA 4 cut(s) 339, 773, 924, 949
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 4 cut(s) 288, 298, 427, 826
AluI AGCT 4 cut(s) 288, 298, 427, 826
Alw26I GTCTC 1 cut(s) 1074
AlwI GGATC 3 cut(s) 341, 396, 409
AlwNI CAGNNNCTG 1 cut(s) 359
Ama87I CYCGRG 2 cut(s) 832, 1050
AoxI GGCC 3 cut(s) 151, 238, 828
ApeKI GCWGC 3 cut(s) 359, 427, 1055
ApoI RAATTY 1 cut(s) 212
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
Asp700I GAANNNNTTC 1 cut(s) 48
Asp718I GGTACC 1 cut(s) 263
AspLEI GCGC 2 cut(s) 432, 724
AspS9I GGNCC 2 cut(s) 152, 239
AsuHPI GGTGA 3 cut(s) 282, 638, 848
AvaI CYCGRG 2 cut(s) 832, 1050
BamHI GGATCC 1 cut(s) 401
BanI GGYRCC 2 cut(s) 263, 611
BauI CACGAG 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 921
BbvI GCAGC 3 cut(s) 346, 414, 1067
BccI CCATC 1 cut(s) 661
BciT130I CCWGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 1074
BfaI CTAG 3 cut(s) 24, 209, 978
BfmI CTRYAG 2 cut(s) 351, 881
BisI GCNGC 4 cut(s) 167, 360, 428, 1056
BlpI GCTNAGC 1 cut(s) 455
BlsI GCNGC 4 cut(s) 168, 361, 429, 1057
Bme1390I CCNGG 1 cut(s) 150
BmeT110I CYCGRG 2 cut(s) 832, 1050
BmgT120I GGNCC 2 cut(s) 152, 239
BmiI GGNNCC 5 cut(s) 128, 265, 403, 544, 613
BmrFI CCNGG 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 921
Bpu10I CCTNAGC 1 cut(s) 294
Bpu1102I GCTNAGC 1 cut(s) 455
BsaJI CCNNGG 3 cut(s) 831, 968, 1059
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 191, 273
Bse1I ACTGG 1 cut(s) 996
Bse3DI GCAATG 1 cut(s) 140
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 3 cut(s) 831, 968, 1059
BseGI GGATG 2 cut(s) 822, 926
BseLI CCNNNNNNNGG 3 cut(s) 173, 191, 273
BseMI GCAATG 1 cut(s) 140
BseMII CTCAG 2 cut(s) 285, 479
BseNI ACTGG 1 cut(s) 996
BseXI GCAGC 3 cut(s) 346, 414, 1067
Bsh1236I CGCG 1 cut(s) 962
BshFI GGCC 3 cut(s) 153, 240, 830
BshNI GGYRCC 2 cut(s) 263, 611
BsiHKCI CYCGRG 2 cut(s) 832, 1050
BslI CCNNNNNNNGG 3 cut(s) 173, 191, 273
BsmAI GTCTC 1 cut(s) 1074
BsnI GGCC 3 cut(s) 153, 240, 830
BsoBI CYCGRG 2 cut(s) 832, 1050
Bsp143I GATC 3 cut(s) 346, 401, 513
Bsp1720I GCTNAGC 1 cut(s) 455
Bsp68I TCGCGA 1 cut(s) 962
BspACI CCGC 1 cut(s) 167
BspANI GGCC 3 cut(s) 153, 240, 830
BspCNI CTCAG 2 cut(s) 286, 480
BspFNI CGCG 1 cut(s) 962
BspHI TCATGA 4 cut(s) 31, 529, 910, 1020
BspLI GGNNCC 5 cut(s) 128, 265, 403, 544, 613
BspMAI CTGCAG 1 cut(s) 885
BspPI GGATC 3 cut(s) 341, 396, 409
BspT107I GGYRCC 2 cut(s) 263, 611
BsrDI GCAATG 1 cut(s) 140
BsrI ACTGG 1 cut(s) 996
BssECI CCNNGG 3 cut(s) 831, 968, 1059
BssMI GATC 3 cut(s) 346, 401, 513
BssSI CACGAG 1 cut(s) 156
BssT1I CCWWGG 2 cut(s) 968, 1059
