Rh7CG204000

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000490
Physical Location & Seq
Reverse (-)
18129610 .. 18131933
2324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG204000.1

Sequence Viewer

Length: 876 bp
ATGGCAAGGGTTTATGGCCCAATTTACAAACTCCAACTTGGTACCAAGTTGTGGATTGTGGTCAGCTCACCTGAGCTTGTGAAACAAGTGGTTCGTGACCATGACACAACATTTTCAAACCGTGATCCTACAGTTGCTGCTCTAATTGCCTCATATGGAGCAACCGACATAGCGTTTGGATCCTATGGTTCAGATTGGAGGAAGCTGCGCAAGGTGTTTGTGGGTCTGGTGCTAAGCAAAACCAACCTTGATGATTGCTATGCTCTGAGAAAAGAGGAAATGCACAAGTCGATCAGTCAGATATATCATGACAAAATTGGAACCCCAACTGATTTGGGTGGGTTTGCATTTTCCACAGCAATCAACACAATTTTGCGTATGCTATGGGGTGCCACTCCACAAGGAGAGAAGGGGAGTGACTATGGGGAACAGTATAGAAAAGTGATGGCAGAAATGGTTTATCTACTTGGGAAACCAAACATTTCGGACTATTTTCCTGCGCTTGCAAGGTTTGACATACAAGGAATTGAGAGGCAAACAAAGAAGGTTCAATCCGAGATTGACAAGATTCTAACTTGTGCCATAGAAGAACGGATGAAGAAGCTGGCCTCGGGTGAAAATGGGGGAGTACAACAAAACCATGAAAGGAAGGACTTTCTGCAGTTGCTCTTGGAGAGCAATAATTCTCATGAAGACGGTTCAACATCCGTTAGGGTGCAACAATTGAAGGGCATGCTCGCGATGAAAATATTATGGCAACTCTCACGAAGACTGGAGAACCTTTTAGGGCTGCAAGAAGTGAAGGATGGGCTTGTCCGTGCAATAGTTATTGGGTCTTCTCTTAGGCCTGCACCTACAGTTGGGCTGGACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

291

Amino Acids

32.58

Weight (kDa)

