Rh7BG194900

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000490
Physical Location & Seq
Reverse (-)
15879848 .. 15880807
960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG194900.1

Sequence Viewer

Length: 960 bp
ATGGGGTCATCACTGTGGGTTACTAGCAATCATGACAAAGGGGAAAACCTTCCAGCAATTTCCACACTCTTGTTCATGGTGTTTACTCTGCTCTGGTTCTTATGGATTTGGAAGAAACCGAATAGGAACCCTACACCTCCATTGCCACCAGGCCCTCGTGGTCTGCCGCTACTCGGATATCTTCCATTTCTTGGTACAAACCTCCACCTAGAATTCACAGACATGGCAAGGGTTTATGGCCCAATTTACAAACTCCAACTTGGTACCAAGTTGTGCACTGTGGTGAGCTCACCTAAGCTTGTGAAACAAGTGGTTCGTGACCATGACACTACATTTTCCAACCGTGACCCTACAATTGCTGCTCTAGTGGGGTCATATGGAGCATCCGACATTGCATTTGGATCGTATGGTTCAGATTGGAGGAAGCTGCGCAAGGTGTTTGTGAGTCAGATGCTAAGCAAAATCAATCTTGATGATGGCTATGCTCTGAGAAAAGAGGAGGTGCACAAGTCGATCAGTCATATTTATCATGACAAAATTGGAACCCAAACTGATTTGGGCGAGTTTGCATTCTCCACAGTAATCAACGCAACTTTGCGTATGCTATGGGGTGCAACTCTACAAGGGACTGATTTTAGTGAAGACTATAGGAAATTGGTGGCAGAAATTGTAGATCTATTTGCGAAACCAAACATTTCGGACTATTTTCCTGTGCTTGCAAGGTTTGACATACAAGGAATTGAGAGGCAAGCAAAGAAAGTTCAATCCGCAATTGACAAGATTCTAAGTTGTGCCATAGAAGAACGGATGAAGAAGCTGGCCTCAGCCAAAAATGGGGGAGTACAACAAAAACATGAGAGGAAGGACTTTCTGCAGTTCCTCTTGGAGAACAATCATAATCATGAAGATGGTTCAACATCCTTTACAGGGCAACAACTGAAGGCCTTGCTCATGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

319

Amino Acids

35.95

Weight (kDa)

9.12

Isoelectric Point (pI)