Bst2BI CACGAG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 5 cut(s) 15, 344, 355, 654, 920
BstC8I GCNNGC 5 cut(s) 726, 759, 828, 956, 960
BstDEI CTNAG 3 cut(s) 294, 455, 488
BstF5I GGATG 2 cut(s) 822, 926
BstFNI CGCG 1 cut(s) 962
BstHHI GCGC 2 cut(s) 432, 724
BstKTI GATC 3 cut(s) 349, 404, 516
BstMAI GTCTC 1 cut(s) 1074
BstMBI GATC 3 cut(s) 346, 401, 513
BstMWI GCNNNNNNNGC 3 cut(s) 224, 368, 1055
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 2 cut(s) 958, 1098
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 2 cut(s) 351, 881
BstUI CGCG 1 cut(s) 962
BstV1I GCAGC 3 cut(s) 346, 414, 1067
BstV2I GAAGAC 1 cut(s) 921
BstX2I RGATCY 1 cut(s) 401
BstYI RGATCY 1 cut(s) 401
BsuRI GGCC 3 cut(s) 153, 240, 830
BtsCI GGATG 2 cut(s) 822, 926
BtsIMutI CAGTG 1 cut(s) 11
BtuMI TCGCGA 1 cut(s) 962
Cac8I GCNNGC 5 cut(s) 726, 759, 828, 956, 960
CaiI CAGNNNCTG 1 cut(s) 359
CciI TCATGA 4 cut(s) 31, 529, 910, 1020
CfoI GCGC 2 cut(s) 432, 724
Cfr13I GGNCC 2 cut(s) 152, 239
Csp6I GTAC 4 cut(s) 195, 264, 851, 1098
CviQI GTAC 4 cut(s) 195, 264, 851, 1098
DdeI CTNAG 3 cut(s) 294, 455, 488
DpnI GATC 3 cut(s) 348, 403, 515
DpnII GATC 3 cut(s) 346, 401, 513
DraIII CACNNNGTG 1 cut(s) 626
Eco130I CCWWGG 2 cut(s) 968, 1059
Eco32I GATATC 1 cut(s) 179
Eco88I CYCGRG 2 cut(s) 832, 1050
EcoO109I RGGNCCY 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 148
EcoRV GATATC 1 cut(s) 179
EcoT14I CCWWGG 2 cut(s) 968, 1059
ErhI CCWWGG 2 cut(s) 968, 1059
FauNDI CATATG 1 cut(s) 376
Fnu4HI GCNGC 4 cut(s) 167, 360, 428, 1056
FokI GGATG 2 cut(s) 829, 913
Fsp4HI GCNGC 4 cut(s) 167, 360, 428, 1056
FspBI CTAG 3 cut(s) 24, 209, 978
FspI TGCGCA 1 cut(s) 431
GlaI GCGC 2 cut(s) 431, 723
GluI GCNGC 4 cut(s) 167, 360, 428, 1056
HaeIII GGCC 3 cut(s) 153, 240, 830
HhaI GCGC 2 cut(s) 432, 724
Hin6I GCGC 2 cut(s) 430, 722
HinP1I GCGC 2 cut(s) 430, 722
HinfI GANTC 3 cut(s) 790, 1067, 1107
HphI GGTGA 3 cut(s) 282, 638, 848
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 6 cut(s) 176, 415, 489, 522, 709, 778
Hpy188III TCNNGA 8 cut(s) 32, 103, 317, 530, 911, 961, 983, 1021
Hpy8I GTNNAC 1 cut(s) 84
HpyAV CCTTC 5 cut(s) 59, 625, 760, 865, 943
HpyCH4III ACNGT 5 cut(s) 15, 344, 355, 654, 920
HpyCH4V TGCA 7 cut(s) 505, 569, 728, 883, 940, 1004, 1113
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 368, 1055
HpyF3I CTNAG 3 cut(s) 294, 455, 488
HspAI GCGC 2 cut(s) 430, 722
KpnI GGTACC 1 cut(s) 267
Kzo9I GATC 3 cut(s) 346, 401, 513
LmnI GCTCC 2 cut(s) 380, 985
Lsp1109I GCAGC 3 cut(s) 346, 414, 1067
MaeI CTAG 3 cut(s) 24, 209, 978
MaeIII GTNAC 3 cut(s) 19, 317, 638
MalI GATC 3 cut(s) 348, 403, 515
MboI GATC 3 cut(s) 346, 401, 513
