Rmu_sc0001030.1_g000006

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001030.1
OG0000490
Physical Location & Seq
Reverse (-)
36113 .. 36892
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001030.1_g000006.1.cds

Sequence Viewer

Length: 780 bp
atgtggtcatcatggggggatgctagcaatgataaagatgaaaatctcagagcaatatttcttgcccttctagctatgatgttagctattttctggttcctgtggtctaggaaaaagtgctcaaagaacccaatacctccattgccaccaggccctataggtttgcctctacttggataccttcccttcttaggcaccaaccttcaccgtgaattcactgagttggcgagggtttatggccctatttacaaactccgcctcggaagcaaattatatgttgcgatcagttccccaacacttctaaaagaaatggttcgtgaccatgacactgtgtttgctaaccatgttcctaccacagctgcactagttggctcatatggagcaagggacatcgcatttgcaccctacggtccatattggaggcggctgcgcaaggtgtttgtgagtaagatgctaagcaaaaccaaccttgatgatagctatgctttgagaagagaagagtttcacaagtcaattggtcatatttatgacagaattggcactccaatagatttgggaaagttggcattttcgactgcaaccaacaacgtcatgcgcctgctatggggtggaacgatattaaaaggagaaaaggcagctgaggctggagctgagtttcgaaaaacagtgactggaacgatggagctacttgggaaaccaaatatttcaactttttccctgcactttccatctttgatgcacaatgaatcgagagggaagcaaaaaagctcatttcggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

259

Amino Acids

29.15

Weight (kDa)

9.9

Isoelectric Point (pI)

