Rroxscaffold_3G00233560

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000490
Physical Location & Seq
Reverse (-)
19599864 .. 19601285
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00233560.1

Sequence Viewer

Length: 438 bp
ATGTGTTGTCATCGGTTCCCCAACACTTCGAAAGAAACTGTTCGTGACCATGACACCGTGTTTGCTAACCATGTTCCTACCACTGCTGCACTAGTTGGCTCATATGGAGGAAGGGACATCGCATTTGGACCCTACGGTCCAGATTGGAGGCGGCTGCGCAAGGTGTTTGTGAATAAGATGCTAAGCAAAACCAACCTTGATGATAGCTATGCTGCGAGAAGAGAAGAGGCGAACCGAGACCGCGACGGCAATGGTGGAATGGAGTTTCATTTGCCGAAATTACATCACTTGGATGCTGTGGTCAAGGAGACATTTCGATTGCACCCTGCACTGCCCCTTCTAGTGGCCCGCTGTCCAGCGAATCTGCCACCATTGGTGGCTATACCATACCGAAAGGCTACCATATCGTACATTATCCGTTTGAAGTTCTTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

145

Amino Acids

16.48

Weight (kDa)

9.58

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 135
Acc16I TGCGCA 1 cut(s) 158
AccII CGCG 1 cut(s) 243
AciI CCGC 3 cut(s) 151, 241, 349
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 1 cut(s) 424
AhlI ACTAGT 1 cut(s) 91
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
Alw26I GTCTC 2 cut(s) 231, 302
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 3 cut(s) 86, 154, 212
ArsI GACNNNNNNTTYG 4 cut(s) 44, 76, 107, 139
Asp700I GAANNNNTTC 1 cut(s) 39
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 3 cut(s) 128, 137, 346
AsuII TTCGAA 1 cut(s) 29
AvaII GGWCC 2 cut(s) 128, 137
BbvI GCAGC 3 cut(s) 73, 141, 199
BceAI ACGGC 1 cut(s) 262
BcoDI GTCTC 2 cut(s) 231, 302
BcuI ACTAGT 1 cut(s) 91
BfaI CTAG 2 cut(s) 92, 341
BisI GCNGC 4 cut(s) 87, 152, 155, 213
BlpI GCTNAGC 1 cut(s) 182
BlsI GCNGC 4 cut(s) 88, 153, 156, 214
Bme18I GGWCC 2 cut(s) 128, 137
BmgT120I GGNCC 3 cut(s) 128, 137, 346
BmiI GGNNCC 2 cut(s) 17, 130
BmsI GCATC 2 cut(s) 168, 283
Bpu1102I GCTNAGC 1 cut(s) 182
Bpu14I TTCGAA 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 231
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 256
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMI GCAATG 1 cut(s) 256
BseXI GCAGC 3 cut(s) 73, 141, 199
BsgI GTGCAG 2 cut(s) 72, 312
Bsh1236I CGCG 1 cut(s) 243
BshFI GGCC 1 cut(s) 347
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 2 cut(s) 231, 302
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 1 cut(s) 347
Bso31I GGTCTC 1 cut(s) 231
Bsp119I TTCGAA 1 cut(s) 29
Bsp1720I GCTNAGC 1 cut(s) 182
BspACI CCGC 3 cut(s) 151, 241, 349
BspANI GGCC 1 cut(s) 347
BspFNI CGCG 1 cut(s) 243
BspLI GGNNCC 2 cut(s) 17, 130
BspT104I TTCGAA 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 256
Bst4CI ACNGT 3 cut(s) 40, 58, 137
Bst6I CTCTTC 2 cut(s) 214, 219
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 1 cut(s) 182
BstF5I GGATG 1 cut(s) 298
BstFNI CGCG 1 cut(s) 243
BstHHI GCGC 1 cut(s) 159
BstMAI GTCTC 2 cut(s) 231, 302
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 3 cut(s) 73, 141, 199
BsuRI GGCC 1 cut(s) 347
BtgZI GCGATG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 298
BtsI GCAGTG 2 cut(s) 81, 329