MboII GAAGA 6 cut(s) 91, 124, 173, 821, 832, 926
MfeI CAATTG 1 cut(s) 944
MflI RGATCY 1 cut(s) 401
MluCI AATT 9 cut(s) 57, 212, 243, 366, 475, 537, 747, 904, 944
MlyI GAGTC 2 cut(s) 1076, 1101
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 9 cut(s) 147, 165, 212, 382, 414, 490, 747, 841, 1020
MroXI GAANNNNTTC 1 cut(s) 48
MseI TTAA 1 cut(s) 1082
MslI CAYNNNNRTG 1 cut(s) 13
MspR9I CCNGG 1 cut(s) 150
MunI CAATTG 1 cut(s) 944
MvaI CCWGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 962
MwoI GCNNNNNNNGC 3 cut(s) 224, 368, 1055
NdeI CATATG 1 cut(s) 376
NdeII GATC 3 cut(s) 346, 401, 513
NlaIV GGNNCC 5 cut(s) 128, 265, 403, 544, 613
NmuCI GTSAC 2 cut(s) 317, 638
NruI TCGCGA 1 cut(s) 962
NsbI TGCGCA 1 cut(s) 431
NspI RCATGY 2 cut(s) 958, 1098
PaeI GCATGC 1 cut(s) 958
PagI TCATGA 4 cut(s) 31, 529, 910, 1020
PciI ACATGT 1 cut(s) 1094
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 1 cut(s) 790
PflMI CCANNNNNTGG 2 cut(s) 191, 273
PkrI GCNGC 4 cut(s) 168, 361, 429, 1057
PleI GAGTC 2 cut(s) 1075, 1101
PpsI GAGTC 2 cut(s) 1075, 1101
PscI ACATGT 1 cut(s) 1094
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 5 cut(s) 128, 265, 403, 544, 613
PspPI GGNCC 2 cut(s) 152, 239
PstI CTGCAG 1 cut(s) 885
PstNI CAGNNNCTG 1 cut(s) 359
PsuI RGATCY 1 cut(s) 401
RruI TCGCGA 1 cut(s) 962
RsaI GTAC 4 cut(s) 196, 265, 852, 1099
RsaNI GTAC 4 cut(s) 195, 264, 851, 1098
RseI CAYNNNNRTG 1 cut(s) 13
SaqAI TTAA 1 cut(s) 1082
SatI GCNGC 4 cut(s) 167, 360, 428, 1056
Sau3AI GATC 3 cut(s) 346, 401, 513
Sau96I GGNCC 2 cut(s) 152, 239
SchI GAGTC 2 cut(s) 1076, 1101
ScrFI CCNGG 1 cut(s) 150
SfcI CTRYAG 2 cut(s) 351, 881
SmiMI CAYNNNNRTG 1 cut(s) 13
SphI GCATGC 1 cut(s) 958
Sse9I AATT 9 cut(s) 57, 212, 243, 366, 475, 537, 747, 904, 944
SsiI CCGC 1 cut(s) 167
SspMI CTAG 3 cut(s) 24, 209, 978
StyD4I CCNGG 1 cut(s) 148
StyI CCWWGG 2 cut(s) 968, 1059
TaaI ACNGT 5 cut(s) 15, 344, 355, 654, 920
TaqI TCGA 2 cut(s) 512, 1065
TasI AATT 9 cut(s) 57, 212, 243, 366, 475, 537, 747, 904, 944
TatI WGTACW 2 cut(s) 850, 1097
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 1 cut(s) 790
Tru1I TTAA 1 cut(s) 1082
Tru9I TTAA 1 cut(s) 1082
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 2 cut(s) 317, 638
TseI GCWGC 3 cut(s) 359, 427, 1055
Tsp45I GTSAC 2 cut(s) 317, 638
TspDTI ATGAA 5 cut(s) 64, 833, 879, 927, 1009
TspGWI ACGGA 2 cut(s) 829, 919
TspRI CASTG 1 cut(s) 18
Van91I CCANNNNNTGG 2 cut(s) 191, 273
XapI RAATTY 1 cut(s) 212
XceI RCATGY 2 cut(s) 958, 1098
XmnI GAANNNNTTC 1 cut(s) 48
XspI CTAG 3 cut(s) 24, 209, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.