34.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 431
AccB1I GGYRCC 1 cut(s) 194
AciI CCGC 2 cut(s) 256, 424
AcsI RAATTY 1 cut(s) 212
AfiI CCNNNNNNNGG 3 cut(s) 173, 191, 604
AgsI TTSAA 1 cut(s) 708
AhlI ACTAGT 1 cut(s) 364
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 8 cut(s) 74, 86, 359, 480, 638, 650, 685, 768
AluI AGCT 8 cut(s) 74, 86, 359, 480, 638, 650, 685, 768
Alw21I GWGCWC 1 cut(s) 122
AlwNI CAGNNNCTG 1 cut(s) 671
AoxI GGCC 2 cut(s) 151, 238
ApeKI GCWGC 3 cut(s) 359, 427, 635
ApoI RAATTY 1 cut(s) 212
ArsI GACNNNNNNTTYG 4 cut(s) 317, 349, 380, 412
Asp700I GAANNNNTTC 2 cut(s) 312, 501
AspLEI GCGC 2 cut(s) 432, 597
AspS9I GGNCC 3 cut(s) 152, 239, 410
AsuHPI GGTGA 1 cut(s) 197
AsuII TTCGAA 1 cut(s) 658
AsuNHI GCTAGC 1 cut(s) 23
AvaII GGWCC 1 cut(s) 410
BanI GGYRCC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 122
BbvCI CCTCAGC 1 cut(s) 639
BbvI GCAGC 3 cut(s) 346, 414, 647
BccI CCATC 2 cut(s) 673, 736
BciT130I CCWGG 1 cut(s) 150
BciVI GTATCC 1 cut(s) 170
BcuI ACTAGT 1 cut(s) 364
BfaI CTAG 4 cut(s) 24, 71, 108, 365
BfmI CTRYAG 1 cut(s) 156
BfuI GTATCC 1 cut(s) 170
BisI GCNGC 4 cut(s) 360, 425, 428, 636
BlpI GCTNAGC 1 cut(s) 455
BlsI GCNGC 4 cut(s) 361, 426, 429, 637
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 3 cut(s) 152, 239, 410
BmiI GGNNCC 2 cut(s) 98, 196
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 3 cut(s) 10, 441, 726
BmtI GCTAGC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 666
Bpu10I CCTNAGC 1 cut(s) 639
Bpu1102I GCTNAGC 1 cut(s) 455
Bpu14I TTCGAA 1 cut(s) 658
BsaBI GATNNNNATC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 191, 604
Bse1I ACTGG 1 cut(s) 676
Bse3DI GCAATG 2 cut(s) 34, 140
Bse8I GATNNNNATC 1 cut(s) 42
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 25
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 3 cut(s) 173, 191, 604
BseMI GCAATG 2 cut(s) 34, 140
BseMII CTCAG 4 cut(s) 61, 210, 630, 642
BseNI ACTGG 1 cut(s) 676
BseXI GCAGC 3 cut(s) 346, 414, 647
BsgI GTGCAG 2 cut(s) 345, 704
BshFI GGCC 2 cut(s) 153, 240
BshNI GGYRCC 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 122
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 3 cut(s) 173, 191, 604
BsmFI GGGAC 1 cut(s) 401
BsnI GGCC 2 cut(s) 153, 240
Bsp119I TTCGAA 1 cut(s) 658
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 1 cut(s) 282
Bsp1720I GCTNAGC 1 cut(s) 455
BspACI CCGC 2 cut(s) 256, 424
BspANI GGCC 2 cut(s) 153, 240
BspCNI CTCAG 4 cut(s) 60, 211, 631, 643
BspLI GGNNCC 2 cut(s) 98, 196
BspOI GCTAGC 1 cut(s) 27
BspT104I TTCGAA 1 cut(s) 658
BspT107I GGYRCC 1 cut(s) 194
BsrDI GCAATG 2 cut(s) 34, 140
BsrI ACTGG 1 cut(s) 676
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 4 cut(s) 209, 331, 410, 667
Bst6I CTCTTC 2 cut(s) 487, 492
BstBI TTCGAA 1 cut(s) 658
BstC8I GCNNGC 2 cut(s) 25, 599
BstDEI CTNAG 6 cut(s) 47, 190, 219, 455, 639, 651
BstF5I GGATG 1 cut(s) 25
BstHHI GCGC 2 cut(s) 432, 597
BstKTI GATC 1 cut(s) 285
BstMBI GATC 1 cut(s) 282
BstMWI GCNNNNNNNGC 3 cut(s) 71, 264, 641
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 3 cut(s) 346, 414, 647
BsuI GTATCC 1 cut(s) 170
BsuRI GGCC 2 cut(s) 153, 240
BtgZI GCGATG 1 cut(s) 376
BtsCI GGATG 1 cut(s) 25
BtsIMutI CAGTG 3 cut(s) 216, 327, 672
Cac8I GCNNGC 2 cut(s) 25, 599
CaiI CAGNNNCTG 1 cut(s) 671
CfoI GCGC 2 cut(s) 432, 597
Cfr13I GGNCC 3 cut(s) 152, 239, 410
CviAII CATG 4 cut(s) 12, 323, 344, 592
DdeI CTNAG 6 cut(s) 47, 190, 219, 455, 639, 651
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
Eam1104I CTCTTC 2 cut(s) 487, 492
EarI CTCTTC 2 cut(s) 487, 492
EciI GGCGGA 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 410
