Rh3CG072700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000490
Physical Location & Seq
Reverse (-)
5517948 .. 5518525
578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG072700.1

Sequence Viewer

Length: 414 bp
ATGTGGGTCTATGCAATTGTACCAAACAAAGTTGTGCATAATTTAAAATCAACATTGCTCTTAGAGCACCACAACGATGAAACACCAAAGAGCATAGCACAAACCAGAGTCAATGACAATCCACTTGCCTCCCTCTTTCCCTTCAATAGTGGGAAGCACCATGTGCTGAGCTCCTTTCTGCTTTTGCTTAGACTACTCGGCTTGGGCGATGTTCTTGACGTGCCAGGTGGACCTTCCGGTGGCGAGGACCATGAAATCGGCCCACTTGCAGTGCTTGTTCGTCGGTATGACCTTGACGTCGTCGGCCTTGACTTCGCTGAGAACCGTCTCGACCTCCTGGAGATCAAGCAGGCCTTCCTTGGCGGCGGCGGCGGTGGAGGAGTAGAAGGCCTGGTGCAGAGATGGAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.88

Weight (kDa)

5.8

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 296
AatII GACGTC 1 cut(s) 300
AciI CCGC 4 cut(s) 363, 366, 369, 372
AcyI GRCGYC 1 cut(s) 297
AdeI CACNNNGTG 1 cut(s) 163
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 1 cut(s) 145
AjiI CACGTC 1 cut(s) 220
AjnI CCWGG 3 cut(s) 223, 336, 390
AluBI AGCT 1 cut(s) 171
AluI AGCT 1 cut(s) 171
Alw21I GWGCWC 2 cut(s) 69, 173
Alw26I GTCTC 1 cut(s) 332
AoxI GGCC 4 cut(s) 259, 304, 351, 388
AspS9I GGNCC 3 cut(s) 230, 247, 260
AvaII GGWCC 2 cut(s) 230, 247
BanII GRGCYC 1 cut(s) 173
Bbv12I GWGCWC 2 cut(s) 69, 173
BccI CCATC 1 cut(s) 396
BciT130I CCWGG 3 cut(s) 225, 338, 392
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 1 cut(s) 412
BisI GCNGC 3 cut(s) 364, 367, 370
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 3 cut(s) 365, 368, 371
Bme1390I CCNGG 3 cut(s) 225, 338, 392
Bme18I GGWCC 2 cut(s) 230, 247
BmgBI CACGTC 1 cut(s) 220
BmgT120I GGNCC 3 cut(s) 230, 247, 260
BmrFI CCNGG 3 cut(s) 225, 338, 392
BpmI CTGGAG 1 cut(s) 359
Bpu1102I GCTNAGC 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 358
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 53
BseBI CCWGG 3 cut(s) 225, 338, 392
BseDI CCNNGG 1 cut(s) 358
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 1 cut(s) 53
BseMII CTCAG 2 cut(s) 158, 309
BseRI GAGGAG 1 cut(s) 393
BshFI GGCC 4 cut(s) 261, 306, 353, 390
BsiHKAI GWGCWC 2 cut(s) 69, 173
BsiSI CCGG 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 332
BsmBI CGTCTC 1 cut(s) 332
BsnI GGCC 4 cut(s) 261, 306, 353, 390
Bsp1286I GDGCHC 2 cut(s) 69, 173
Bsp143I GATC 1 cut(s) 342
Bsp1720I GCTNAGC 1 cut(s) 167
BspACI CCGC 4 cut(s) 363, 366, 369, 372
BspANI GGCC 4 cut(s) 261, 306, 353, 390
BspCNI CTCAG 2 cut(s) 159, 310
BsrDI GCAATG 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 1 cut(s) 342
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 358
Bst2UI CCWGG 3 cut(s) 225, 338, 392
Bst4CI ACNGT 1 cut(s) 326
BstACI GRCGYC 1 cut(s) 297
BstAPI GCANNNNNTGC 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 4 cut(s) 61, 167, 188, 318
BstKTI GATC 1 cut(s) 345
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 1 cut(s) 342
BstMWI GCNNNNNNNGC 3 cut(s) 64, 163, 369
BstNI CCWGG 3 cut(s) 225, 338, 392
BstSCI CCNGG 3 cut(s) 223, 336, 390
BsuRI GGCC 4 cut(s) 261, 306, 353, 390
BtgZI GCGATG 1 cut(s) 222
BtrI CACGTC 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 351
Cfr13I GGNCC 3 cut(s) 230, 247, 260
Csp6I GTAC 1 cut(s) 20
CviAII CATG 2 cut(s) 161, 251
CviJI RGCY 6 cut(s) 171, 201, 261, 306, 353, 390
CviKI_1 RGCY 6 cut(s) 171, 201, 261, 306, 353, 390
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 4 cut(s) 61, 167, 188, 318
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
DraI TTTAAA 1 cut(s) 45
DraIII CACNNNGTG 1 cut(s) 163
DrdI GACNNNNNNGTC 1 cut(s) 296
DseDI GACNNNNNNGTC 1 cut(s) 296
Ecl136II GAGCTC 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 358
