RLG00000003649

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000490
Physical Location & Seq
Forward (+)
51260209 .. 51260975
767 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003649

Sequence Viewer

Length: 591 bp
ATGTGGTCATCATGGGGTACCGATGCTACCAATGATAAAGATGAAAATCTCAAAGCAATATTTCTTGCCCTTCTAGCTATGATATTGCTGTGCACTTGCACCCGCCGTGCACTGAAGAATTTTCGGAAAAAGTGCTCAAAGAACCCAATACCTCCATTGCCACCAGGACCTATAGGTTTGCCACTACTTGGATACCATCCCTTCTTAGGCACCAACCTTCACCGTGAATTCACCGAGTTGGCGAGGGTTTATGGCCCTATTTACAAACTCCGCCTCGGAAGCAAATTATGTGTTGTGATCAGTTCCCCAACACTTCTGAAAGAAATCGTTCGTGACCATGACACTGTGTTTGCTAACCATGTTCCTACCACAGCTGCACTAGTTGGCTCATATGGAGCAAGGGACATCGCATTCGGACCCTACGGTCCAGATTGGAGGCGGCTACGCAAGGTGTTTGTGAGTAAGATGCTAAGCAAAACCAACCTTGATGATAGCTTTGCTCTGACAAGGGAAGAGGTTAACAAGTCAATTGGGAGGCGGAACAATTTTCCCATTCCCATTCCCATTACCGTCGCGGAACAAGATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

197

Amino Acids

22.03

Weight (kDa)

9.66

Isoelectric Point (pI)