BtsIMutI CAGTG 2 cut(s) 81, 329
Cac8I GCNNGC 1 cut(s) 349
CfoI GCGC 1 cut(s) 159
Cfr13I GGNCC 3 cut(s) 128, 137, 346
Csp6I GTAC 1 cut(s) 409
CviAII CATG 2 cut(s) 50, 71
CviJI RGCY 6 cut(s) 99, 154, 207, 347, 380, 398
CviKI_1 RGCY 6 cut(s) 99, 154, 207, 347, 380, 398
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 1 cut(s) 182
DrdI GACNNNNNNGTC 1 cut(s) 135
DseDI GACNNNNNNGTC 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 214, 219
EarI CTCTTC 2 cut(s) 214, 219
Eco31I GGTCTC 1 cut(s) 231
Eco47I GGWCC 2 cut(s) 128, 137
FaeI CATG 2 cut(s) 53, 74
FaiI YATR 8 cut(s) 51, 72, 103, 105, 210, 383, 388, 404
FaqI GGGAC 1 cut(s) 128
FatI CATG 2 cut(s) 49, 70
FauI CCCGC 1 cut(s) 356
FauNDI CATATG 1 cut(s) 103
Fnu4HI GCNGC 4 cut(s) 87, 152, 155, 213
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 4 cut(s) 87, 152, 155, 213
FspBI CTAG 2 cut(s) 92, 341
FspI TGCGCA 1 cut(s) 158
GlaI GCGC 1 cut(s) 158
GluI GCNGC 4 cut(s) 87, 152, 155, 213
HaeIII GGCC 1 cut(s) 347
HhaI GCGC 1 cut(s) 159
Hin1II CATG 2 cut(s) 53, 74
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HinfI GANTC 1 cut(s) 361
Hpy188III TCNNGA 2 cut(s) 44, 140
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 2 cut(s) 105, 347
HpyCH4III ACNGT 3 cut(s) 40, 58, 137
HpyCH4V TGCA 3 cut(s) 89, 322, 329
HpyF3I CTNAG 1 cut(s) 182
Hsp92II CATG 2 cut(s) 53, 74
HspAI GCGC 1 cut(s) 157
LpnPI CCDG 3 cut(s) 153, 339, 369
Lsp1109I GCAGC 3 cut(s) 73, 141, 199
LweI GCATC 2 cut(s) 168, 283
MaeI CTAG 2 cut(s) 92, 341
MaeIII GTNAC 1 cut(s) 44
MboII GAAGA 2 cut(s) 231, 236
MluCI AATT 1 cut(s) 278
MnlI CCTC 3 cut(s) 101, 141, 220
MroXI GAANNNNTTC 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 351
MvnI CGCG 1 cut(s) 243
NdeI CATATG 1 cut(s) 103
NlaIII CATG 2 cut(s) 53, 74
NlaIV GGNNCC 2 cut(s) 17, 130
NmuCI GTSAC 1 cut(s) 44
NsbI TGCGCA 1 cut(s) 158
NspV TTCGAA 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 361
PkrI GCNGC 4 cut(s) 88, 153, 156, 214
PspN4I GGNNCC 2 cut(s) 17, 130
PspPI GGNCC 3 cut(s) 128, 137, 346
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 291
SatI GCNGC 4 cut(s) 87, 152, 155, 213
Sau96I GGNCC 3 cut(s) 128, 137, 346
SetI ASST 3 cut(s) 165, 198, 209
SfaNI GCATC 2 cut(s) 168, 283
SfuI TTCGAA 1 cut(s) 29
SinI GGWCC 2 cut(s) 128, 137
SmiMI CAYNNNNRTG 1 cut(s) 291
SpeI ACTAGT 1 cut(s) 91
Sse9I AATT 1 cut(s) 278
SsiI CCGC 3 cut(s) 151, 241, 349
SspMI CTAG 2 cut(s) 92, 341
TaaI ACNGT 3 cut(s) 40, 58, 137
TaqI TCGA 2 cut(s) 29, 316
TasI AATT 1 cut(s) 278
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 1 cut(s) 361
TscAI CASTG 2 cut(s) 88, 336
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 3 cut(s) 86, 154, 212
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 257
TspGWI ACGGA 1 cut(s) 407
TspRI CASTG 2 cut(s) 88, 336
VpaK11BI GGWCC 2 cut(s) 128, 137
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 2 cut(s) 92, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.