RchiOBHm_Chr4g0419931

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000490
Physical Location & Seq
Reverse (-)
45420865 .. 45422583
1719 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38976

Sequence Viewer

Length: 390 bp
ATGTCTGAGCTTTTACAGCATCCAGATGAAATGAGAAAAGTCCAAGCTAGAAGAACTAGCAGAAATTGTGAACCTAGTGTTTGGGACAATCCCTTGGAATTTAGACCTGGGAGGTTCCCAAACACCGACCCCAACAACTGCTTTGATTACTTGGGCAATAAGTTTCAGTATCTTCCATTTGGTTCTTGGAGAAGAATCTGTGCTGGGATTCCCTTGGCGGGGAGGATGTTAATCTATTTGTTGGCTTCATTCTTGCACTCATTCGAGTGGAGGTTGCTTGAGGATACAAAGGTTGACCTTTCGAACAAATTCAGGTTTGTGACTAAGAAGGTGACTCCATTGATTGCTATACCAACGCTCAGGTTAACTAAATTGGAGCTCTATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

129

Amino Acids

15.18

Weight (kDa)

9.51

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 24 - 110 2.1e-16 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 218
AcsI RAATTY 2 cut(s) 98, 308
AfiI CCNNNNNNNGG 2 cut(s) 218, 219
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 3 cut(s) 10, 47, 379
AluI AGCT 3 cut(s) 10, 47, 379
Alw21I GWGCWC 1 cut(s) 381
ApoI RAATTY 2 cut(s) 98, 308
Asp700I GAANNNNTTC 1 cut(s) 308
AsuHPI GGTGA 1 cut(s) 343
AsuII TTCGAA 1 cut(s) 302
BaeI ACNNNNGTAYC 2 cut(s) 276, 309
BanII GRGCYC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 381
BciT130I CCWGG 1 cut(s) 108
BciVI GTATCC 1 cut(s) 277
BfaI CTAG 3 cut(s) 48, 57, 75
BfuI GTATCC 1 cut(s) 277
Bme1390I CCNGG 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 28
Bpu10I CCTNAGC 1 cut(s) 359
Bpu14I TTCGAA 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 299
BsaBI GATNNNNATC 1 cut(s) 230
BsaJI CCNNGG 3 cut(s) 93, 107, 213
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 219
Bse8I GATNNNNATC 1 cut(s) 230
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 3 cut(s) 93, 107, 213
BseGI GGATG 2 cut(s) 19, 231
BseJI GATNNNNATC 1 cut(s) 230
BseLI CCNNNNNNNGG 2 cut(s) 218, 219
BseMII CTCAG 1 cut(s) 373
BseYI CCCAGC 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 381
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 2 cut(s) 218, 219
BsmFI GGGAC 1 cut(s) 98
Bsp119I TTCGAA 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 381
BspACI CCGC 1 cut(s) 218
BspCNI CTCAG 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 116
BspT104I TTCGAA 1 cut(s) 302
BssECI CCNNGG 3 cut(s) 93, 107, 213
BssT1I CCWWGG 2 cut(s) 93, 213
Bst2UI CCWGG 1 cut(s) 108
BstBI TTCGAA 1 cut(s) 302
BstDEI CTNAG 4 cut(s) 6, 324, 359, 387
BstF5I GGATG 2 cut(s) 19, 231
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BsuI GTATCC 1 cut(s) 277
BtsCI GGATG 2 cut(s) 19, 231
CviJI RGCY 4 cut(s) 10, 47, 245, 379
CviKI_1 RGCY 4 cut(s) 10, 47, 245, 379
DdeI CTNAG 4 cut(s) 6, 324, 359, 387
Ecl136II GAGCTC 1 cut(s) 379
Eco130I CCWWGG 2 cut(s) 93, 213
Eco24I GRGCYC 1 cut(s) 381
Eco53kI GAGCTC 1 cut(s) 379
EcoICRI GAGCTC 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 2 cut(s) 93, 213
EcoT38I GRGCYC 1 cut(s) 381
ErhI CCWWGG 2 cut(s) 93, 213
FaiI YATR 2 cut(s) 350, 384
FaqI GGGAC 1 cut(s) 98
FauI CCCGC 1 cut(s) 211
FokI GGATG 2 cut(s) 6, 238
FriOI GRGCYC 1 cut(s) 381
FspBI CTAG 3 cut(s) 48, 57, 75
GsaI CCCAGC 1 cut(s) 207
HincII GTYRAC 2 cut(s) 295, 366
HindII GTYRAC 2 cut(s) 295, 366
HinfI GANTC 3 cut(s) 195, 208, 334
HpaI GTTAAC 1 cut(s) 366
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 3 cut(s) 71, 295, 366
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 3 cut(s) 71, 295, 366
HpyAV CCTTC 1 cut(s) 322
HpyCH4V TGCA 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 4 cut(s) 6, 324, 359, 387
KspAI GTTAAC 1 cut(s) 366
LmnI GCTCC 1 cut(s) 376
LpnPI CCDG 6 cut(s) 36, 93, 120, 189, 298, 346
LweI GCATC 1 cut(s) 28
MaeI CTAG 3 cut(s) 48, 57, 75
MaeIII GTNAC 2 cut(s) 319, 331
MboII GAAGA 3 cut(s) 63, 164, 204
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 4 cut(s) 64, 98, 308, 371
MlyI GAGTC 1 cut(s) 328
MnlI CCTC 4 cut(s) 105, 216, 264, 274
MroXI GAANNNNTTC 1 cut(s) 308
MseI TTAA 2 cut(s) 230, 365
MslI CAYNNNNRTG 2 cut(s) 24, 265
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 16
NlaIV GGNNCC 1 cut(s) 116
NmuCI GTSAC 2 cut(s) 319, 331
NspV TTCGAA 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 2 cut(s) 195, 208
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
Psp124BI GAGCTC 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 203
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 116
RseI CAYNNNNRTG 2 cut(s) 24, 265
SacI GAGCTC 1 cut(s) 381
SaqAI TTAA 2 cut(s) 230, 365
SchI GAGTC 1 cut(s) 328
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 1 cut(s) 28
SfuI TTCGAA 1 cut(s) 302
SmiMI CAYNNNNRTG 2 cut(s) 24, 265
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 4 cut(s) 64, 98, 308, 371
SsiI CCGC 1 cut(s) 218
SspMI CTAG 3 cut(s) 48, 57, 75
SstI GAGCTC 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 2 cut(s) 93, 213
TaqI TCGA 2 cut(s) 264, 302
TasI AATT 4 cut(s) 64, 98, 308, 371
TfiI GAWTC 2 cut(s) 195, 208
Tru1I TTAA 2 cut(s) 230, 365
Tru9I TTAA 2 cut(s) 230, 365
TseFI GTSAC 2 cut(s) 319, 331
Tsp45I GTSAC 2 cut(s) 319, 331
TspDTI ATGAA 2 cut(s) 42, 237
XapI RAATTY 2 cut(s) 98, 308
XcmI CCANNNNNNNNNTGG 1 cut(s) 183
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 3 cut(s) 48, 57, 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.