33.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 49 - 318 2.7e-34 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 431
Acc65I GGTACC 1 cut(s) 263
AccB1I GGYRCC 1 cut(s) 263
AccB7I CCANNNNNTGG 1 cut(s) 191
AciI CCGC 2 cut(s) 167, 768
AclWI GGATC 1 cut(s) 409
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 959
AfaI GTAC 3 cut(s) 196, 265, 843
AfiI CCNNNNNNNGG 4 cut(s) 173, 191, 834, 927
AgsI TTSAA 2 cut(s) 764, 915
AjnI CCWGG 1 cut(s) 148
AleI CACNNNNGTG 1 cut(s) 281
AluBI AGCT 4 cut(s) 288, 298, 427, 817
AluI AGCT 4 cut(s) 288, 298, 427, 817
Alw21I GWGCWC 3 cut(s) 278, 290, 507
Alw44I GTGCAC 2 cut(s) 274, 503
AlwI GGATC 1 cut(s) 409
AoxI GGCC 4 cut(s) 151, 238, 819, 942
ApaLI GTGCAC 2 cut(s) 274, 503
ApeKI GCWGC 2 cut(s) 359, 427
ApoI RAATTY 1 cut(s) 212
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
Asp700I GAANNNNTTC 1 cut(s) 48
Asp718I GGTACC 1 cut(s) 263
AspLEI GCGC 1 cut(s) 432
AspS9I GGNCC 2 cut(s) 152, 239
AsuHPI GGTGA 2 cut(s) 282, 295
BaeGI GKGCMC 2 cut(s) 278, 507
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 290
BauI CACGAG 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 648
Bbv12I GWGCWC 3 cut(s) 278, 290, 507
BbvCI CCTCAGC 1 cut(s) 823
BbvI GCAGC 2 cut(s) 346, 414
BccI CCATC 2 cut(s) 470, 902
BcgI CGANNNNNNTGC 2 cut(s) 384, 418
BciT130I CCWGG 1 cut(s) 150
BfaI CTAG 3 cut(s) 24, 209, 365
BfmI CTRYAG 2 cut(s) 646, 872
BglII AGATCT 1 cut(s) 673
BisI GCNGC 3 cut(s) 167, 360, 428
BlpI GCTNAGC 1 cut(s) 455
BlsI GCNGC 3 cut(s) 168, 361, 429
Bme1390I CCNGG 1 cut(s) 150
BmgT120I GGNCC 2 cut(s) 152, 239
BmiI GGNNCC 3 cut(s) 128, 265, 544
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 2 cut(s) 392, 441
BpiI GAAGAC 1 cut(s) 648
Bpu10I CCTNAGC 2 cut(s) 294, 823
Bpu1102I GCTNAGC 1 cut(s) 455
Bsc4I CCNNNNNNNGG 4 cut(s) 173, 191, 834, 927
Bse3DI GCAATG 2 cut(s) 140, 390
BseBI CCWGG 1 cut(s) 150
BseGI GGATG 3 cut(s) 383, 813, 917
BseLI CCNNNNNNNGG 4 cut(s) 173, 191, 834, 927
BseMI GCAATG 2 cut(s) 140, 390
BseMII CTCAG 2 cut(s) 479, 837
BseRI GAGGAG 1 cut(s) 512
BseSI GKGCMC 2 cut(s) 278, 507
BseXI GCAGC 2 cut(s) 346, 414
BshFI GGCC 4 cut(s) 153, 240, 821, 944
BshNI GGYRCC 1 cut(s) 263
BsiHKAI GWGCWC 3 cut(s) 278, 290, 507
BslFI GGGAC 1 cut(s) 640
BslI CCNNNNNNNGG 4 cut(s) 173, 191, 834, 927
BsmFI GGGAC 1 cut(s) 640
BsmI GAATGC 1 cut(s) 569
BsnI GGCC 4 cut(s) 153, 240, 821, 944
Bsp1286I GDGCHC 3 cut(s) 278, 290, 507
Bsp143I GATC 3 cut(s) 401, 513, 673
Bsp1720I GCTNAGC 1 cut(s) 455
BspACI CCGC 2 cut(s) 167, 768
BspANI GGCC 4 cut(s) 153, 240, 821, 944
BspCNI CTCAG 2 cut(s) 480, 836
BspHI TCATGA 3 cut(s) 31, 529, 901
BspLI GGNNCC 3 cut(s) 128, 265, 544
BspMAI CTGCAG 1 cut(s) 876
BspPI GGATC 1 cut(s) 409
BspT107I GGYRCC 1 cut(s) 263
BsrDI GCAATG 2 cut(s) 140, 390
BssMI GATC 3 cut(s) 401, 513, 673
BssSI CACGAG 1 cut(s) 156
Bst2BI CACGAG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 4 cut(s) 15, 280, 344, 580
BstC8I GCNNGC 3 cut(s) 717, 750, 819
BstDEI CTNAG 5 cut(s) 294, 455, 488, 785, 823
BstF5I GGATG 3 cut(s) 383, 813, 917
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 3 cut(s) 404, 516, 676
BstMBI GATC 3 cut(s) 401, 513, 673
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 2 cut(s) 646, 872
BstSLI GKGCMC 2 cut(s) 278, 507
BstV1I GCAGC 2 cut(s) 346, 414
BstV2I GAAGAC 1 cut(s) 648
BstX2I RGATCY 1 cut(s) 673
BstYI RGATCY 1 cut(s) 673
BsuRI GGCC 4 cut(s) 153, 240, 821, 944
BtsCI GGATG 3 cut(s) 383, 813, 917
BtsIMutI CAGTG 2 cut(s) 11, 276
Cac8I GCNNGC 3 cut(s) 717, 750, 819
CciI TCATGA 3 cut(s) 31, 529, 901
CfoI GCGC 1 cut(s) 432
Cfr13I GGNCC 2 cut(s) 152, 239
Csp6I GTAC 3 cut(s) 195, 264, 842
CviAII CATG 8 cut(s) 32, 76, 223, 323, 530, 854, 902, 952
CviQI GTAC 3 cut(s) 195, 264, 842
DdeI CTNAG 5 cut(s) 294, 455, 488, 785, 823
DpnI GATC 3 cut(s) 403, 515, 675
DpnII GATC 3 cut(s) 401, 513, 673
Ecl136II GAGCTC 1 cut(s) 288
Eco147I AGGCCT 1 cut(s) 944
Eco24I GRGCYC 1 cut(s) 290
Eco32I GATATC 1 cut(s) 179
Eco53kI GAGCTC 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 959