9.02

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 234 2.8e-24 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 209
Acc65I GGTACC 1 cut(s) 41
AccB1I GGYRCC 2 cut(s) 41, 389
AccB7I CCANNNNNTGG 1 cut(s) 51
AccII CGCG 1 cut(s) 740
AclWI GGATC 3 cut(s) 119, 174, 187
AfaI GTAC 2 cut(s) 43, 630
AfiI CCNNNNNNNGG 2 cut(s) 51, 860
AgsI TTSAA 4 cut(s) 117, 551, 702, 727
AluBI AGCT 4 cut(s) 66, 76, 205, 604
AluI AGCT 4 cut(s) 66, 76, 205, 604
AlwI GGATC 3 cut(s) 119, 174, 187
AlwNI CAGNNNCTG 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 610
AoxI GGCC 3 cut(s) 16, 606, 845
ApeKI GCWGC 3 cut(s) 137, 205, 790
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
Asp718I GGTACC 1 cut(s) 41
AspLEI GCGC 2 cut(s) 210, 502
AspS9I GGNCC 2 cut(s) 17, 868
AsuHPI GGTGA 2 cut(s) 60, 626
AvaI CYCGRG 1 cut(s) 610
AvaII GGWCC 1 cut(s) 868
BamHI GGATCC 1 cut(s) 179
BanI GGYRCC 2 cut(s) 41, 389
BbsI GAAGAC 3 cut(s) 699, 775, 828
BbvI GCAGC 3 cut(s) 124, 192, 777
BccI CCATC 2 cut(s) 439, 800
BfmI CTRYAG 3 cut(s) 129, 659, 855
BisI GCNGC 3 cut(s) 138, 206, 791
BlpI GCTNAGC 1 cut(s) 233
BlsI GCNGC 3 cut(s) 139, 207, 792
Bme18I GGWCC 1 cut(s) 868
BmeT110I CYCGRG 1 cut(s) 610
BmgT120I GGNCC 2 cut(s) 17, 868
BmiI GGNNCC 4 cut(s) 43, 181, 322, 391
BpiI GAAGAC 3 cut(s) 699, 775, 828
BpmI CTGGAG 1 cut(s) 794
Bpu10I CCTNAGC 1 cut(s) 72
Bpu1102I GCTNAGC 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 609
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 860
Bse1I ACTGG 1 cut(s) 777
BseDI CCNNGG 1 cut(s) 609
BseGI GGATG 3 cut(s) 600, 704, 811
BseLI CCNNNNNNNGG 2 cut(s) 51, 860
BseMII CTCAG 2 cut(s) 63, 257
BseNI ACTGG 1 cut(s) 777
BseXI GCAGC 3 cut(s) 124, 192, 777
BsgI GTGCAG 1 cut(s) 834
Bsh1236I CGCG 1 cut(s) 740
BshFI GGCC 3 cut(s) 18, 608, 847
BshNI GGYRCC 2 cut(s) 41, 389
BsiHKCI CYCGRG 1 cut(s) 610
BslI CCNNNNNNNGG 2 cut(s) 51, 860
BsnI GGCC 3 cut(s) 18, 608, 847
BsoBI CYCGRG 1 cut(s) 610
Bsp143I GATC 3 cut(s) 124, 179, 291
Bsp1720I GCTNAGC 1 cut(s) 233
Bsp68I TCGCGA 1 cut(s) 740
BspANI GGCC 3 cut(s) 18, 608, 847
BspCNI CTCAG 2 cut(s) 64, 258
BspFNI CGCG 1 cut(s) 740
BspHI TCATGA 2 cut(s) 307, 688
BspLI GGNNCC 4 cut(s) 43, 181, 322, 391
BspMAI CTGCAG 1 cut(s) 663
BspPI GGATC 3 cut(s) 119, 174, 187
BspT107I GGYRCC 2 cut(s) 41, 389
BsrI ACTGG 1 cut(s) 777
BssECI CCNNGG 1 cut(s) 609
BssMI GATC 3 cut(s) 124, 179, 291
Bst4CI ACNGT 5 cut(s) 122, 133, 432, 698, 859
BstC8I GCNNGC 5 cut(s) 504, 606, 734, 738, 849
BstDEI CTNAG 4 cut(s) 72, 233, 266, 842
BstF5I GGATG 3 cut(s) 600, 704, 811
BstFNI CGCG 1 cut(s) 740
BstHHI GCGC 2 cut(s) 210, 502
BstKTI GATC 3 cut(s) 127, 182, 294
BstMBI GATC 3 cut(s) 124, 179, 291
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNSI RCATGY 1 cut(s) 736
BstSFI CTRYAG 3 cut(s) 129, 659, 855
BstUI CGCG 1 cut(s) 740
BstV1I GCAGC 3 cut(s) 124, 192, 777
BstV2I GAAGAC 3 cut(s) 699, 775, 828
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
BsuRI GGCC 3 cut(s) 18, 608, 847
BtgZI GCGATG 1 cut(s) 755
BtsCI GGATG 3 cut(s) 600, 704, 811
BtuMI TCGCGA 1 cut(s) 740
Cac8I GCNNGC 5 cut(s) 504, 606, 734, 738, 849
CaiI CAGNNNCTG 1 cut(s) 137
CciI TCATGA 2 cut(s) 307, 688
CfoI GCGC 2 cut(s) 210, 502
Cfr13I GGNCC 2 cut(s) 17, 868
Csp6I GTAC 2 cut(s) 42, 629
CviAII CATG 5 cut(s) 101, 308, 641, 689, 733
