Rmu_sc0016902.1_g000001

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016902.1
OG0000490
Physical Location & Seq
Forward (+)
2556 .. 3515
960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016902.1_g000001.1.cds

Sequence Viewer

Length: 960 bp
atggggtcatcgctgtgggttactagcaatcatgacaatggggaaaaccttccagtaatttccacactcttgttcatggtgtttattctgctctggttcttgtggatttggaagaaaccgaataggaaccctacagctccattgccaccaggccctcgtggtctgccgctagtcggatatcttccatttcttggtgcaaacctccacctagaattcacagacatggcaagggtttatggtccaatttacaaacttcaacttggtaccaagttgtgcattgtggtgagctcacctgagcttgtgaaacaagtggttcgtgaccatgacataacattttccaaccgtgaccttacaattgctggtctagtcgcgtcatatggagcatcagacattgcatttggatcgtatggttcagattggaggaagctgcgcaaggtgtttgtgggtcagatgctaagcaaaatcaaccttgatgatggctatgctctgagaaaagaggaggtgcacaagtcgatcagtcgtatttatcatgacaaaattggaacccaaactgatttgggcgagtttgcattttccacagtaatcaacgcaaatttgcttatgctatggggtgcaactctacaagggactgattttggtgaagattataggaaattggtggcagaaattgtatatctatttgcaaaaccaaacatttcggactattttcctgtgctagcaaggtttgacatacaaggaattgagaggcaagcaaagaaagttcaatccgcgattgacgagattctaagttgtgccatagaaaaacggatgaagatgctggcctcagccaaaaatgggggagtacaacaaaaacatgaaacgaaggactttctgcagttcctcttggagaacaataataaccatgaagatggttcaacatcgtttacagtgcaacaactgaagggcatgctcggggtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

319

Amino Acids

35.82

Weight (kDa)