32.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 54 - 173 7.3e-17 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 423
Acc65I GGTACC 1 cut(s) 17
AccB1I GGYRCC 2 cut(s) 17, 209
AccB7I CCANNNNNTGG 1 cut(s) 188
AccII CGCG 1 cut(s) 575
AciI CCGC 5 cut(s) 103, 271, 439, 538, 575
AcsI RAATTY 2 cut(s) 118, 227
AcuI CTGAAG 1 cut(s) 134
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 2 cut(s) 188, 206
AhlI ACTAGT 1 cut(s) 379
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 3 cut(s) 77, 374, 495
AluI AGCT 3 cut(s) 77, 374, 495
Alw21I GWGCWC 3 cut(s) 95, 112, 137
Alw44I GTGCAC 2 cut(s) 91, 108
AoxI GGCC 1 cut(s) 253
ApaLI GTGCAC 2 cut(s) 91, 108
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 2 cut(s) 118, 227
ArsI GACNNNNNNTTYG 4 cut(s) 332, 364, 395, 427
Asp700I GAANNNNTTC 1 cut(s) 327
Asp718I GGTACC 1 cut(s) 17
AspS9I GGNCC 4 cut(s) 167, 254, 416, 425
AsuHPI GGTGA 2 cut(s) 212, 223
AvaII GGWCC 3 cut(s) 167, 416, 425
BaeGI GKGCMC 2 cut(s) 95, 112
BanI GGYRCC 2 cut(s) 17, 209
Bbv12I GWGCWC 3 cut(s) 95, 112, 137
BbvI GCAGC 1 cut(s) 361
BccI CCATC 1 cut(s) 204
BceAI ACGGC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 165
BciVI GTATCC 1 cut(s) 185
BclI TGATCA 1 cut(s) 297
BcuI ACTAGT 1 cut(s) 379
BfaI CTAG 2 cut(s) 74, 380
BfmI CTRYAG 1 cut(s) 171
BfuI GTATCC 1 cut(s) 185
BisI GCNGC 2 cut(s) 375, 440
BlpI GCTNAGC 1 cut(s) 470
BlsI GCNGC 2 cut(s) 376, 441
Bme1390I CCNGG 1 cut(s) 165
Bme18I GGWCC 3 cut(s) 167, 416, 425
BmgT120I GGNCC 4 cut(s) 167, 254, 416, 425
BmiI GGNNCC 3 cut(s) 19, 211, 418
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 2 cut(s) 13, 456
Bpu1102I GCTNAGC 1 cut(s) 470
BsaBI GATNNNNATC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 274
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 206
Bse3DI GCAATG 1 cut(s) 155
Bse8I GATNNNNATC 1 cut(s) 45
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 274
BseGI GGATG 1 cut(s) 196
BseJI GATNNNNATC 1 cut(s) 45
BseLI CCNNNNNNNGG 2 cut(s) 188, 206
BseMI GCAATG 1 cut(s) 155
BseSI GKGCMC 2 cut(s) 95, 112
BseXI GCAGC 1 cut(s) 361
BsgI GTGCAG 1 cut(s) 360
Bsh1236I CGCG 1 cut(s) 575
BshFI GGCC 1 cut(s) 255
BshNI GGYRCC 2 cut(s) 17, 209
BsiHKAI GWGCWC 3 cut(s) 95, 112, 137
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 2 cut(s) 188, 206
BsmFI GGGAC 1 cut(s) 416
BsmI GAATGC 1 cut(s) 410
BsnI GGCC 1 cut(s) 255
Bsp1286I GDGCHC 3 cut(s) 95, 112, 137
Bsp143I GATC 1 cut(s) 297
Bsp1720I GCTNAGC 1 cut(s) 470
BspACI CCGC 5 cut(s) 103, 271, 439, 538, 575
BspANI GGCC 1 cut(s) 255
BspFNI CGCG 1 cut(s) 575
BspLI GGNNCC 3 cut(s) 19, 211, 418
BspT107I GGYRCC 2 cut(s) 17, 209
BsrDI GCAATG 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 4 cut(s) 224, 346, 425, 571
Bst6I CTCTTC 1 cut(s) 507
BstDEI CTNAG 2 cut(s) 205, 470
BstF5I GGATG 1 cut(s) 196
BstFNI CGCG 1 cut(s) 575
BstKTI GATC 1 cut(s) 300
BstMBI GATC 1 cut(s) 297
BstMWI GCNNNNNNNGC 2 cut(s) 74, 279
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 1 cut(s) 171
BstSLI GKGCMC 2 cut(s) 95, 112
BstUI CGCG 1 cut(s) 575
BstV1I GCAGC 1 cut(s) 361
BsuI GTATCC 1 cut(s) 185
BsuRI GGCC 1 cut(s) 255
BtgZI GCGATG 1 cut(s) 391
BtsCI GGATG 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 110, 342
Cfr13I GGNCC 4 cut(s) 167, 254, 416, 425
Csp6I GTAC 1 cut(s) 18
CviAII CATG 3 cut(s) 12, 338, 359
CviJI RGCY 6 cut(s) 77, 255, 374, 387, 442, 495
CviKI_1 RGCY 6 cut(s) 77, 255, 374, 387, 442, 495
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 2 cut(s) 205, 470