CviQI GTAC 2 cut(s) 42, 629
DdeI CTNAG 4 cut(s) 72, 233, 266, 842
DpnI GATC 3 cut(s) 126, 181, 293
DpnII GATC 3 cut(s) 124, 179, 291
Eco147I AGGCCT 1 cut(s) 847
Eco47I GGWCC 1 cut(s) 868
Eco88I CYCGRG 1 cut(s) 610
FaeI CATG 5 cut(s) 104, 311, 644, 692, 736
FatI CATG 5 cut(s) 100, 307, 640, 688, 732
FauNDI CATATG 1 cut(s) 154
Fnu4HI GCNGC 3 cut(s) 138, 206, 791
FokI GGATG 3 cut(s) 607, 691, 818
Fsp4HI GCNGC 3 cut(s) 138, 206, 791
FspI TGCGCA 1 cut(s) 209
GlaI GCGC 2 cut(s) 209, 501
GluI GCNGC 3 cut(s) 138, 206, 791
GsuI CTGGAG 1 cut(s) 794
HaeIII GGCC 3 cut(s) 18, 608, 847
HhaI GCGC 2 cut(s) 210, 502
Hin1II CATG 5 cut(s) 104, 311, 644, 692, 736
Hin6I GCGC 2 cut(s) 208, 500
HinP1I GCGC 2 cut(s) 208, 500
HinfI GANTC 1 cut(s) 568
HphI GGTGA 2 cut(s) 60, 626
Hpy188I TCNGA 5 cut(s) 193, 267, 300, 487, 556
Hpy188III TCNNGA 5 cut(s) 95, 308, 689, 739, 765
HpyAV CCTTC 5 cut(s) 403, 538, 643, 721, 796
HpyCH4III ACNGT 5 cut(s) 122, 133, 432, 698, 859
HpyCH4V TGCA 8 cut(s) 283, 347, 506, 661, 718, 793, 821, 851
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 4 cut(s) 72, 233, 266, 842
Hsp92II CATG 5 cut(s) 104, 311, 644, 692, 736
HspAI GCGC 2 cut(s) 208, 500
KpnI GGTACC 1 cut(s) 45
Kzo9I GATC 3 cut(s) 124, 179, 291
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 7 cut(s) 84, 212, 510, 590, 758, 851, 861
Lsp1109I GCAGC 3 cut(s) 124, 192, 777
MaeIII GTNAC 2 cut(s) 95, 416
MalI GATC 3 cut(s) 126, 181, 293
MboI GATC 3 cut(s) 124, 179, 291
MboII GAAGA 5 cut(s) 599, 610, 704, 780, 828
MfeI CAATTG 1 cut(s) 722
MflI RGATCY 1 cut(s) 179
MluCI AATT 7 cut(s) 21, 144, 315, 369, 525, 682, 722
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 5 cut(s) 160, 192, 268, 525, 619
MunI CAATTG 1 cut(s) 722
MvnI CGCG 1 cut(s) 740
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeI CATATG 1 cut(s) 154
NdeII GATC 3 cut(s) 124, 179, 291
NlaIII CATG 5 cut(s) 104, 311, 644, 692, 736
NlaIV GGNNCC 4 cut(s) 43, 181, 322, 391
NmuCI GTSAC 2 cut(s) 95, 416
NruI TCGCGA 1 cut(s) 740
NsbI TGCGCA 1 cut(s) 209
NspI RCATGY 1 cut(s) 736
PaeI GCATGC 1 cut(s) 736
PagI TCATGA 2 cut(s) 307, 688
PceI AGGCCT 1 cut(s) 847
PfeI GAWTC 1 cut(s) 568
PflMI CCANNNNNTGG 1 cut(s) 51
PkrI GCNGC 3 cut(s) 139, 207, 792
PspN4I GGNNCC 4 cut(s) 43, 181, 322, 391
PspPI GGNCC 2 cut(s) 17, 868
PstI CTGCAG 1 cut(s) 663
PstNI CAGNNNCTG 1 cut(s) 137
PsuI RGATCY 1 cut(s) 179
RruI TCGCGA 1 cut(s) 740
RsaI GTAC 2 cut(s) 43, 630
RsaNI GTAC 2 cut(s) 42, 629
SatI GCNGC 3 cut(s) 138, 206, 791
Sau3AI GATC 3 cut(s) 124, 179, 291
Sau96I GGNCC 2 cut(s) 17, 868
SfcI CTRYAG 3 cut(s) 129, 659, 855
SinI GGWCC 1 cut(s) 868
SphI GCATGC 1 cut(s) 736
Sse9I AATT 7 cut(s) 21, 144, 315, 369, 525, 682, 722
SseBI AGGCCT 1 cut(s) 847
SspI AATATT 1 cut(s) 750
StuI AGGCCT 1 cut(s) 847
TaaI ACNGT 5 cut(s) 122, 133, 432, 698, 859
TaqI TCGA 1 cut(s) 290
TasI AATT 7 cut(s) 21, 144, 315, 369, 525, 682, 722
TatI WGTACW 1 cut(s) 628
TfiI GAWTC 1 cut(s) 568
TseFI GTSAC 2 cut(s) 95, 416
TseI GCWGC 3 cut(s) 137, 205, 790
Tsp45I GTSAC 2 cut(s) 95, 416
TspDTI ATGAA 4 cut(s) 611, 657, 705, 758
TspGWI ACGGA 3 cut(s) 607, 697, 806
Van91I CCANNNNNTGG 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 868
XceI RCATGY 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.