EcoO109I RGGNCCY 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 148
FaeI CATG 4 cut(s) 15, 326, 347, 595
FaqI GGGAC 1 cut(s) 401
FatI CATG 4 cut(s) 11, 322, 343, 591
FauNDI CATATG 1 cut(s) 376
Fnu4HI GCNGC 4 cut(s) 360, 425, 428, 636
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 4 cut(s) 360, 425, 428, 636
FspBI CTAG 4 cut(s) 24, 71, 108, 365
FspI TGCGCA 1 cut(s) 431
GlaI GCGC 2 cut(s) 431, 596
GluI GCNGC 4 cut(s) 360, 425, 428, 636
GsuI CTGGAG 1 cut(s) 666
HaeIII GGCC 2 cut(s) 153, 240
HhaI GCGC 2 cut(s) 432, 597
Hin1II CATG 4 cut(s) 15, 326, 347, 595
Hin6I GCGC 2 cut(s) 430, 595
HinP1I GCGC 2 cut(s) 430, 595
HinfI GANTC 1 cut(s) 746
HphI GGTGA 1 cut(s) 197
Hpy188I TCNGA 2 cut(s) 50, 263
Hpy188III TCNNGA 2 cut(s) 317, 750
HpyAV CCTTC 4 cut(s) 77, 191, 196, 212
HpyCH4III ACNGT 4 cut(s) 209, 331, 410, 667
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 5 cut(s) 362, 401, 578, 721, 739
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 264, 641
HpyF3I CTNAG 6 cut(s) 47, 190, 219, 455, 639, 651
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 4 cut(s) 15, 326, 347, 595
HspAI GCGC 2 cut(s) 430, 595
Kzo9I GATC 1 cut(s) 282
LmnI GCTCC 3 cut(s) 380, 647, 682
LpnPI CCDG 8 cut(s) 79, 113, 135, 162, 611, 630, 657, 731
Lsp1109I GCAGC 3 cut(s) 346, 414, 647
LweI GCATC 3 cut(s) 10, 441, 726
MaeI CTAG 4 cut(s) 24, 71, 108, 365
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 2 cut(s) 317, 667
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 2 cut(s) 504, 509
MfeI CAATTG 1 cut(s) 513
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 4 cut(s) 212, 269, 513, 534
MnlI CCTC 7 cut(s) 147, 177, 222, 269, 414, 634, 746
MroXI GAANNNNTTC 2 cut(s) 312, 501
MseI TTAA 1 cut(s) 620
MslI CAYNNNNRTG 2 cut(s) 525, 775
MspA1I CMGCKG 2 cut(s) 359, 638
MspR9I CCNGG 1 cut(s) 150
MunI CAATTG 1 cut(s) 513
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 3 cut(s) 71, 264, 641
NdeI CATATG 1 cut(s) 376
NdeII GATC 1 cut(s) 282
NheI GCTAGC 1 cut(s) 23
NlaIII CATG 4 cut(s) 15, 326, 347, 595
NlaIV GGNNCC 2 cut(s) 98, 196
NmuCI GTSAC 2 cut(s) 317, 667
NsbI TGCGCA 1 cut(s) 431
NspV TTCGAA 1 cut(s) 658
PdmI GAANNNNTTC 2 cut(s) 312, 501
PfeI GAWTC 1 cut(s) 746
PkrI GCNGC 4 cut(s) 361, 426, 429, 637
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 2 cut(s) 98, 196
PspPI GGNCC 3 cut(s) 152, 239, 410
PstNI CAGNNNCTG 1 cut(s) 671
PvuII CAGCTG 2 cut(s) 359, 638
RseI CAYNNNNRTG 2 cut(s) 525, 775
SaqAI TTAA 1 cut(s) 620
SatI GCNGC 4 cut(s) 360, 425, 428, 636
Sau3AI GATC 1 cut(s) 282
Sau96I GGNCC 3 cut(s) 152, 239, 410
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 1 cut(s) 122
SfaNI GCATC 3 cut(s) 10, 441, 726
SfcI CTRYAG 1 cut(s) 156
SfuI TTCGAA 1 cut(s) 658
SinI GGWCC 1 cut(s) 410
SmiMI CAYNNNNRTG 2 cut(s) 525, 775
SpeI ACTAGT 1 cut(s) 364
Sse9I AATT 4 cut(s) 212, 269, 513, 534
SsiI CCGC 2 cut(s) 256, 424
SspI AATATT 2 cut(s) 57, 703
SspMI CTAG 4 cut(s) 24, 71, 108, 365
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 4 cut(s) 209, 331, 410, 667
TaiI ACGT 1 cut(s) 591
TaqI TCGA 3 cut(s) 572, 658, 749
TasI AATT 4 cut(s) 212, 269, 513, 534
TauI GCSGC 1 cut(s) 427
TfiI GAWTC 1 cut(s) 746
Tru1I TTAA 1 cut(s) 620
Tru9I TTAA 1 cut(s) 620
TscAI CASTG 3 cut(s) 223, 334, 672
TseFI GTSAC 2 cut(s) 317, 667
TseI GCWGC 3 cut(s) 359, 427, 635
Tsp45I GTSAC 2 cut(s) 317, 667
TspDTI ATGAA 2 cut(s) 54, 759
TspRI CASTG 3 cut(s) 223, 334, 672
VpaK11BI GGWCC 1 cut(s) 410
XapI RAATTY 1 cut(s) 212
XmnI GAANNNNTTC 2 cut(s) 312, 501
XspI CTAG 4 cut(s) 24, 71, 108, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.