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
DrdI GACNNNNNNGTC 1 cut(s) 423
DseDI GACNNNNNNGTC 1 cut(s) 423
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
EciI GGCGGA 2 cut(s) 260, 553
Eco47I GGWCC 3 cut(s) 167, 416, 425
Eco57I CTGAAG 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 163
FaeI CATG 3 cut(s) 15, 341, 362
FaiI YATR 9 cut(s) 13, 80, 173, 252, 289, 339, 360, 391, 393
FaqI GGGAC 1 cut(s) 416
FatI CATG 3 cut(s) 11, 337, 358
FauI CCCGC 1 cut(s) 110
FauNDI CATATG 1 cut(s) 391
FbaI TGATCA 1 cut(s) 297
Fnu4HI GCNGC 2 cut(s) 375, 440
FokI GGATG 1 cut(s) 183
Fsp4HI GCNGC 2 cut(s) 375, 440
FspBI CTAG 2 cut(s) 74, 380
GluI GCNGC 2 cut(s) 375, 440
HaeIII GGCC 1 cut(s) 255
Hin1II CATG 3 cut(s) 15, 341, 362
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HpaI GTTAAC 1 cut(s) 520
HphI GGTGA 2 cut(s) 212, 223
Hpy166II GTNNAC 3 cut(s) 93, 110, 520
Hpy188I TCNGA 5 cut(s) 126, 278, 318, 416, 504
Hpy188III TCNNGA 2 cut(s) 332, 428
Hpy8I GTNNAC 3 cut(s) 93, 110, 520
Hpy99I CGWCG 1 cut(s) 575
HpyAV CCTTC 3 cut(s) 80, 211, 227
HpyCH4III ACNGT 4 cut(s) 224, 346, 425, 571
HpyCH4V TGCA 4 cut(s) 93, 99, 110, 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 279
HpyF3I CTNAG 2 cut(s) 205, 470
Hsp92II CATG 3 cut(s) 15, 341, 362
KpnI GGTACC 1 cut(s) 21
Ksp22I TGATCA 1 cut(s) 297
KspAI GTTAAC 1 cut(s) 520
Kzo9I GATC 1 cut(s) 297
LmnI GCTCC 1 cut(s) 395
LpnPI CCDG 3 cut(s) 150, 177, 441
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 2 cut(s) 13, 456
MaeI CTAG 2 cut(s) 74, 380
MaeIII GTNAC 1 cut(s) 332
MalI GATC 1 cut(s) 299
MboI GATC 1 cut(s) 297
MboII GAAGA 2 cut(s) 127, 524
MfeI CAATTG 1 cut(s) 528
MhlI GDGCHC 3 cut(s) 95, 112, 137
MluCI AATT 5 cut(s) 118, 227, 284, 528, 544
MnlI CCTC 6 cut(s) 162, 237, 284, 429, 508, 528
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 1 cut(s) 519
MspA1I CMGCKG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 165
MunI CAATTG 1 cut(s) 528
Mva1269I GAATGC 1 cut(s) 410
MvaI CCWGG 1 cut(s) 165
MvnI CGCG 1 cut(s) 575
MwoI GCNNNNNNNGC 2 cut(s) 74, 279
NdeI CATATG 1 cut(s) 391
NdeII GATC 1 cut(s) 297
NlaIII CATG 3 cut(s) 15, 341, 362
NlaIV GGNNCC 3 cut(s) 19, 211, 418
NmuCI GTSAC 1 cut(s) 332
PctI GAATGC 1 cut(s) 410
PdmI GAANNNNTTC 1 cut(s) 327
PflMI CCANNNNNTGG 1 cut(s) 188
PkrI GCNGC 2 cut(s) 376, 441
PpuMI RGGWCCY 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 3 cut(s) 19, 211, 418
PspPI GGNCC 4 cut(s) 167, 254, 416, 425
PspPPI RGGWCCY 1 cut(s) 167
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 2 cut(s) 375, 440
Sau3AI GATC 1 cut(s) 297
Sau96I GGNCC 4 cut(s) 167, 254, 416, 425
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 3 cut(s) 95, 112, 137
SfaNI GCATC 2 cut(s) 13, 456
SfcI CTRYAG 1 cut(s) 171
SinI GGWCC 3 cut(s) 167, 416, 425
SpeI ACTAGT 1 cut(s) 379
Sse9I AATT 5 cut(s) 118, 227, 284, 528, 544
SsiI CCGC 5 cut(s) 103, 271, 439, 538, 575
SspI AATATT 1 cut(s) 60
SspMI CTAG 2 cut(s) 74, 380
StyD4I CCNGG 1 cut(s) 163
TaaI ACNGT 4 cut(s) 224, 346, 425, 571
TasI AATT 5 cut(s) 118, 227, 284, 528, 544
TauI GCSGC 1 cut(s) 442
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 2 cut(s) 117, 349
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 1 cut(s) 57
TspRI CASTG 2 cut(s) 117, 349
Van91I CCANNNNNTGG 1 cut(s) 188
VneI GTGCAC 2 cut(s) 91, 108
VpaK11BI GGWCC 3 cut(s) 167, 416, 425
XapI RAATTY 2 cut(s) 118, 227
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 2 cut(s) 74, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.