Eco147I AGGCCT 2 cut(s) 353, 390
Eco24I GRGCYC 1 cut(s) 173
Eco47I GGWCC 2 cut(s) 230, 247
Eco53kI GAGCTC 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 171
EcoRII CCWGG 3 cut(s) 223, 336, 390
EcoT14I CCWWGG 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 173
ErhI CCWWGG 1 cut(s) 358
Esp3I CGTCTC 1 cut(s) 332
FaeI CATG 2 cut(s) 164, 254
FaiI YATR 6 cut(s) 12, 39, 95, 162, 252, 288
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FatI CATG 2 cut(s) 160, 250
Fnu4HI GCNGC 3 cut(s) 364, 367, 370
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 3 cut(s) 364, 367, 370
FspBI CTAG 1 cut(s) 412
GluI GCNGC 3 cut(s) 364, 367, 370
GsuI CTGGAG 1 cut(s) 359
HaeIII GGCC 4 cut(s) 261, 306, 353, 390
HapII CCGG 1 cut(s) 237
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 2 cut(s) 164, 254
HinfI GANTC 1 cut(s) 108
HpaII CCGG 1 cut(s) 237
Hpy166II GTNNAC 1 cut(s) 230
Hpy188III TCNNGA 2 cut(s) 215, 329
Hpy8I GTNNAC 1 cut(s) 230
Hpy99I CGWCG 3 cut(s) 285, 302, 305
HpyAV CCTTC 4 cut(s) 151, 243, 364, 380
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4IV ACGT 2 cut(s) 219, 297
HpyCH4V TGCA 4 cut(s) 14, 37, 269, 397
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 163, 369
HpyF3I CTNAG 4 cut(s) 61, 167, 188, 318
HpySE526I ACGT 2 cut(s) 219, 297
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 2 cut(s) 164, 254
Kzo9I GATC 1 cut(s) 342
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 9 cut(s) 118, 210, 237, 250, 323, 335, 350, 377, 404
MaeI CTAG 1 cut(s) 412
MaeII ACGT 2 cut(s) 219, 297
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MfeI CAATTG 1 cut(s) 15
MhlI GDGCHC 2 cut(s) 69, 173
MluCI AATT 2 cut(s) 15, 40
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 5 cut(s) 139, 143, 238, 344, 371
MseI TTAA 1 cut(s) 44
MslI CAYNNNNRTG 1 cut(s) 75
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 3 cut(s) 225, 338, 392
MunI CAATTG 1 cut(s) 15
MvaI CCWGG 3 cut(s) 225, 338, 392
MwoI GCNNNNNNNGC 3 cut(s) 64, 163, 369
NdeII GATC 1 cut(s) 342
NlaIII CATG 2 cut(s) 164, 254
NmeAIII GCCGAG 1 cut(s) 177
PceI AGGCCT 2 cut(s) 353, 390
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PflFI GACNNNGTC 1 cut(s) 299
PfoI TCCNGGA 1 cut(s) 336
PkrI GCNGC 3 cut(s) 365, 368, 371
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Psp124BI GAGCTC 1 cut(s) 173
Psp6I CCWGG 3 cut(s) 223, 336, 390
PspGI CCWGG 3 cut(s) 223, 336, 390
PspPI GGNCC 3 cut(s) 230, 247, 260
PsyI GACNNNGTC 1 cut(s) 299
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 75
SacI GAGCTC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 3 cut(s) 364, 367, 370
Sau3AI GATC 1 cut(s) 342
Sau96I GGNCC 3 cut(s) 230, 247, 260
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 3 cut(s) 225, 338, 392
SduI GDGCHC 2 cut(s) 69, 173
SetI ASST 7 cut(s) 173, 222, 229, 235, 294, 300, 336
SinI GGWCC 2 cut(s) 230, 247
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 2 cut(s) 15, 40
SseBI AGGCCT 2 cut(s) 353, 390
SsiI CCGC 4 cut(s) 363, 366, 369, 372
SspMI CTAG 1 cut(s) 412
SstI GAGCTC 1 cut(s) 173
StuI AGGCCT 2 cut(s) 353, 390
StyD4I CCNGG 3 cut(s) 223, 336, 390
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 326
TaiI ACGT 2 cut(s) 222, 300
TaqI TCGA 1 cut(s) 330
TasI AATT 2 cut(s) 15, 40
TauI GCSGC 3 cut(s) 366, 369, 372
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 1 cut(s) 276
TspDTI ATGAA 2 cut(s) 93, 267
TspRI CASTG 1 cut(s) 276
Tth111I GACNNNGTC 1 cut(s) 299
VpaK11BI GGWCC 2 cut(s) 230, 247
XspI CTAG 1 cut(s) 412
ZraI GACGTC 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.