EcoICRI GAGCTC 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 148
EcoRV GATATC 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 290
FaeI CATG 8 cut(s) 35, 79, 226, 326, 533, 857, 905, 955
FaqI GGGAC 1 cut(s) 640
FatI CATG 8 cut(s) 31, 75, 222, 322, 529, 853, 901, 951
FauNDI CATATG 1 cut(s) 376
Fnu4HI GCNGC 3 cut(s) 167, 360, 428
FokI GGATG 3 cut(s) 370, 820, 904
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 3 cut(s) 167, 360, 428
FspBI CTAG 3 cut(s) 24, 209, 365
FspI TGCGCA 1 cut(s) 431
GlaI GCGC 1 cut(s) 431
GluI GCNGC 3 cut(s) 167, 360, 428
HaeIII GGCC 4 cut(s) 153, 240, 821, 944
HhaI GCGC 1 cut(s) 432
Hin1II CATG 8 cut(s) 35, 79, 226, 326, 533, 857, 905, 955
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 2 cut(s) 445, 781
HphI GGTGA 2 cut(s) 282, 295
Hpy166II GTNNAC 3 cut(s) 84, 276, 505
Hpy188I TCNGA 6 cut(s) 176, 388, 415, 450, 489, 700
Hpy188III TCNNGA 5 cut(s) 32, 317, 470, 530, 902
Hpy8I GTNNAC 3 cut(s) 84, 276, 505
HpyAV CCTTC 3 cut(s) 59, 856, 934
HpyCH4III ACNGT 4 cut(s) 15, 280, 344, 580
HpyCH4V TGCA 7 cut(s) 276, 395, 505, 569, 614, 719, 874
HpyF3I CTNAG 5 cut(s) 294, 455, 488, 785, 823
Hsp92II CATG 8 cut(s) 35, 79, 226, 326, 533, 857, 905, 955
HspAI GCGC 1 cut(s) 430
KpnI GGTACC 1 cut(s) 267
Kzo9I GATC 3 cut(s) 401, 513, 673
LmnI GCTCC 1 cut(s) 380
LpnPI CCDG 7 cut(s) 66, 79, 135, 162, 723, 803, 912
Lsp1109I GCAGC 2 cut(s) 346, 414
LweI GCATC 2 cut(s) 392, 441
MaeI CTAG 3 cut(s) 24, 209, 365
MaeIII GTNAC 3 cut(s) 19, 317, 344
MalI GATC 3 cut(s) 403, 515, 675
MboI GATC 3 cut(s) 401, 513, 673
MboII GAAGA 6 cut(s) 124, 173, 653, 812, 823, 917
MfeI CAATTG 2 cut(s) 354, 771
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 3 cut(s) 278, 290, 507
MluCI AATT 9 cut(s) 57, 212, 243, 354, 537, 653, 666, 738, 771
MlyI GAGTC 1 cut(s) 454
MmeI TCCRAC 3 cut(s) 280, 363, 411
MroXI GAANNNNTTC 1 cut(s) 48
MslI CAYNNNNRTG 5 cut(s) 13, 221, 281, 900, 906
MspR9I CCNGG 1 cut(s) 150
MunI CAATTG 2 cut(s) 354, 771
Mva1269I GAATGC 1 cut(s) 569
MvaI CCWGG 1 cut(s) 150
NdeI CATATG 1 cut(s) 376
NdeII GATC 3 cut(s) 401, 513, 673
NlaIII CATG 8 cut(s) 35, 79, 226, 326, 533, 857, 905, 955
NlaIV GGNNCC 3 cut(s) 128, 265, 544
NmuCI GTSAC 2 cut(s) 317, 344
NsbI TGCGCA 1 cut(s) 431
OliI CACNNNNGTG 1 cut(s) 281
PagI TCATGA 3 cut(s) 31, 529, 901
PceI AGGCCT 1 cut(s) 944
PctI GAATGC 1 cut(s) 569
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 1 cut(s) 781
PflMI CCANNNNNTGG 1 cut(s) 191
PkrI GCNGC 3 cut(s) 168, 361, 429
PleI GAGTC 1 cut(s) 453
PpsI GAGTC 1 cut(s) 453
Psp124BI GAGCTC 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 3 cut(s) 128, 265, 544
PspPI GGNCC 2 cut(s) 152, 239
PstI CTGCAG 1 cut(s) 876
PsuI RGATCY 1 cut(s) 673
RsaI GTAC 3 cut(s) 196, 265, 843
RsaNI GTAC 3 cut(s) 195, 264, 842
RseI CAYNNNNRTG 5 cut(s) 13, 221, 281, 900, 906
SacI GAGCTC 1 cut(s) 290
SatI GCNGC 3 cut(s) 167, 360, 428
Sau3AI GATC 3 cut(s) 401, 513, 673
Sau96I GGNCC 2 cut(s) 152, 239
SchI GAGTC 1 cut(s) 454
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 3 cut(s) 278, 290, 507
SfaNI GCATC 2 cut(s) 392, 441
SfcI CTRYAG 2 cut(s) 646, 872
SmiMI CAYNNNNRTG 5 cut(s) 13, 221, 281, 900, 906
Sse9I AATT 9 cut(s) 57, 212, 243, 354, 537, 653, 666, 738, 771
SseBI AGGCCT 1 cut(s) 944
SsiI CCGC 2 cut(s) 167, 768
SspMI CTAG 3 cut(s) 24, 209, 365
SstI GAGCTC 1 cut(s) 290
StuI AGGCCT 1 cut(s) 944
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 4 cut(s) 15, 280, 344, 580
TaqI TCGA 1 cut(s) 512
TasI AATT 9 cut(s) 57, 212, 243, 354, 537, 653, 666, 738, 771
TatI WGTACW 1 cut(s) 841
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 1 cut(s) 781
TscAI CASTG 2 cut(s) 18, 283
TseFI GTSAC 2 cut(s) 317, 344
TseI GCWGC 2 cut(s) 359, 427
Tsp45I GTSAC 2 cut(s) 317, 344
TspDTI ATGAA 3 cut(s) 64, 824, 918
TspGWI ACGGA 1 cut(s) 820
TspRI CASTG 2 cut(s) 18, 283
Van91I CCANNNNNTGG 1 cut(s) 191
VneI GTGCAC 2 cut(s) 274, 503
XapI RAATTY 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 48
XspI CTAG 3 cut(s) 24, 209, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.