8.36

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 431
Acc65I GGTACC 1 cut(s) 263
AccB1I GGYRCC 1 cut(s) 263
AccB7I CCANNNNNTGG 1 cut(s) 191
AccII CGCG 2 cut(s) 371, 770
AciI CCGC 2 cut(s) 167, 768
AclWI GGATC 1 cut(s) 409
AcsI RAATTY 2 cut(s) 212, 592
AcuI CTGAAG 1 cut(s) 959
AfaI GTAC 2 cut(s) 265, 843
AfiI CCNNNNNNNGG 3 cut(s) 173, 191, 834
AgsI TTSAA 3 cut(s) 257, 764, 915
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 4 cut(s) 137, 288, 298, 427
AluI AGCT 4 cut(s) 137, 288, 298, 427
Alw21I GWGCWC 2 cut(s) 290, 507
Alw44I GTGCAC 1 cut(s) 503
AlwI GGATC 1 cut(s) 409
Ama87I CYCGRG 1 cut(s) 950
AoxI GGCC 2 cut(s) 151, 819
ApaLI GTGCAC 1 cut(s) 503
ApeKI GCWGC 1 cut(s) 427
ApoI RAATTY 2 cut(s) 212, 592
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
Asp700I GAANNNNTTC 1 cut(s) 48
Asp718I GGTACC 1 cut(s) 263
AspLEI GCGC 1 cut(s) 432
AspS9I GGNCC 2 cut(s) 152, 239
AsuHPI GGTGA 3 cut(s) 282, 295, 650
AsuNHI GCTAGC 1 cut(s) 715
AvaI CYCGRG 1 cut(s) 950
AvaII GGWCC 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 507
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 290
BauI CACGAG 1 cut(s) 156
Bbv12I GWGCWC 2 cut(s) 290, 507
BbvCI CCTCAGC 1 cut(s) 823
BbvI GCAGC 1 cut(s) 414
BccI CCATC 2 cut(s) 470, 902
BcgI CGANNNNNNTGC 2 cut(s) 384, 418
BciT130I CCWGG 1 cut(s) 150
BfaI CTAG 5 cut(s) 24, 170, 209, 365, 716
BfmI CTRYAG 2 cut(s) 132, 872
BisI GCNGC 2 cut(s) 167, 428
BlpI GCTNAGC 1 cut(s) 455
BlsI GCNGC 2 cut(s) 168, 429
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 239
BmeT110I CYCGRG 1 cut(s) 950
BmgT120I GGNCC 2 cut(s) 152, 239
BmiI GGNNCC 3 cut(s) 128, 265, 544
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 3 cut(s) 392, 441, 804
BmtI GCTAGC 1 cut(s) 719
Bpu10I CCTNAGC 2 cut(s) 294, 823
Bpu1102I GCTNAGC 1 cut(s) 455
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 191, 834
Bse1I ACTGG 1 cut(s) 53
Bse3DI GCAATG 2 cut(s) 140, 390
BseBI CCWGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 813
BseLI CCNNNNNNNGG 3 cut(s) 173, 191, 834
BseMI GCAATG 2 cut(s) 140, 390
BseMII CTCAG 3 cut(s) 285, 479, 837
BseNI ACTGG 1 cut(s) 53
BseRI GAGGAG 1 cut(s) 512
BseSI GKGCMC 1 cut(s) 507
BseXI GCAGC 1 cut(s) 414
Bsh1236I CGCG 2 cut(s) 371, 770
BshFI GGCC 2 cut(s) 153, 821
BshNI GGYRCC 1 cut(s) 263
BsiHKAI GWGCWC 2 cut(s) 290, 507
BsiHKCI CYCGRG 1 cut(s) 950
BslFI GGGAC 1 cut(s) 640
BslI CCNNNNNNNGG 3 cut(s) 173, 191, 834
BsmFI GGGAC 1 cut(s) 640
BsnI GGCC 2 cut(s) 153, 821
BsoBI CYCGRG 1 cut(s) 950
Bsp1286I GDGCHC 2 cut(s) 290, 507
Bsp143I GATC 2 cut(s) 401, 513
Bsp1720I GCTNAGC 1 cut(s) 455
BspACI CCGC 2 cut(s) 167, 768
BspANI GGCC 2 cut(s) 153, 821
BspCNI CTCAG 3 cut(s) 286, 480, 836
BspFNI CGCG 2 cut(s) 371, 770
BspHI TCATGA 2 cut(s) 31, 529
BspLI GGNNCC 3 cut(s) 128, 265, 544
BspMAI CTGCAG 1 cut(s) 876
BspOI GCTAGC 1 cut(s) 719
BspPI GGATC 1 cut(s) 409
BspT107I GGYRCC 1 cut(s) 263
BsrDI GCAATG 2 cut(s) 140, 390
BsrI ACTGG 1 cut(s) 53
BssMI GATC 2 cut(s) 401, 513
BssSI CACGAG 1 cut(s) 156
Bst2BI CACGAG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 3 cut(s) 344, 580, 928
BstC8I GCNNGC 4 cut(s) 717, 750, 819, 947
BstDEI CTNAG 5 cut(s) 294, 455, 488, 785, 823
BstF5I GGATG 1 cut(s) 813
BstFNI CGCG 2 cut(s) 371, 770
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 2 cut(s) 404, 516
BstMBI GATC 2 cut(s) 401, 513
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 1 cut(s) 949
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 2 cut(s) 132, 872
BstSLI GKGCMC 1 cut(s) 507
BstUI CGCG 2 cut(s) 371, 770
BstV1I GCAGC 1 cut(s) 414
BstXI CCANNNNNNTGG 1 cut(s) 908
BsuRI GGCC 2 cut(s) 153, 821
BtsCI GGATG 1 cut(s) 813
BtsIMutI CAGTG 1 cut(s) 933
Cac8I GCNNGC 4 cut(s) 717, 750, 819, 947
CciI TCATGA 2 cut(s) 31, 529
CfoI GCGC 1 cut(s) 432
Cfr13I GGNCC 2 cut(s) 152, 239
CseI GACGC 1 cut(s) 360
Csp6I GTAC 2 cut(s) 264, 842
CviAII CATG 8 cut(s) 32, 76, 223, 323, 530, 854, 902, 946
CviJI RGCY 8 cut(s) 137, 153, 288, 298, 427, 480, 821, 827
CviKI_1 RGCY 8 cut(s) 137, 153, 288, 298, 427, 480, 821, 827
CviQI GTAC 2 cut(s) 264, 842
DdeI CTNAG 5 cut(s) 294, 455, 488, 785, 823
DpnI GATC 2 cut(s) 403, 515
