Rorug07G0065600

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000490
Physical Location & Seq
Reverse (-)
4972090 .. 4973055
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0065600.1

Sequence Viewer

Length: 351 bp
ATGCTCATGAGAATCAATATCGATTGCAATGGTTGTTACAGAAAAGTAAAGAGAGCCCTTCTTGATATGCGAGAACTGGAGACACATTTGATAGAGAAAAAGGAGTGCAGGGTGAGCGTGTATGGTAGATTCATCCCACAAGACGTAGCAATCAAGATTAGGAAGAAGACTAATCGCCGAGTTGAGATACTCGACATACAAGAACTTCAGGTCAGCAGTAACACCAATGACAATGAGCAAGATCAACATCAAGAGCAGCAGAGACCTTTGATCAGTTCTAATTGGAATCTCATATCCAACAGCTGCAATAACCAATTCGAAACTCGTATACACAACGAGAAACATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

116

Amino Acids

13.91

Weight (kDa)

8.75

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 191
AluBI AGCT 1 cut(s) 303
AluI AGCT 1 cut(s) 303
Alw26I GTCTC 2 cut(s) 74, 256
ApeKI GCWGC 2 cut(s) 256, 303
AsuHPI GGTGA 1 cut(s) 124
AsuII TTCGAA 1 cut(s) 318
BanII GRGCYC 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 173
BbvI GCAGC 2 cut(s) 268, 290
BclI TGATCA 1 cut(s) 270
BcoDI GTCTC 2 cut(s) 74, 256
BisI GCNGC 2 cut(s) 257, 304
BlsI GCNGC 2 cut(s) 258, 305
BpiI GAAGAC 1 cut(s) 173
BpmI CTGGAG 1 cut(s) 98
Bpu14I TTCGAA 1 cut(s) 318
Bsa29I ATCGAT 1 cut(s) 21
BsaBI GATNNNNATC 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 34
Bse8I GATNNNNATC 1 cut(s) 246
BseCI ATCGAT 1 cut(s) 21
BseGI GGATG 1 cut(s) 132
BseJI GATNNNNATC 1 cut(s) 246
BseMI GCAATG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 81
BseXI GCAGC 2 cut(s) 268, 290
BsgI GTGCAG 1 cut(s) 127
BshVI ATCGAT 1 cut(s) 21
BsmAI GTCTC 2 cut(s) 74, 256
Bso31I GGTCTC 1 cut(s) 256
Bsp119I TTCGAA 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 2 cut(s) 241, 270
BspDI ATCGAT 1 cut(s) 21
BspHI TCATGA 1 cut(s) 6
BspT104I TTCGAA 1 cut(s) 318
BspTNI GGTCTC 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 34
BsrI ACTGG 1 cut(s) 81
BssMI GATC 2 cut(s) 241, 270
BssNAI GTATAC 1 cut(s) 329
Bst1107I GTATAC 1 cut(s) 329
BstBI TTCGAA 1 cut(s) 318
BstF5I GGATG 1 cut(s) 132
BstKTI GATC 2 cut(s) 244, 273
BstMAI GTCTC 2 cut(s) 74, 256
BstMBI GATC 2 cut(s) 241, 270
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 268, 290
BstV2I GAAGAC 1 cut(s) 173
BstZ17I GTATAC 1 cut(s) 329
Bsu15I ATCGAT 1 cut(s) 21
BsuTUI ATCGAT 1 cut(s) 21
BtsCI GGATG 1 cut(s) 132
CciI TCATGA 1 cut(s) 6
ClaI ATCGAT 1 cut(s) 21
CviAII CATG 1 cut(s) 7
CviJI RGCY 2 cut(s) 56, 303
CviKI_1 RGCY 2 cut(s) 56, 303
DpnI GATC 2 cut(s) 243, 272
DpnII GATC 2 cut(s) 241, 270
Eco24I GRGCYC 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 58
FaeI CATG 1 cut(s) 10
FaiI YATR 6 cut(s) 8, 68, 123, 197, 293, 329
FatI CATG 1 cut(s) 6
FbaI TGATCA 1 cut(s) 270
FblI GTMKAC 1 cut(s) 328
Fnu4HI GCNGC 2 cut(s) 257, 304
FokI GGATG 1 cut(s) 119
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 2 cut(s) 257, 304
GluI GCNGC 2 cut(s) 257, 304
GsuI CTGGAG 1 cut(s) 98
Hin1II CATG 1 cut(s) 10
HinfI GANTC 3 cut(s) 12, 129, 286
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 329
Hpy188III TCNNGA 4 cut(s) 7, 62, 154, 251
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 3 cut(s) 27, 108, 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 1 cut(s) 10
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 2 cut(s) 241, 270
LpnPI CCDG 3 cut(s) 62, 94, 194
Lsp1109I GCAGC 2 cut(s) 268, 290
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 35, 218
MalI GATC 2 cut(s) 243, 272
MboI GATC 2 cut(s) 241, 270
MboII GAAGA 2 cut(s) 175, 178
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 2 cut(s) 280, 314
MmeI TCCRAC 1 cut(s) 321
MseI TTAA 1 cut(s) 349
MspA1I CMGCKG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 114
NdeII GATC 2 cut(s) 241, 270
NlaIII CATG 1 cut(s) 10
NmeAIII GCCGAG 1 cut(s) 203
NspV TTCGAA 1 cut(s) 318
PagI TCATGA 1 cut(s) 6
PfeI GAWTC 3 cut(s) 12, 129, 286
PkrI GCNGC 2 cut(s) 258, 305
PvuII CAGCTG 1 cut(s) 303
SaqAI TTAA 1 cut(s) 349
SatI GCNGC 2 cut(s) 257, 304
Sau3AI GATC 2 cut(s) 241, 270
SduI GDGCHC 1 cut(s) 58
SetI ASST 4 cut(s) 147, 213, 268, 305
SfuI TTCGAA 1 cut(s) 318
Sse9I AATT 2 cut(s) 280, 314
TaiI ACGT 1 cut(s) 147
TaqI TCGA 3 cut(s) 21, 192, 318
TasI AATT 2 cut(s) 280, 314
TfiI GAWTC 3 cut(s) 12, 129, 286
Tru1I TTAA 1 cut(s) 349
Tru9I TTAA 1 cut(s) 349
TseI GCWGC 2 cut(s) 256, 303
TspDTI ATGAA 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.