DpnII GATC 2 cut(s) 401, 513
Ecl136II GAGCTC 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 290
Eco32I GATATC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 959
Eco88I CYCGRG 1 cut(s) 950
EcoICRI GAGCTC 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 148
EcoRV GATATC 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 290
FaeI CATG 8 cut(s) 35, 79, 226, 326, 533, 857, 905, 949
FaqI GGGAC 1 cut(s) 640
FatI CATG 8 cut(s) 31, 75, 222, 322, 529, 853, 901, 945
FauNDI CATATG 1 cut(s) 376
Fnu4HI GCNGC 2 cut(s) 167, 428
FokI GGATG 1 cut(s) 820
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 2 cut(s) 167, 428
FspBI CTAG 5 cut(s) 24, 170, 209, 365, 716
FspI TGCGCA 1 cut(s) 431
GlaI GCGC 1 cut(s) 431
GluI GCNGC 2 cut(s) 167, 428
HaeIII GGCC 2 cut(s) 153, 821
HgaI GACGC 1 cut(s) 360
HhaI GCGC 1 cut(s) 432
Hin1II CATG 8 cut(s) 35, 79, 226, 326, 533, 857, 905, 949
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HinfI GANTC 1 cut(s) 781
HphI GGTGA 3 cut(s) 282, 295, 650
Hpy166II GTNNAC 2 cut(s) 505, 924
Hpy188I TCNGA 6 cut(s) 176, 388, 415, 450, 489, 700
Hpy188III TCNNGA 3 cut(s) 32, 317, 530
Hpy8I GTNNAC 2 cut(s) 505, 924
HpyAV CCTTC 3 cut(s) 59, 856, 934
HpyCH4III ACNGT 3 cut(s) 344, 580, 928
HpyCH4V TGCA 9 cut(s) 197, 276, 395, 505, 569, 614, 683, 874, 931
HpyF3I CTNAG 5 cut(s) 294, 455, 488, 785, 823
Hsp92II CATG 8 cut(s) 35, 79, 226, 326, 533, 857, 905, 949
HspAI GCGC 1 cut(s) 430
KpnI GGTACC 1 cut(s) 267
Kzo9I GATC 2 cut(s) 401, 513
LmnI GCTCC 2 cut(s) 142, 380
LpnPI CCDG 8 cut(s) 66, 79, 135, 162, 306, 345, 723, 803
Lsp1109I GCAGC 1 cut(s) 414
LweI GCATC 3 cut(s) 392, 441, 804
MaeI CTAG 5 cut(s) 24, 170, 209, 365, 716
MaeIII GTNAC 3 cut(s) 19, 317, 344
MalI GATC 2 cut(s) 403, 515
MboI GATC 2 cut(s) 401, 513
MboII GAAGA 5 cut(s) 124, 173, 653, 823, 917
MfeI CAATTG 1 cut(s) 354
MhlI GDGCHC 2 cut(s) 290, 507
MluCI AATT 9 cut(s) 57, 212, 243, 354, 537, 592, 653, 666, 738
MmeI TCCRAC 2 cut(s) 154, 363
MnlI CCTC 8 cut(s) 165, 212, 414, 490, 493, 738, 832, 890
MroXI GAANNNNTTC 1 cut(s) 48
MslI CAYNNNNRTG 5 cut(s) 13, 36, 221, 281, 906
MspR9I CCNGG 1 cut(s) 150
MunI CAATTG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 150
MvnI CGCG 2 cut(s) 371, 770
NdeI CATATG 1 cut(s) 376
NdeII GATC 2 cut(s) 401, 513
NheI GCTAGC 1 cut(s) 715
NlaIII CATG 8 cut(s) 35, 79, 226, 326, 533, 857, 905, 949
NlaIV GGNNCC 3 cut(s) 128, 265, 544
NmuCI GTSAC 2 cut(s) 317, 344
NsbI TGCGCA 1 cut(s) 431
NspI RCATGY 1 cut(s) 949
PaeI GCATGC 1 cut(s) 949
PagI TCATGA 2 cut(s) 31, 529
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 1 cut(s) 781
PflMI CCANNNNNTGG 1 cut(s) 191
PkrI GCNGC 2 cut(s) 168, 429
Psp124BI GAGCTC 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 3 cut(s) 128, 265, 544
PspPI GGNCC 2 cut(s) 152, 239
PstI CTGCAG 1 cut(s) 876
RsaI GTAC 2 cut(s) 265, 843
RsaNI GTAC 2 cut(s) 264, 842
RseI CAYNNNNRTG 5 cut(s) 13, 36, 221, 281, 906
SacI GAGCTC 1 cut(s) 290
SatI GCNGC 2 cut(s) 167, 428
Sau3AI GATC 2 cut(s) 401, 513
Sau96I GGNCC 2 cut(s) 152, 239
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 2 cut(s) 290, 507
SfaNI GCATC 3 cut(s) 392, 441, 804
SfcI CTRYAG 2 cut(s) 132, 872
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 5 cut(s) 13, 36, 221, 281, 906
SphI GCATGC 1 cut(s) 949
Sse9I AATT 9 cut(s) 57, 212, 243, 354, 537, 592, 653, 666, 738
SsiI CCGC 2 cut(s) 167, 768
SspMI CTAG 5 cut(s) 24, 170, 209, 365, 716
SstI GAGCTC 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 3 cut(s) 344, 580, 928
TaqI TCGA 1 cut(s) 512
TasI AATT 9 cut(s) 57, 212, 243, 354, 537, 592, 653, 666, 738
TatI WGTACW 1 cut(s) 841
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 1 cut(s) 781
TscAI CASTG 1 cut(s) 933
TseFI GTSAC 2 cut(s) 317, 344
TseI GCWGC 1 cut(s) 427
Tsp45I GTSAC 2 cut(s) 317, 344
TspDTI ATGAA 4 cut(s) 64, 824, 870, 918
TspGWI ACGGA 1 cut(s) 820
TspRI CASTG 1 cut(s) 933
Van91I CCANNNNNTGG 1 cut(s) 191
VneI GTGCAC 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 2 cut(s) 212, 592
XceI RCATGY 1 cut(s) 949
XmnI GAANNNNTTC 1 cut(s) 48
XspI CTAG 5 cut(s) 24, 170, 209, 365, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.